Array 1 487832-483432 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPIN01000007.1 Cystobacter ferrugineus strain Cbfe23 Contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 487831 37 100.0 34 ..................................... GCGGTGGCAGCGTGGCCATGACCACAGTGTACCA 487760 37 100.0 34 ..................................... GCGGGCACGCTGGTTGGTCACACCTCGGCGGGCA 487689 37 100.0 35 ..................................... GCGATCAAGCTCCATACCGACAACACCGACGTGTG 487617 37 100.0 36 ..................................... GCGGGCCAAGCCGAGGGCCGCCAAGAAGCCGAAGAA 487544 37 100.0 33 ..................................... GCGGCAATGCTGACGTCGAAGATCTCGCCCCGG 487474 37 100.0 34 ..................................... GTCCTTGACGCGCAGCTCTCGCCGAGGAAGCGCA 487403 37 100.0 35 ..................................... CCGATGATGAGCACCCACCCCCGGGAGTGGCGCAA 487331 37 100.0 32 ..................................... TTCTCTACGCAGTACCCAGAAGGGCCTGTCCG 487262 37 100.0 34 ..................................... GTCTTGCAGACCTGGAACGCCTGCTCCAGATTCG 487191 37 100.0 34 ..................................... CAACCGACGACGCCCTGAACGCCGCGCTCGAGGG 487120 37 100.0 35 ..................................... CTGGTCAGGACGGCCTGCTACGTGGTAGGCCCGCA 487048 37 100.0 33 ..................................... CTTCCAGGGCAAGCCGCCTGTCCACGTCGTCGA 486978 37 100.0 36 ..................................... GGCGTCTCCTACGAGACGGAGAAGGAATACTGGCTG 486905 37 100.0 33 ..................................... CGTGCTGCGCCTTGCCAAGGCTGCGGGTGTGAA 486835 37 100.0 35 ..................................... GGGTTCGCCTGCTCCGTGTCTTTCGGCCGTCTCGT 486763 37 100.0 35 ..................................... AAGCGGTGCTTCACCCAATCGCCGGTGTCCTCCAG 486691 37 100.0 34 ..................................... TCGGCCCTGGTCAGCTTCGCGTTCAACGTGGGCA 486620 37 100.0 35 ..................................... CGACGCCATCCGCCGTCTTCACCAGGCGCGTGTCG 486548 37 100.0 34 ..................................... CGTAGTCGCCGGGAGCGGTGGCCATCGCGCTCTG 486477 37 100.0 35 ..................................... GCCAGGGTTGTTGCCGACTATCCCATCTGGGAGAA 486405 37 100.0 36 ..................................... AGCAAGCCCCTGGTGCCCGCCGCCCTGGTGCCGCTG 486332 37 100.0 35 ..................................... GGGACTGAAGGGCAGTTGGACCCACGAGGTGGGCA 486260 37 100.0 34 ..................................... GTCGTCTCGTCAGTCGCCTTGGCGGGTGGCACGG 486189 37 100.0 35 ..................................... TCGCGGCCGTACCGCTCGAACACCTGGGCGAGCAG 486117 37 100.0 35 ..................................... CGGTGTGCTCGCGCCAACACGGCGCGGGCGAGCGA 486045 37 100.0 35 ..................................... GTCTCGGTGGCGAAGATGCGCGCGCGGCTCGGTGA 485973 37 100.0 35 ..................................... CTCCAATCGGGGTTGCCTGGTTGCCCGGGTGCGGG 485901 37 100.0 34 ..................................... CCCGCCAGGGCCGCGAGAAGGGCCGCGCCAAGCA 485830 37 100.0 33 ..................................... ACCGTACCGGCGCCCTCCGCGCGCGGGTACACC 485760 37 100.0 34 ..................................... GCCTGACATGGCCGTGTCGACACTGTTGCACGAC 485689 37 100.0 35 ..................................... GTTCTCCACGCCGCTGCGCTTCGCGGCGAACTCGA 485617 37 100.0 34 ..................................... ACGAAGACGCGCAGCGTTTCCGGGTTGCCCTTGG 485546 37 100.0 34 ..................................... CGCTCGCGCCGCTCCTTGAGCTGCCGCCCTGCTT 485475 37 100.0 35 ..................................... TCCATGAACTCAGCGAAGACTCAGTCCGTAGTCAC 485403 37 100.0 33 ..................................... GCTTGGGGGGAGTCCCGCTCCAAGCTCTCCCAG 485333 37 100.0 35 ..................................... GACACGTACACGTCGTGGGACTTCGGCTTCGTCCG 485261 37 100.0 33 ..................................... CAGGTGTTGGTGTTGGTGCCGCCCTGCTTGAAG 485191 37 100.0 34 ..................................... TCTTCTTCCGTCAACTCCACCTTCCGCCATGCCA 485120 37 100.0 35 ..................................... GGCACCGAAGGGCAATTGGACCCGAGAGGTGGCCA 485048 37 100.0 37 ..................................... GCCACCTGCAACTCGGTGGGCTTCCACGGGCCGCGCA 484974 37 100.0 35 ..................................... AGGGAGTCCTCGTCCGCGAGGTGCGGCGCGTCGCC 484902 37 100.0 36 ..................................... TGGTACTTCACCATCAGTACGGTGCCGCCCGAGAGG 484829 37 100.0 34 ..................................... AATCTTCTCGACGGCGCCCTTGCCAAGACTTCCA 484758 37 100.0 35 ..................................... GCCATGACGGGCGAGAGAGAGGGAGAGGCGTGCGG 484686 37 100.0 35 ..................................... ACATCGACTCCCGCCCGTGCTCGCCGCCTCGGTGA 484614 37 100.0 34 ..................................... TGGCACTGCCCGGTGCGCTCGGCCAGCAGCTCAT 484543 37 100.0 35 ..................................... CGATGTAGCGGGCCGTCATCCAGGGCCGCTCCGCA 484471 37 100.0 35 ..................................... CGCCAGGTAGCGCCGTGGCATCCACCCGCCCTCGT 484399 37 100.0 35 ..................................... GCGCTCTGGCGCTACACGTACAGGCGTCGGCACCC 484327 37 100.0 34 ..................................... CCGGTAGATCTCCGGCAGCCTGCCCACCGCCTGG 484256 37 100.0 33 ..................................... ATCGAGAAACAGCGCCAGCGGCGCGAGGAGAGT 484186 37 100.0 36 ..................................... TCCATGGTAGTGGGTACTGCGTGGTTGCGTCCGGGG 484113 37 100.0 34 ..................................... GCCGTCTGGAGGAAGCGCATGCGCCGCCCCGCCG 484042 37 100.0 35 ..................................... TGGAGACGCTCGCCAACTTCAACGTCGCCCTTCGG 483970 37 100.0 35 ..................................... AACGTCATCGAGAACGACTTGAGCGAGGGGCGTTA 483898 37 100.0 34 ..................................... GAGCCCCCATAGGAGTCCGCCAGGCACCCGTGGA 483827 37 100.0 34 ..................................... CTCACGGACGTGGACTCCATCACCTGCAAGGTGA 483756 37 100.0 33 ..................................... GCGCGTGGGAGCGGGCGGTCATGACCGAGCACT 483686 37 100.0 36 ..................................... TGGGATACGCGCTCGTGGGCCCAGCCGTGCGCCACC 483613 37 100.0 33 ..................................... ACCGGGTTGGCGTCGGCGGGCTCCTGGTACGCG 483543 35 89.2 40 ......................T.T.--......... TGAGGGCCCGGCTCAGATGCGCAGGCCGAGCTGGGTCGCC 483468 37 75.7 0 C..TT.T...GA...C............A.G...... | ========== ====== ====== ====== ===================================== ======================================== ================== 62 37 99.4 35 GTCGCCCTCCTCTTCGGAGGGGGGCGCGGATTGAAAC # Left flank : TCTCCATGAGGTAGCAGCCAGTGTTCGTCATCATCTGCTACGACGTGTCCAATCAGGACTCGGCTGGAGCACGCCGCCTTCGACGGATCGCGGAGGCATGTAAAGACCACGGGGTGCGTGTCCAGTACTCCGTCTTCGAGTGTCGCCTGGAAGCCAAGGATTGGGTCGTGCTCAAGGACAAGTTGCTGTCCGAGTATGACGCCCGGCGCGACAGCCTGCGCTTCTACTACGTGTCGGCCGACGATGCTCAGCGGATAGAGCACTACGGAGTACGTCGCCCCCTGGACCCCACTGGTCCCTTGATCGTGTAGAATGGTCAGGAGCGCGAACCCCGGCCGGTGCGCTGCACACTGTAGGTTCGCGCGGCGTGTAACCCCCTGAAATTGCACACTTGTACCAGGCTTCATGGCACCACCCCCGGCCAGCGACTGTCACCTTGAACCATGTTCGCGAAAACCGGCTTTTTTCTTTTGTGATTTCCGTATGTTACAGTCTCTGCG # Right flank : GCAGCAACGGTGCGGCGAGGAGCGCGTATAGCGACGCCTACACTATACGGAGAGAAGTGCCAGCGGCCCACCGGACGGTGCTATTTCCGGGGCCGCATGCACCGCCCCCTGTCCGCCCGCCCACTCGTGATGACACGCGTGGGCCTGGCGCTCCTGCTCACCGCGGGACTCCTGCTCCTGGCCGGGTGTGCCACCAGCGCTCCGCTCGCCCGGGGGTGCACGCACGCGTGTGGTGGACCCGCCCTGTCCTCCGTCGAAGCAGAGCAAGGGCTCGCCCCCTTCTTCTCCTGCACCTCGCCCGCCGAGTTCGTCGCCCTGCAGCAGCGGGTGGACATGCCCCGGCTGCTGGAGTCCCTGGATGACTGGAGCGCCGTGCGCCTGGGCGCCCTGGGCCCCGTGCGCGAGGACGCCGCCGCCCTCCTCCAGCGCAAGCGCGCCTCCTTCCTCCGCTCCGTCACCGAGCGCTATGGCCTCGCCTATGCCGAGGTGTTCGCCCTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCTTCGGAGGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 46328-51337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPIN01000025.1 Cystobacter ferrugineus strain Cbfe23 Contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 46328 36 100.0 33 .................................... ATTGGCGCTTCATCGTGTCCAGCTGGAGGCGGA 46397 36 100.0 34 .................................... CGCTGGTACCACACCACGTCCGTCGTGGTGTTCC 46467 36 100.0 33 .................................... CGATGAAGCGCGGCCTCATTGTCTACGCCAAGG 46536 36 100.0 38 .................................... TAGCGCCAGACGTGGCCCTCGGGAAGCACGCCGTCGTA 46610 36 100.0 34 .................................... GTGGCCTCCGCCCGTCAGGGCTGGTGTCCGTACT 46680 36 100.0 33 .................................... ACGCAGCCGCGAGCACGAGAGAGGCGCCGCCCA 46749 36 100.0 34 .................................... TGTCCGAGCGGGAGATCGATGAGGTCCCCGCGCA 46819 36 100.0 34 .................................... TCCGGGAGCATGGTGGTAGCCCTCGGCCGGTAGC 46889 36 100.0 36 .................................... GTTAGGCTGAGTTACCTAGCCGAGCGCGGGCACCTT 46961 36 100.0 36 .................................... GTGGAAGCGATCTCCCGGTAGTACCGCGAGCGCTTG 47033 36 100.0 34 .................................... TAGCAGCCGCGACCGGGCCACGTCGCCGGGTCGG 47103 36 100.0 33 .................................... AAGAACTTGTCCTGGCTCTTCTCGGTGAGCATG 47172 36 100.0 35 .................................... ATGGTCTGGAAGTAGCGCCAGAAAATCGCCTTCTG 47243 36 100.0 32 .................................... TCGAGCGAGTCGCGTAGGGCAGCCACCTTCTT 47311 36 100.0 35 .................................... TCGAGCCCGCGCAGCACCCACTCGTTGGCGTCCGG 47382 36 100.0 33 .................................... GGCGTAACAATGTTATGAGCGGATGGATCCGCG 47451 36 100.0 34 .................................... GTGCGGACTGCGAGACGCGAGAGGATGACTTCGA 47521 36 100.0 35 .................................... CCGCTGGCTGGGAACGCTCCGGCAGTGGGGGTAAA 47592 36 100.0 38 .................................... ACTCGGCGGTCTACGCTGGACGCCCCGGGAGTGCCGGT 47666 36 100.0 38 .................................... GTGTGGGTGACGTAGAGCCAATGGACGCGCGGCCCGGC 47740 36 100.0 35 .................................... CCCTCGGGGCGCTCTTCCTCCACTTCCTGTTCGCG 47811 36 100.0 33 .................................... ATCCGTAGGTGGCGCGGGTTTGCGTGTGCGCTT 47880 36 100.0 36 .................................... CCGGAGCGCTTGGCCCGGTACGCGAAGGAGCAGGCG 47952 36 100.0 32 .................................... GAGAACAAGAGGCTGAAGATTCGCACGTGGAT 48020 36 100.0 34 .................................... GCGCCCCGCACCCCGTGGAGCACTTCTCGTTTTG 48090 36 100.0 35 .................................... GAGTCGTAGGGATTATCTCACGGTGAGAGGCGTGA 48161 36 100.0 35 .................................... ACATGGCTCCGGAGCGAGACGAACCCGCGCACCAC 48232 36 100.0 36 .................................... TTCCCTGGGGCTGGAGCGAAATGGAGGGAACACATC 48304 36 100.0 35 .................................... GAGTCGTAGGGATTATCTCACGGTGAGAGGCGTGA 48375 36 100.0 35 .................................... ACATGGCTCCGGAGCGAGACGAACCCGCGCACCAC 48446 36 100.0 36 .................................... TTCCCTGGGGCTGGAGCGAAATGGAGGGAACACATC 48518 36 100.0 37 .................................... GGCGGCCTGTGCGGCGGCAATGAAGGCGGGCTCCTGG 48591 36 100.0 37 .................................... GCCCAGGGCTTCGCGCCCGCCTGCCAGCGGTCGGACA 48664 36 100.0 34 .................................... AGGTAGACGACCTGCTCCCACAGAGGACCGAAAA 48734 36 100.0 34 .................................... CGGCCGCCCTTCTCCGCTACCTCACGGACGGCAC 48804 36 100.0 36 .................................... CGCCGTTGAGCGAGCGCCGCACTGAGCACCGCGTGC 48876 36 100.0 36 .................................... TTCACCGTCTCGTCCTCAGCACCGCCTCGAGTTGGG 48948 36 100.0 38 .................................... CTCGTTACCGCCCCCGATCGCCCTTCCGCGCAGGAGGA 49022 36 100.0 39 .................................... AAGGAGGAGGCGGCCTGAAGTGCGTCAAGGGTGGCGCGG 49097 36 100.0 34 .................................... CGCTTGAGGCTCTCCAGCATGGCGACACGGGGAA 49167 36 100.0 36 .................................... TCCCCGGAATATACGACTGGGTCGCCAAGGCGGCCG 49239 36 100.0 33 .................................... CCGAGGTGACCCTTTGCGATCGCGTCGAGCGTT 49308 36 100.0 38 .................................... TGGATGCTCCGAGTCCCGGGACAGACGGGCTCCACGGG 49382 36 100.0 35 .................................... AGGCCCCCTTCATGGACATGGAAGAGGGCTTCAAG 49453 36 100.0 33 .................................... GGACTGTGCCCGGCGGATGTACTCGCGCCGGTG 49522 36 100.0 38 .................................... CGATGCGCCCTGACCCATGGACAGCGCTTTCCGAGCGC 49596 36 100.0 37 .................................... AACGCTGCCGTCACGGCGCGCTGAATCCGCTTGTCCG 49669 36 100.0 36 .................................... CCCACAACCATCGGCTCGGGGTCGAACGCGGCCGGG 49741 36 100.0 35 .................................... CTCTGGGCCGGTTTGCTCGTGGCCGAGGGCGATGC 49812 36 100.0 37 .................................... GGCTGGCCATCGCACCGGGCCACCAGGAAGAGCCGCC 49885 36 100.0 36 .................................... GGCACGAGGGCGGACGCCTGAGCCTGGGCGCTCGCG 49957 36 100.0 33 .................................... ATGATCCGCGCACACCCCTCAACCCCGACAACA 50026 36 100.0 35 .................................... TCGTAGGACGAGGTCAGCACCCTCCAGCTCGGCTG 50097 36 100.0 34 .................................... CAGCTCGTCGAGGAACGGTCTCCAGCTCCGCGCC 50167 36 100.0 34 .................................... ACGACCTGGCCCCCGAGCAGCAGGGTGCACTCGT 50237 36 100.0 36 .................................... GGCGGGGACGCCGCGGCATGGCCCGCCGACATCCGG 50309 36 100.0 37 .................................... TGCATGCGACGCAGGCTGAAGAGAGGTGGGACGCGCT 50382 36 100.0 37 .................................... GAGGGGACGGAGTACCTCCAGAGCGTGATGTAGCCGT 50455 36 100.0 33 .................................... ATGAGCCTGCGGACACGGAGACAATGCTTCGGC 50524 36 100.0 33 .................................... ACAGGAGGGACTTCCTGTTTGAGAATCCTTCCC 50593 36 100.0 35 .................................... AGCAAGTTCGGCTTCGTCATCAAGCCCGCCACCAA 50664 36 100.0 35 .................................... ATGGTGTCCATGGGACTGGGGGATGGCCGAGACGT 50735 36 100.0 34 .................................... GAGTCGGGAGCGGCGACCCCCTGGGCAGCCAGCG 50805 36 100.0 34 .................................... GCCGAGAAGGCGCTGGCCGCCTTCATCGTCAATG 50875 36 100.0 36 .................................... CGCTCGCCGAGCCAGCGCATCACTGGCACAGCCATC 50947 36 100.0 34 .................................... GGTCAGTGCGCCAAGCTGATAGCTAAGCGCACCA 51017 36 100.0 35 .................................... AGATCCGCATCGAGTATGAGCCCCTTGGCGAGCTT 51088 36 100.0 35 .................................... AGCAACGTGAAGACGGGTGTGACCGTGGTGGTGAC 51159 36 100.0 34 .................................... AACCTCGGATGCCCACACGCGGGGTTGGCGCAGT 51229 36 100.0 37 .................................... TCGTCACCTTCGCCAAGCAGTCCGGGCAGATTCGCCT 51302 36 97.2 0 ......................G............. | ========== ====== ====== ====== ==================================== ======================================= ================== 71 36 100.0 35 GTTCCCCTGGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : ATCCGCGACCCGAAGCGGTGGCGCAAGGTGTACGAGTTGATGAAGGGCCACGGCGAGCGGCTCCAGTTGTCCGTGTTCCGTTGCCTGCTGACCGACCGGGACCGGGAGAAGTTGCGCTGGGAGCTGTCCAAGGTCATGGACAAGGAGGACACGCTCCTGGTGTTGGGTCTGTGCGGGGGTTGTGTCGAGCGGGTGAAGGCCATCAACCCCAAGGAGGATTGGCCGGAGGAGCCGGCGCCGTTTCGTGTACTCTGAGGCCGTCAAGCACCTGCCGGTGGCGGCGGGGGTCCGCTGCCGGAAACCGCCAAAAGCGGAATGAAATCAGGAACTTGACGGCTCTTTGGCAGGTGAATAGATGCTTGATCGAAGGATTCTCCAGCAAGGACGCCCGGTTACGGGGGCAGGCGGTGGGCCCCCGGGCCGGGGACTGGAAAAGGAAAGGAGGAGCGTGAAAAGCTGGGTCGTAAGTACGCGGAACCACAAGGAAATTGGCAGGGGCG # Right flank : CGTTTCGGGTCCACCGAGGGCTGCTCCTTGAAGTCGAAGCCCTCCGCCGTCCTCTACGGTGGTCCGTGCCGCTCCAGGTGCTCGAACACACGCGCGTCTACCTGTTCATGGCTCATGCCGCACCTCTCCGTGCGGCCTGTTCCACCACCGTTCCATGGTCCTGCGGCGGGCGCCCGCGCAGCTCTTGCTTGCTCCGTCCTCTGGGGCTCGGCGACCACGGCCTCTTGAAGCCCGAATCCGTCTGGCCCTTGGTGCGCGCGGCACGCACGCCTTCTTGCCTGCTCCAGCCGCCTTCTGTCCTCTACCGTTCACTGTTTGGTGCGAAACGCTGGATTCGACTTCCCTCTTTGGCCAGTGGCGAGATGGCCTGGGGACGAAGGAGAGGGGATGAAGGGGAGGGGATGAAGGGGAGGGCGCTCCGTCATCTTTTCTGGAACACACCGCCATGAAGTCGGCTAGCATGTTTCCCAAAATTCCCGTGGGGCGAACATGCCCGTCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCTGGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //