Array 1 1994-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEYH010000040.1 Streptomyces verrucosisporus strain CPB1-1 40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1993 29 100.0 32 ............................. GACACGGTGAGCATGTCCGCCTTGTCGTGGTC 1932 29 96.6 32 ............................T CGTGCTCGCTGGTCATGCGAAGGAGTCTCGTG 1871 29 100.0 32 ............................. GCGGTGCTCAAGGAAGACAAGAACGGTGCACG 1810 29 100.0 32 ............................. TAAGCCAACGAGCGTGACGGGGTTCATTGACG 1749 29 100.0 32 ............................. TAGAGCGCAACGGATGCCGGGGCCGCAGGCGG 1688 29 100.0 32 ............................. GAGTATGGTACGCAGTTCCGCAAGATGGGGCT 1627 29 100.0 32 ............................. AAGGCGCAAGACCTTTCGGACACCTTCAACGA 1566 29 100.0 35 ............................. CAGGCTCCGGCTCGCTGTCGCGCTCCGCGAAGTCG 1502 29 100.0 32 ............................. CACAAGACCACCGCCGCGGCCCTCAAGCAGAC 1441 29 100.0 32 ............................. GGCCGTGCCGCGCGCGCGCGGAACCCGTACAC 1380 29 100.0 32 ............................. GGCCTGAATCTGCTGCACACCTTGGTAATAGG 1319 29 100.0 32 ............................. GCCCGATGGGGCACCACGGAGGGCCGGGCCGT 1258 29 100.0 32 ............................. GACCGTGACCAGGGCGGCCGGGTCGGCGAAGT 1197 29 100.0 32 ............................. CCCACATTGCCGCCCGAGTACGTCGAGCAGAT 1136 29 100.0 32 ............................. GCGCCGAACCCCTTGGACTCGGCCAGGGCGCG 1075 29 100.0 32 ............................. TCTCCGCCGGTACCGACAGTACCGACGATCAA 1014 29 100.0 32 ............................. TGCTGTGCTACCCACGTCTGTTCGATACAGCG 953 29 96.6 32 ............................T ATCAGGAGGCATGAATGCCGTTCGAGGACAAC 892 29 100.0 32 ............................. CATCGACGTGCTCGGCGAGGAAGTACAGTTCG 831 29 100.0 32 ............................. GAGCGCCGCTCCTACTGACCACGACACGCCGA 770 29 100.0 32 ............................. GGGCCTGGGCAGGGCGCATCGTTCGATCCGGA 709 29 100.0 32 ............................. GGCAGCCACGGCAGGGCCCGCGCGCAGGACCG 648 29 100.0 32 ............................. CGTTGCCGCGTTGGAGATGAGAGGAGCTGCCA 587 29 100.0 32 ............................. GGCCGCAGGGTCGCCCAGCTCAACGCCACGTG 526 29 100.0 32 ............................. TCGCCCGCCACCGGCACATAGGTGGTGTCCGG 465 29 100.0 32 ............................. ATCACGTCACACAGAAGGGCGTCGGCCCGCTC 404 29 93.1 33 .........................GT.. CGCCCTGACGGTCGGGGACATCCTGGCGCTCCC 342 29 96.6 32 ............................A CCGTGCTGGTCAGGTTGATCGGGGCGAGCGTG 281 29 100.0 32 ............................. ACGGCCCGCTCGATCGCGCACGCGGCGTCGAG 220 29 100.0 32 ............................. AGGGTCAGCGCGGCCTCCACCGTGCGCGGGGC 159 29 96.6 32 .............T............... CGCACCGGCAAGGCCGCCCGCGTGCTCGCCGC 98 29 100.0 32 ............................. TACACCTCCTCCAACGATGAGGGCTCGGCGGT 37 29 96.6 0 ................T............ | ========== ====== ====== ====== ============================= =================================== ================== 33 29 99.3 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGATCAGCTCCGGTGTACCGCCGGCGGTGGTCTCCAAGACGCTGCGGCACTCGACGCTGTCCACCACGGTCAACCTCTACGGCCACCTGCTGCCCCACGCCGCCCGGGACGCGGTGCGGGCCCTGGGCCGCGCACTGGAGCGCGCCGACCGCGACCACGGGCCGACCGGAACGGCTCAGGCCGCATGAGCTGAGGCGCCGGACGATGAGCAGAGGCCTGGTTGCCCTGGATGGTTGCATCACCTTTGCGGCGCGGTGGACAAGAACCCCTCGTGATGAAGGATGGTGCTGTGGTCTCCGCGCTCGACAGAGTTGCGTAACCGGCCTTCTTCATCTCTTCCAGGGAGGGAAACCTGATGCGATGTCAGCCCATAGGATGCTTCCTGGCGTACCTGCGAGACGATAGTCAAGGATAGTATGCGCCATATGGCAGAGATGTCGGTTTCTTTGAAACTGTTCAGAAAACGAGCTTCCGGCGGATAAACCTGCAGGTCATTCAGT # Right flank : CTGCCACGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21393-19348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEYH010000042.1 Streptomyces verrucosisporus strain CPB1-1 42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21392 29 100.0 32 ............................. GGCAACCGAGTCAAGACATTCCGGGTCGGACA 21331 29 100.0 32 ............................. AACGCCGCAAACGCACCCGCGAAGGCCACGAA 21270 29 100.0 32 ............................. TGCTCCGGGCGGGGTTTCGTGCTGCGCTAGAA 21209 29 100.0 32 ............................. GATCTCGCTGCGCTGCGCGGCGCTCGTCTCGT 21148 29 100.0 32 ............................. GCGGACGGTGACTACCTGTGGGCGTCCGGTCT 21087 29 100.0 32 ............................. GGAAGGGGCAGCGAGTGAGTACACCTACGGAG 21026 29 100.0 32 ............................. GTGAAGCTAGAGCCCCGAAGGTCACCGCGACT 20965 29 100.0 32 ............................. GCCTTCATCCGCATCGGCAGCCGGGCCAGGGC 20904 29 100.0 32 ............................. CCTCCGGCCAGCCGCTCAACGACCGTGACCAG 20843 29 100.0 32 ............................. AGGCGAGATCATCTCTCATTCGTAGGGATGAT 20782 29 100.0 32 ............................. GGTCCGGCCGTACCGGGGAAGATCCAGTTGCG 20721 29 100.0 33 ............................. TGGAGGGGACAGAGCCTCGGCCCGCCGTACAGC 20659 29 100.0 32 ............................. CCGCGGCGGTCAGCCGCCCCGAGGTCCCAGCG 20598 29 100.0 32 ............................. CCGCACACGCCGCACCGGTGGGTGTACCAGAA 20537 29 100.0 32 ............................. GGTACGGGGACCTGGCCGGGGACCTGTACGCG 20476 29 100.0 32 ............................. TCCAAGAGGCGATCGCCGCCGGCCTCGCCCTG 20415 29 100.0 32 ............................. CGCGTCCTGACCGAGCTGCTGGACGATGCCCG 20354 29 100.0 32 ............................. GGCACCCGCGAGCTGCCCTCACGGCGGAACAC 20293 29 100.0 32 ............................. GACACGCCCTGCACCGGGAGCGCGTCCAAGAG 20232 29 100.0 32 ............................. GCGGCACCCAGCGCGGCGGCCTTGAATACCTG 20171 29 100.0 32 ............................. AACCAGGGCGGGCGCAGCAGTTCGGACCTCTA 20110 29 100.0 32 ............................. GGGTTCGTCGGCACCGAAGCCGAGTGGCTGGC 20049 29 100.0 32 ............................. ACCGCCCGGCCGGTCGTCCGCAACGTCCGCCA 19988 29 100.0 32 ............................. GATCACGGTCTCCGTGCCACCCGCCACCTTCT 19927 29 96.6 32 ............................G GACATGATCCGCGCGTTGAAGCAGCGCCGCGA 19866 29 96.6 32 ............................G GACATGATCCGCGCGTTGAAGCAGCGCCGCGA 19805 29 100.0 32 ............................. ACGGCCCGCTCGATCGCGCACGTGGCGTCGAG 19744 29 100.0 32 ............................. GGCATCACCCACATGGTCGAGATCGAACCGCC 19683 29 96.6 32 ...............A............. TGTGCCGCCACGTGGTCCCACGACCAACCCGG 19622 29 100.0 32 ............................. TCCGTACGGAACGGCGCCCGGTCCCGGGCCTC 19561 29 100.0 32 ............................. GCGCCGCTCATCTTCACCAGGCCGCCGGAGAC 19500 29 100.0 33 ............................. CACGCTGTCTACCTGGGCGGTTCCGCGGGGGGT 19438 29 100.0 32 ............................. GCGGCGGAGCTCGCCGGGGTGTCCGGTGACGG 19377 29 100.0 0 ............................. | T [19350] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGTGACCCTGCAGTCCGACCACGGGCAGGACGTGGCCGCCGGCCGCAACTATGCGGACGAGGTCATCTGGTGACCGTCATCGTCCTCACCCACTGCCCGGTCGGACTGCGTGGCTTCCTCACCCGATGGCTGCTGGAGATCTCCCCGGGCGTCTTCATCGGCGGTCCCTCCGCACGGATCCGCCAGGCGCTGTGGGAAGAGGTGAAGCAGTACGCGGGCAACGGCCGCGCGCTACTGGCCTACAGCACCAACAACGAGCAGGGCTTCGCCTTCGAGACCCACGACCACAAATGGCACCCCGTGGACCACGAGGGCCTCACCCTGATCCGCCGCCCGAACGACCAAGCCACCACCTCCCCGCCCCCGCCGCGCGGCTGGAGCAAGGCGTCCAAGCGCCGACGCTTCGGAAACCGATGAAGGAAGCCGAGTCCGTTATGTCCGAGTCGGTGAAACTGCTCGAATTCTCTTCCCCGCTCGTGTAAAGCAGCAGGCCACCGAGT # Right flank : CTTTATCGGTGAATGGTGGGTGGCGAATTGATCAGCGACGCGGGATCGGCTGCGTTCTCGGGAAGGCCGGAGTGAATGAGGGCCGTGTAGTGGTGAACTGAGCACGCAGCCGCTGTGCGCCGGGCGAGGGCTGGCGGGTGCCGGTGCCGTGGGCGAGGTCCTCGGTGAGGTGGGCGAGCAGGGAGGCCGGGGTGCAGGGGGAGGCGTGGATGGCCCAGGTGGGGCGGTCGATGCCGGGACCGGCCCACAGGGTCCAGGTGGCGAGGGTCGTATTGGGATTCTGGGCGGCGAAGGCGTCGAACTGGACGCCGGCATCACCTTGGTGGTTCTCCCAGCGGACCCACCGTCCGTCGACGGTGTGCATCCACCCGGCGTCGGTGAGGGGGCGGGTGGCTGCGGTAACACTCTTCTCGGTGATGGGGCCGCCGATGGCGGTCTCCCAGGCGTCTTCCTCGGTGAGCCGGTCCAACAGGGTATTGAGGACGGGGGCGGGGGTGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32464-31032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEYH010000042.1 Streptomyces verrucosisporus strain CPB1-1 42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32463 29 100.0 32 ............................. AGGGTGCGGTCAAGCATGTTCGGGCTGGACGG 32402 29 100.0 32 ............................. GGCTGTATGTGGTCAAGGTGCTCCGCCGGATC 32341 29 100.0 32 ............................. GAGTCGGCGCACGTAGCCCACGAGATCCGGGT 32280 29 100.0 32 ............................. CCGACGCCGGAAACGATCTCGTGGTGCGTGCG 32219 29 100.0 32 ............................. GGCATCAACTTCAAGTCGCACCCGCTGAACGA 32158 29 100.0 32 ............................. GCGCACACCTACGGCATTGAAGTTGAGAACCT 32097 29 100.0 32 ............................. TTTGCCGAAGCCCGCGCCCTTGAACACTTTTC 32036 29 100.0 32 ............................. ATGCACGGCTTCTACGAGGCGCCCGGAGTGCT 31975 29 100.0 32 ............................. TACCGGAGCGCGCGCCTCACTTGAGCAGCGAT 31914 29 100.0 32 ............................. GAATCCCACCACTCCGGCAGCTTCTCGACCAG 31853 29 100.0 32 ............................. GCTCCGTTCGTAGTCTCCGCTGTGTCAACCGT 31792 29 100.0 32 ............................. GCCCGGTGGGATGACCGCGTACTCGGCCGCAG 31731 29 100.0 32 ............................. TCAGGCGAGACCAGCTGGACACTCTGATCCAG 31670 29 100.0 32 ............................. TCCAGCGTGGACATCTCGCCGCTGGTGGCGGT 31609 29 100.0 32 ............................. ACGTCCACGGCGACGGGGTGCTGGTGGTAGGC 31548 29 100.0 32 ............................. TACTCCGGCAACAGTAAGAGCAAGTCGAAGCC 31487 29 100.0 32 ............................. CATGGAGGGTCCGGCGGGTACGCGCATGCTCC 31426 29 100.0 32 ............................. GCGGCGATCAGCCCCGCGCTGTAGTCCAGCGT 31365 29 100.0 32 ............................. TCGGTGCCGTAGCCGTCTCGGGTGATGAGCTT 31304 29 100.0 32 ............................. AGGCCGGTGCATCCCACCGTCAGGAACGGCAG 31243 29 100.0 32 ............................. ACCCGCACCCGTACCGACCGGTACGACGAGAT 31182 29 100.0 32 ............................. TCGCCGTCCCCCAGGAGATCGAGCGACTCCGC 31121 29 89.7 32 ................T.......AC... AACAACAAGATCACCCGGTGGTACGGCATCGG 31060 29 72.4 0 ............TG........GCAG.TG | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAGACATCAACTCGTAGGATGTCTCGCGGGTGCTCGCACGGTGGACTCAAGAGAAGGTATGCGTGATATGGCGGATATGCCGGAGCCTTCAAAGCTGGTCGGAACTCGCGGTTCCGGCGGGTAAACCCGCAGGTCACGGAG # Right flank : CTAGGGCGATCCTGTGTTGTGACCCGGGGGTCCCTGCCATCGCACCAGTCCGTATGGGCTGCTAGGGACTCCCGGGCCTGACTGGTTGTGCCGAGGCTGGACGCGGTCCAGTCTCCAGGATCTTGATGGTGGTGCGGACAGCAGCGATCAGAAGGTGATCGCTTGCGTTCTGTTTCGTGCAGTTTTCGGCATCCGTTTCGTGAGGGGTATGGCGCATGTTCAATAGCGCCATGGCTGGTGTGGGGGATGAGGAGCCGGGCCTGGGGGCGCGCTTGACCGGGGCGGTGCGGACCGTGTGGGCCAAGCATGACCGGGCGACGGACGGATGGCTGCCGCTGTGGCGGCACATGGCCGACAGCGGTGCCGTGGCCGGGCTGCTGTGGGACCGCTGGCTTCCGTCGAACGTGAAGGCGCTGGTGGCCGAGCCGCTTCCTGGCGGCATGGACGACGCGCGTCGGCTCGCGGTGTGGCTCGCGGCCACTCATGACATCGGCAAGGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //