Array 1 189820-191496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCQ010000007.1 Corynebacterium ulcerans strain 06-16 NODE_7_length_195014_cov_55.198038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 189820 29 100.0 32 ............................. ATCATGGAGGCGAGGCTTGACAAGCTTCAGGT 189881 29 96.6 32 ............................T ATGCCACAGGGTAGGTTTGATATTCGTGGCGT 189942 29 100.0 32 ............................. GCTGTGTGTTTTTTGTGAAGGTGGGTGGCATC 190003 29 100.0 32 ............................. TGAAGGAGCGCGATGTTCTTATTTCAAAGCTG 190064 29 100.0 32 ............................. GCAAAAGCGGCTCAAGGCTCAGCTGATCAAGC 190125 29 100.0 32 ............................. GTGTCATAAGCAGAAGACGCCCCACCAATGAG 190186 29 100.0 32 ............................. GCTAAAAGCTCAGCCCCGCTTTTCCGAATCCC 190247 29 100.0 32 ............................. AAAAATTTTCACCCAATCAGGTCCGCGTGTCA 190308 29 100.0 32 ............................. ACGGGGGCTTCTGCGACGGATAAGCTGAAAGC 190369 29 100.0 32 ............................. ATCCTCCTATCACCAAAAATAGGAGGGATCCA 190430 29 100.0 32 ............................. ACGGTCCGTGGGTCGATTGACATCCACAACAA 190491 29 100.0 32 ............................. CTGCGACCACCACGACTGTGACCCGTTTTTAG 190552 29 100.0 32 ............................. GCGTGGTGGATTCATTTTCACGCCGCGCTATG 190613 29 100.0 32 ............................. TGGCTGCTCACTGACGAAATAGGTCATGTATG 190674 29 100.0 32 ............................. GATATGGTCGAGGTGGAGTGCACGTCATTGTC 190735 29 100.0 32 ............................. ACTTCTGCCTGAATCCAGTAGCCGTACCATTG 190796 29 100.0 31 ............................. ATCAATGGCGATGTGATTGCCTACGACCTCG 190856 29 100.0 33 ............................. CATCATCGTGATGGCAGTGTGGCGTGCAACGTG 190918 29 96.6 32 T............................ GGATCACTAGCGGAAATCCGTGGAATCAGCGA 190979 29 100.0 32 ............................. GGGCTAGAACCCGTGCGTCTTGATCCTGATGG 191040 29 96.6 32 ............................T AGCTGTGCCCATAGGCGACAGTAGCGTAGCGG 191101 29 96.6 32 ........A.................... CAGTTGCGGTCGAAGCCGCTGCAGCGGGCTGG 191162 29 100.0 32 ............................. GCTGGTTTCGGTGTTGCGGCGAATATTGTTGC 191223 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 191284 29 100.0 32 ............................. AAGCTGGGCAACCCTCGACCCCGCTGGAAGCA 191345 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 191406 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 191467 29 82.8 0 ....................A...AGC.T | A [191486] ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.8 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 81944-82429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCQ010000003.1 Corynebacterium ulcerans strain 06-16 NODE_3_length_304051_cov_57.788704, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 81944 36 100.0 41 .................................... GACGCGGCCGTGAAAGAAGCGATCCGCGACGAATTCGGTAA 82021 36 100.0 41 .................................... CTGCCATGATCGCCAGCCCCCACGGGCCACCCAGTGCACCC 82098 36 100.0 39 .................................... TCTAGGACTTTTTCTATCGGCTGCACCATTTTTCCTAAA 82173 36 100.0 38 .................................... TGGCCAGCTTTAACCAGGGCATCAAAGAACGGCTTCAA 82247 36 100.0 40 .................................... CCATGTGATAGCCCCTATGCCCCTTCTTCCTCAGGCACAG 82323 36 100.0 35 .................................... GCGCTTGGAACACTCGCCCGGTTCGACATGATCTA 82394 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.6 39 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGACCTTGCAAAGATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTACTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACGTTTACTTACGAAGGCAGAAAGCAAGAGATCACTGACAACGAATTTCTGATTATCTAGCAGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTATGGTTTTCATAGAGCAACAACAATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCTG # Right flank : TAAAACCCCTCGGCGGTGTTGAACTAGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGTCTTCCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTATACCTAGTCCTAAGAGAAACAGCGAAACCCAGCCCAGCCCAACGCTAGCAGTATCACCAGAAAACTTGAGTATAAGGATTCCTAATACACCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCAGCGGAATGAGGCTGAGAATCGGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 153693-154211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCQ010000003.1 Corynebacterium ulcerans strain 06-16 NODE_3_length_304051_cov_57.788704, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 153693 29 100.0 32 ............................. ATTATGGCCTTGTGGCACCGGAATCCGTATTC 153754 29 100.0 32 ............................. CTATGGGGCCTACAGGGATCCGTGAAACTCGA 153815 29 100.0 32 ............................. GGCGAAACCGCCGGCGAAGCCTGCGATTGGGT 153876 29 100.0 32 ............................. TCTCTCCCCTTACTTACACAAACCAAGAAACG 153937 29 100.0 32 ............................. CCCCGCTGGGGGTTCCTAGCAGCCGCCTGGTA 153998 29 100.0 32 ............................. GAGTTGCAGAAGTTGAATGCATCGCTTGAGCA 154059 29 100.0 32 ............................. CGTGCTGCAGAAAACACTTTCCGCTGCCCCTG 154120 29 100.0 34 ............................. GCACTTAATCACATGGCTTCTAGTGGCCGCGATT 154183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 9 29 100.0 34 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : ACATTATGATGGAGATCCTCACTCCACATCTCCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATATGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCCTTTCAGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGAGCCGTCATGGAAAACCTTTGGGAAAAATGCCAATCCGTAGACCTAGCAGGATCTCTTACTCTGATTCACCCACAATATGATGCTGAGCAAGGGTTCAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATCTTGATGGTCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCAGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : CAAGCGTAGTCCCTAAAGGCTGGATACCGATGCAGGATTATATTGATCGGTTCAATACTAATGTTTTTATTGAGCCTTCCACTACGAAGCTTTATCAATCACGCTCTGGGGCTAAGGCCCGCGCTGATCTTCTTGAATCCTTTGGTTATAAGGCGATTGTGCAGCGTAGTGCCCCTATGGTGTGGCCTGAAGGCGATAACACCACCGTGAAGACTACCAAGATCAACGAAGTTTTTGCGACGATAAAAACGCTGGTCAATCATGGTGTTGTGAAATCCGCGGACAAACTTCTTTAACAACTGGCGGGAAATGGGCAAAAGGAAAGGCCCCAGTCACCACAACCGGGGCCTTAGCCAAAACCAAGTTCCACTATACACGATCTTTTAAAAATTAAAAGCCCGAATGGTTTCCCGTGGGTTCGATTCCCACGCCGGGCACTACGCACACCCTCGCATATTGGGGCAGTGCAGGTTATTTGAAAATTCAAAAGTGAAAGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //