Array 1 132448-131992 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEF01000199.1 Streptomyces sp. NRRL F-4707 P445contig9.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132447 29 100.0 32 ............................. GCCGAGATCGACAACGTGCTGAGTGCCCTCCA 132386 29 100.0 32 ............................. TTCGGGAACGCGGCGGTCCTGGCCCGCTACGC 132325 29 100.0 32 ............................. ATTGCGTTTCATTGCATCCTTGACATGAAATG 132264 29 100.0 32 ............................. GCCGGTTTGGCTAACCGGCGTTTCCCGGCTAT 132203 29 96.6 32 ................T............ CTGCGGACCCTGGTCCCCGAGTCCCTCACCGA 132142 29 100.0 32 ............................. CGCGTGTGCCAGTTCTGCTCCTGCAGAGGTTC 132081 29 96.6 32 ........................T.... ACCTTCACGCAGTCCTACGGCTCGACGGAGCT 132020 29 86.2 0 ............TG.........A....T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGACACGCGAACGCCGGCGTGGCCTTGCCGATGTCGTGCACACCAGCGAGCCACACGGCAAGAGCACGCGCGTCCGACTCCCCTTGGGGCAACGCCCCGGCGATCAGCCGCCGCACCCCTACAGGCAACCACCGGTCCCACAACAGCCCCGCCACTGCGGCACTGTCTTCCATGTGCCGCCACAGCGGCAGCCACCCATCTGTCTCACGGTCATGCTTGGCCCAAACCGACCTGGCCGGCTCCCCAAGCCGACGCAGCAGGCAGGAACGGGCGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCCGGCTCCCCCCACCAGAACCAGAAAAGAGACGAATCCGCTGAGAGATCGCACTTCTCAGGCATACGATGATCGGCTATCTATGGACGCCTCTACGGAACCACCCATCACCTCATGCCCTATTTGCCGGAATCTGTAAAGGTTGCCGAAACCACGCCTCTGCGGCCATAAACTTGCAGGTCAATCAGT # Right flank : CTCGCCCCCGGCCACGGTCATGCCCGTGGCCGGGACCGTCTTCCCGGGTTCCGCCCAGTCGAGCCGGAGGACCGCAAAGGAGTGTCTCCATTTGTCGTCTGCCATGAGAACGTCAGCCGCTCTGCCACCTGAAGTGTCAGTCGTACGGTGCGCCGCCTGCGGGGTTCTACGCCCCTGCTCATGACCGGACGTATCGGCAGGGGCGGGCGTAAGGGGCAGACCCACACCGCCCCTCCCGAGTTCCGCTTGTACAGCTGGTCATTCGTCTGGGTGGTGATTGGCCCCCGAGCGGCTTTCGTTGCGCTGAATGGGGGACGCGCCCTCTAGCGTGCAGGCGTGACGACTTCGATCAACCCACCTCGTGAGGCAGAGCAGCCGTTCATGTGCCCGGACGTGAGCGGGATACGCGTGGTGGTCACGGGGGCCACGGGGTTCGTGGGCCGTCGATTGTGCCGCCGGATTGTTGAGGGCGGTGGCCGGGTGACGGCGCTGGTGCGGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142693-143271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEF01000199.1 Streptomyces sp. NRRL F-4707 P445contig9.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142693 29 100.0 32 ............................. GGACACGGACACCGGCGGCTCGTCGCCGAATT 142754 29 100.0 32 ............................. GACGAGGCCCGCCGCGCCCTGGAGAAGCGCGA 142815 29 100.0 32 ............................. GCCGCAGCGGGGTAGAGGCCCCCGGAGACGCT 142876 29 100.0 32 ............................. GATGAACGTGTCCGGGTCGGTGGCGGGGGTGG 142937 29 100.0 32 ............................. GAAGGGCTCACGCGTAGGTCCAAGGCGTGAGC 142998 29 100.0 33 ............................. CTGGGTACGGGCGGCCTCCAACTCCTCTCCCAT 143060 28 93.1 31 .......G.......-............. GCGTCCGCCAACTGCCGGCGGATCTCGCCGA 143119 29 100.0 32 ............................. AGGGCGTGATCATGCAGCGTGAGGACGGCTCT 143180 29 100.0 33 ............................. GCCCTCGGTTCGGTGGGTGCCTGGGTACAGGGC 143242 29 86.2 0 ............T....T....C..C... | G [143264] ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTACGCGGCTTCCTCACACGCTGGCTGCTGGAGATCTCCGCCGGAGTATTCGTCGGCAATCCCTCCGCCCGCATCCGCGACGCCCTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAGGGCCGCGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGACCCCAACGCCCCCACCGCCGAACCAGTTCCCCGGAACGGACCACCGTCCGGCTGGAGCAGAGCCTCCAAGCGCCGACGCTTTGGCAGAGGCTGATGCACTTCGAACACTTTATGCCCTATTTGCCGGATTCAATGAAGATGCTCGAAAACCGCCTCCGGCGTCAGTAAAAGCCCAGGTCATCCAGT # Right flank : CAGGTTGGGCCCGCTCCGTGGGTCTCCGGCCAATACCACCAGCGACTACCGGCACCAACGCGGGACCCAGTCAGCGCCCTGGAGCTACTTCATGCTCTGCCCCCGGGGTTGCGTCGACTGCGGGTGTGCGACAGCAGCCTGCTGGGGCTGCACGATCCGCTTCGCCTGTTCCTGCTGGACGGTGCGGCGTCCCGTCGTCTCCCGGGCGTGCAGGTCGGGGAACTTTTCGGCGATCGCAGCGCGCAGGGCCTTCTCGGCTCGGGCTTTGGCGGCCTGGGCGCGGTGGCTGGCGGCGAGCTTCCGGAACTCTCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCCATGCCGTGCCCGTGCCGGGAGGCGGCGGAGCGCATCTCCAGGAACCGCTCGGCGGCCTTGTCCGCGCGGTCGGGCACCGGCTGGCCTGCTGCACCGAGGGCTTGGGCGATCCGGTGGTCCCGGACGGTCTCCCATGCCCCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 146549-146093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEF01000199.1 Streptomyces sp. NRRL F-4707 P445contig9.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146548 29 100.0 32 ............................. ACACGACCGCCTACCCCGCTCATCCCGGTGAA 146487 29 100.0 32 ............................. TCACGCAGATTCCCGAGTTCGGGAGAGAAGCG 146426 29 100.0 32 ............................. AATGGTGCGACGCTCTGGACGCCGCGGCCCCC 146365 29 100.0 32 ............................. CAGCTCCGCGAGGCGTACGAGGACATCGTGCT 146304 29 100.0 32 ............................. TCAGAGCGGCGGCGAACTTCCCCATATGCTGT 146243 29 100.0 32 ............................. GACGTCGCCGGGCGATCCGGCGATCCAGCCGG 146182 29 100.0 32 ............................. TACTCGAAGACGGCGACCGTCAACCTGAAGGG 146121 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CTGGGCTCGGTGGTGGGGGCCTTGGCCTGTCGGCGAGTGTTGCGGTCTCGGCCCGGCGTGTCGCACACGACGCGCGCGTGCCGGTCGGCAGGGGGCGCGGTGGCTGATCGTTCGTGGGTTGGTGGAGGTGTGGGGGAGGGGGCAGAGGCCGGACTGGGGATCCGAGGTGGGGAGCGTCGCAGGTATGCCTGACCTCCCAGCGAAGATCGCTGCCGAGTACGGCGTCGCTGGCGTCCGGGTGGTGCGTCCCGGGCTCGGAGCCATACTCGTCACGGGGGGCTGGCTCCAGGACTTCGGTGCCTTGTCCTGTCTGGCTTACCGGTGGCCGGTCGAAGTACGGGAGTCGTTCGGCCGCCGCCGCTTCTCTCGTGCGAGCAGATCGAGGTGGCGGTTGGCCTCCACACGTGGAAGCCGCGGGTTGGCGTGTGTACTATTTGCCGGAATCTGTGAAAGTCGCCGAAACCGGGTCTCAACGGCTGTAAAGATGCAGGTCAAAGAGT # Right flank : TGCGCCGGGCAGAAGACCGAGGCCGATCGTGGCTGCTCCCCCCCCACCCGCGATCATGCCTGCGGCCGCGGCCTGTTTGCTATGGGCGCAGTTCGGCCGAGCTGGAGCACCGCAAGGAAGTGCCCCCAATCGAGGGGCTTCCACCGACGGCACGTGCCTGAGCCTCTCCTGGAAGCAAGATCAAAAATAGAGTAAGGACAAGATGCCGAGGAGTCCGTGCGCGGCCAGGCGCTGGAACGCTTCGACACCGGTACGGCGCAGCTCACCCCCGACCAGGCCGCCACCGCCATCGACGTCTTCCAGGTCGCCGCCGGGTTCGAGCTGTCCGCCGAGCAGCAGGCCGCGGTTACCCGGGTGCTCACCGCCGGGCAGGGCATCGACGCCCTGGTCGGCGTCGCCGGGGCGGGCAAGTCCACACTGATGGAGGCGTGCAGGATCGGCTGGGACGCGACCGGCACGACGCACGCCGGCGCGACCCTCGCCGCGGTCGCCGCCCAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //