Array 1 22095-21556 **** Predicted by CRISPRDetect 2.4 *** >NC_019679.1 Rivularia sp. PCC 7116 plasmid pRIV7116.01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 22094 36 94.4 35 T....A.............................. ATGTTAATGTTTCAAACTGAGAAAGGCTATAGTAT 22023 36 100.0 37 .................................... TCGAATATATTTTTGAACCAATAACCGAAACTATTGA 21950 36 100.0 37 .................................... GAACTTACGTAGAGATAAAGAGACAAAATAATTATTA 21877 36 100.0 39 .................................... CGTTTTCTGGAACAAATACAGTTAGAGTTCCTTCGGATT 21802 36 100.0 36 .................................... CATCCTAGTGAATACTTGACAATAGGGAAAATTTAT 21730 36 100.0 32 .................................... CTTCAGCAATTCCAGCTTTAGCAGGAGATACG 21662 36 100.0 35 .................................... TTGGAGATTTTCTCAATGTCCAGATGGACAGAGAA 21591 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.3 36 GTTTCCATCCCTATTAGGGATTAGGGGTTAGTAAAG # Left flank : ATTGCAACGCTGCAAAATTGGTTTGAGTCGTGACCCTCAAATACGGCTAGACACTTTTAAATCTTCTCAATTTCCGGTAGATGTGGAGATCATTACAACTATTTTTGTTGAAGATATGGCAGCTACGGAAGGTGAGTTACATGAGATATTTGACTTCTGTAATGTGAAGTTGGAAAAGTCTCGCGAGTGGTTTGACCTGTCACCTTGGCAGTATTACCGCTGCTTGTGGGCGTTCAAATCTAGAAAGTCAGCTAGTTTTTCAATATCAGAGCTACCTTTAACTAAGTTAATAAAAGCTAGTTTAGCGATCGCCCTTGTAACAACGCTCGGATTTGCTGCGTACACAGCAATCCCGGCTTTAGCTGGTAAAGATTCAATCGAAAAAGTAAACAAAAACTAGATTCTTGCACCAAGAAAGGTACGCTCTTAGGCTCGGACGATAGCCGATGCGGTGACGACTCCACAAGAAACCCAAGTTTTAATCACTTGGGTTATTTTTA # Right flank : AGTTCATGTGTGGAACCGTTACACTGAGCGGCTTTCAGGTACCCCAATCGACACCAGTCTAAAAAAGTAGAAAAAATTTCTAGAAATGAGTCGATTTAGTCGCTTGAAAACCTTACTGGGTAAGGTATCGACACCAGTCTACGAAGTTATAGGGTTTTCAAGGTTCTGACGAGTGGTGTCGATTTGAGCGTAGCAAATCTAACAACACATCGCTGTATGTAGTAAAAATATAGTAATTTCTTAGAACTGTCAACCGATAGATATAAAAGTTAACGATAACTAAACCGATGTCTAGCAACGAGTGTGTTCGGCACCGCTCGTAGACGCACTACAACTATTCGGCACTTACCCGCTTGGGCTTAGGCTCAGGTGGGATTTTTTGTATGTAGAATTCGCTACGATTAAAGATACATCTTTATCAGAACAAAATTACTGTATTACGTTCAAGCTCAACCGCATTCTTACTTTTTATCTTACTTTCTCGATTTTTCTTCGGTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTATTAGGGATTAGGGGTTAGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 62891-63284 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 62891 37 100.0 34 ..................................... CTTAAGTAGTATTAATTCTGAGAAAAATTCAATA 62962 37 100.0 34 ..................................... CCAATGACAAAAATATATGACTAAATATAAGAAA 63033 37 100.0 34 ..................................... ATTTAATATATATGGGAAAATCCCGCTTCTAGAG 63104 37 100.0 34 ..................................... AGAAGGCTTTAATCGAATGGAAATTCCGGATATT 63175 37 100.0 36 ..................................... TATAGAAAAAACCAAGATAATCATCAGCCAAGTCCT 63248 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTGAAATCAACTTAAATCCCTATTAGGGATTGAAAC # Left flank : TTTACTGTTTACTCTGCTTCAGTTAGCACGATGGAACAATTTAGATCCTAGTGAAGCCTTACAAGGAACAAACAAACGATTTATTCAGCGATTTCAAAAAATGGAAAATTTTGCCGAGCGTCCGCTTTCGGAATATAGCTTGGTAGAATTAGAAGAACTTTGGCAGCAGGCTAAGAAGGAATTGAAATAAAGCTCAAATTCTTACTGAGCAAGGGTTTAATATGTGTAATTTCAAGTACTGTTTGATTCGGTTTGCGCGGATGGGTAACTGTTTGAAATGCTTACTTTAATTTTTCGCTGAAACTCCTTTTGAGTAAGGGTTTCAGGCAATATGGCGAAAATCGCATCCGCGCAATCCCTCAAACCCTCTGTGTGTAAAGGTTTCAGCCTTTTTTTATCTTACTGTAGTTTGCGTATCAATCGCTCAAATGCTATATTTTATTTCATCCGCGAAACCGTACCTTGAAAACCAAATAGGAAAAGGCTTCCAATATGCCGCA # Right flank : CTTTCAATAATTTGCATAAGCCTAACTAATTGATTGTTGAAATCAACTCAAATCTTGCACTATCCTCGACACCGCCTTGGAATAAATTCCCAGGCTCATAAACAAAGTCTGATAAATCAGACTAGGCAAGGCTTTTAGTGCGTTTCAACGCGCTTGGTATATCAGCCTTGAAATTGATTTATCTGCGTTCACGCGGAGCGTGCGGGCTAGAAAGCCTCCGGCTTACAAGGCGGTTATTCGGGTTTAACGACAATGGTGGAAGATTTGAATTAAGTATTCAAACATGAGATAACTTTGCCGAAATTTGTAAATTAAGGCGATTTATAACTTGCTATTCTTAAAATCAATTCTCCTTGGTTGGGGTTTTTTGTAAATACAAATGCTCCTGTCTCTTTCTCACCTCTCGATAAAAATTCTATTTGCTGCTCTCCTGTTTCTTCTACTTTTCCGTTGAGACGTAATTCTGCTATTACCTGTACGGAAGCTGCTGTTTCTTCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 286960-291024 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 286960 37 100.0 36 ..................................... TGGGAGAAAGTAAGAAAGCACGGTAAAGCGACCCGC 287033 37 100.0 32 ..................................... TTGCTACCTGCATCTTTATTATCGGGCTTTAT 287102 37 100.0 35 ..................................... CTAGATAGGTAGTACCTACTGCTAAAGCTTGCCAA 287174 37 100.0 35 ..................................... TTATTAATCTGAATAACCTTCCTTGAAGTGTTGAG 287246 37 100.0 38 ..................................... TTATCTGGACCTTTTTGCCTGGAATACTCATACTCAAA 287321 37 100.0 36 ..................................... TGAGTATATCTGACTCAAAAAGGGCAGATTCAAGAA 287394 37 100.0 35 ..................................... AAAAAAAGACTATAAATCCTCAAATAAGTTGAGTT 287466 37 100.0 38 ..................................... TTATATCTACAACTTTTTTCTTCTCTTTCTATGAAAAT 287541 37 100.0 33 ..................................... TTAACAACTCTAAATACATCATACATTGTCTCA 287611 37 100.0 35 ..................................... AAATATATGAATCACAACAAACACAAAAAAGGAAA 287683 37 100.0 36 ..................................... ATCCTATTGATTTACATGTAAATAATGATAGGAAAA 287756 37 100.0 32 ..................................... CTCTAACAGATCTTTTTCGTAAATATTCCAAT 287825 37 100.0 34 ..................................... AGATTCCATCCCCGCTTCGATAGCGCTCCAGTTT 287896 37 100.0 35 ..................................... AATCATGGATTAAATTATTTAATTGGCGCATACAA 287968 37 100.0 34 ..................................... AAAATAAAAATATGAAAAAGAACAAGAAAAATCA 288039 37 100.0 36 ..................................... GCAAAATATATTTCTGGAAGATTTGCTTCGGAAATT 288112 37 100.0 34 ..................................... TTAGCAGATAAAAATAGTACACAAGCAGAAAAAA 288183 37 100.0 34 ..................................... CAAGCTTTTTACCGTTTGTAACACCACTAGAACC 288254 37 100.0 35 ..................................... TGAGAAACACGATGCATTCTGCTTGAATAAAAAGA 288326 37 100.0 35 ..................................... ATCCGCCAGTAATTTTACATTTATCTGCCAGTGAT 288398 37 100.0 34 ..................................... AAAGAATTTAGCACTACGGCTGCACCTGCTGAAT 288469 37 100.0 37 ..................................... TACTTTACCTTTCTTTAAAAGCCATTCCCACATCAAT 288543 37 100.0 36 ..................................... CTGGAAAATACTAGAATCATAGGCTTCAAACAAATT 288616 37 100.0 35 ..................................... CTCAATCTTGAAATCTTCTAAGCCTGAGCCTATGA 288688 37 100.0 33 ..................................... CAACATCTAAGGAATCCGTACAGCTTTGACTAC 288758 37 100.0 34 ..................................... TTGAAGCCTTATAGAAGCTTTTAATTGCAAGTTT 288829 37 100.0 34 ..................................... CTATTGAGATTAATGAAACTTGGGAAAATAACCT 288900 37 97.3 35 ..............C...................... AAATTGCATATTTTAGCCTAGACTGAGATGTAATA 288972 37 100.0 34 ..................................... CGTGACAATGAATCTCCACTTCTTTGCCCCTATC 289043 37 100.0 37 ..................................... GTTTAGATAATTTACATTAATCTTTGCACGAACTAAT 289117 37 100.0 34 ..................................... TGATTCAACTCTTGAGAAAACATTTGTCTATCTA 289188 37 100.0 34 ..................................... CTTCCTGAAAAAATGCAGGGAATAATCCACAGTT 289259 37 100.0 34 ..................................... CCCCGAAAAAACCAAGCCCAGCAACTCTGATTGA 289330 37 100.0 36 ..................................... TTAAATTTACAGCACATCAACTAAGACATACTTTTG 289403 37 100.0 34 ..................................... TTATGCCTGGAAGGAAATCAGGAAAGATCCAGAT 289474 37 100.0 37 ..................................... AATTGTCCTTTGGGACGATAAACTCTTAATGTTGCAA 289548 37 100.0 36 ..................................... TTAATAGGAACTGCTGTTATTGGTGGAGTAACTACT 289621 37 100.0 35 ..................................... CCTCCTTTTGTGTATATCTTTGCAATCTTCAGATT 289693 37 100.0 34 ..................................... ATTGTTGCTAAATGTATTTATAAAATCAACAGAA 289764 37 100.0 35 ..................................... TTATAGTAAAAATAATTGTAGATGGAGTACCAAAA 289836 37 97.3 35 ....................................T ATGGTAAAGTGTATGTCCAATGGGATAGGATACTT 289908 37 100.0 35 ..................................... AATGCTTTGCGAAATGCTAAACATTAACTTATATG 289980 37 100.0 35 ..................................... TAAAAGATTAATATTACAATCTTCAAAAATTGATA 290052 37 100.0 34 ..................................... TTTGTGACAGCCCTACCGATATGACCTTATACAA 290123 37 100.0 34 ..................................... CTTATGCTCCTGAAGGCGTGTTGTTTGTGGATGA 290194 37 100.0 35 ..................................... ATCAAAAAGATACGGGAACTTACAGAAAACAAATC 290266 37 100.0 34 ..................................... GCTAGCCTCAGCGTAAAACACCTTAATATCCTCG 290337 37 100.0 36 ..................................... AAAATAATTAAGAAACAAAAATAATCCATAAAAAAT 290410 37 100.0 33 ..................................... CTACAAGCCAATGCCCATGAGATTCTTCAAAGA 290480 37 100.0 34 ..................................... TAAGCAAATTCTAAAAGATAAATTTGATTTTTAT 290551 37 100.0 35 ..................................... AATACTAAGTTTGCTATGGCATCTTGCCTTATCAG 290623 37 100.0 35 ..................................... TCTGTAAGGACAGATTTATTACCTTTGCAAGATAA 290695 37 97.3 41 ................................A.... ATAATAAGCGCCACCTTCGTATACCTGCCCTTTTTGGGAGA 290773 37 100.0 34 ..................................... TATCAAAAATATTTCATTTGAAGAACCTTTCAAA 290844 37 100.0 34 ..................................... GAATAGATTCAACATATAATCCATCCAAAACTTT 290915 37 100.0 36 ..................................... AGATAAGTCTTTTCGATAACATTTTTTCTTACTAAA 290988 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 57 37 99.8 35 GTTGAAATCAACTTAAATCCCTATCAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTCAGTTACGATATTTCCGAAGATAAACGTCGCACAAAAATTCACAAAGTTCTTAAATCTTACGGACAATGGGTACAATACAGCATTTTTGAGTGTCAACTTACCGATACTCAATATGCTAGATTAAGAAGTCGTTTGAACAAGTTAATTAAATCCGACACCGATAGCATCCGCTTTTATTTTTTATGTGCCTGCTGCTTTGGTAAAGTAGAACGTATTGGTGGGGAACAACCTCGCGACGATAGTATTTTCTTTGCTTAATTCACGGATGGGTAACTGTTGAAAAACAGGTTTTGAAAAAAATGGCTGAATCCCATATGTAGCAAGCTTTTGAGACTAAAAAGTGTCGAGGACCATCCGCGAAGCTTACCCAGACTGGGTTTCAGCCATTCCGACCCTTCTCATTTCAACTTTCACGTGCTATGATTAACCCATCCGTGAAACCGAACCTTGAAAACCTCATATTGAAAGGCTTTCAGATGCCCACA # Right flank : TAATATCATTTTTTAAACTCTTTTCTAGTACTTCACCACATTAAATATCAGGAGAGATTAATTGGTAGGTAGTTGGACTATCTTCCCTATCCTATCTACATCTCATTCACAGCAGGGAAAGTGTCAACCATAAACAGCTTCTGGTCTAATAATCAAATCACCATTAGGACGACGGTCAATGACATAATATTGAAAACTATTGACAGCGACATCAAAGTGCTGCGCTAAACGCTGCTTGATATCTGTATCGCTCATATTTTGCTCTAATCCTAACTTACTTTGTTCTACATCGTAAGAACGACCTTCAAATCTGATATGAATCATCTTCAGTCTTTTTAAATTTAATATTTAGGAGGCTAAGAAATTTACCTTTTCCGGAGTTTTTTTAACTCGCAATTATCTATACTACAATTATAATACACAATGATAAAAACAGGCAAGTAAGATTGAAGCGGCAGCGACAGCTGTATCCGAAACTGACATCACAAAAGTGCGGATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 4247203-4246644 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 4247202 35 100.0 39 ................................... TTTTGGACCTGTTTTGAGCGGCTTGCGTTCTGCTAAAAT 4247128 35 100.0 36 ................................... ACAGCGTAAGGCATCATAACCCCAGAGCTAAATGTA 4247057 35 100.0 40 ................................... TTTACTCTTTCAATGTCGCTTTGCGACGCGTTTTCAAAAA 4246982 35 100.0 43 ................................... CTGCCGTTAGTATTTCCATCTACTCTAATATTAGTGCGAATGG 4246904 35 100.0 39 ................................... TAGTAAGATTTTGGATAAAATAACTTCCACCAACTAAAC 4246830 35 100.0 43 ................................... CCTAAGTCACCATTGCACCCAACGGTGCCGGAAACACACTTTA 4246752 35 100.0 39 ................................... TGCAAATATACCTAGAGTAGCAATAGAACCGAAAATAGC 4246678 34 88.6 0 .....................G.......A-...T | C [4246646] ========== ====== ====== ====== =================================== =========================================== ================== 8 35 98.6 40 GTTTTTAATCTTTAACCCCGTCAGGGGATGGAAAC # Left flank : TTATTATTTATACTTATGGCGATAATAGAGCATTAGAACCAATTCACTGGAATTTACTGAATAGCTATCAATGGTATTCCGTATGTGTAACTCCTCTTCGCTTAATTTCTGAGATTTTCAATATTCTTTCTACCTTCGATTTTAAAGACTAGCGCTAGAGTTATCAGCTATCAAATTAATCGAGTTTGACATAAGTAAATAATTAATGATGCTGAAATAGTCCTTCGCTGTACAAATTTTAATCAGTCTGTTATTATACTTCTCGTAATCGGAACCTTGAAAACCTAATAGTTAGTTTCCTAATTCATTTTCGTGGGATAGCACATAAGGCTGAAACTCCTATTCTTTCGTTGTATCTAGCGAAAGCATTGTTATACAAGGTTTTGAGTTAGGTTGATTTTGATTTTTAGCTGTTAAATCTGTTTTTTCCACTGCTAAATTTCCTATCCCACAAAAATCCGATTCTCAGGTCTTGTGAGATAAGGGTTTCAGAAGGTAGG # Right flank : ATCCACACAACCAAAACTGAATACAGAATAAAAACCGAAAATTAGAGATAATTAGTATGAATTGATTTTATAAAAACCCAATCAAAAAAAATATGTCTTTCAGCAGCTACAAAACCATCTCAGAAGTACTTAAAACTTTTCAAATCACCTATACAGAAGCCAACTTTATGGGTGAAGCTGAATTTAACATTCCCGATTACTTCCGAGAAGATTTAGAAACAGTAATGCGAGAAGGTGTTGTTTATAGTTCCGAGTTTGCTATCTGCGAAAATATTATTTATCCAGTATTAAAAGAAGTTTGGAAATTATATAATAGTAAATTCACCTTGTGGAGTCATCATTCACTCAATTACAATGATAATTTATCAGGTTTTCCCGAATATATTCTTGCTAAAAGGTCATCTTTAGGAAAAGTCGTATTTGATAAACCGTATTTTATTTTAGTAGAAGCAAAACAAGATGATTTTGAAGGAGGTTGGGCACAATGTTTAGCAGAAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTTTAACCCCGTCAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 4391013-4390691 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 4391012 37 100.0 34 ..................................... TACACCTTCTGTAAACATTCGACAATTTATTAAA 4390941 37 100.0 34 ..................................... TTACCACATAACTACAGGCAACACTTTGTGGTAA 4390870 37 100.0 35 ..................................... TGGATTTAGAAGAAGTAGGGGTACTGCATTTAAAG 4390798 37 97.3 34 .........C........................... AAAGGCTTTTTTGCCACAGCAATATAAAGTCCCA 4390727 37 91.9 0 .........C..............G...........T | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 97.8 34 GTTGAAACTAACATAAATCCCTATTAGGGATTGAAAC # Left flank : GAAGAAACAGGTTACCGCGCCCGAAAATGGCAGAAGTTAGGAAACTTTTTCCTCGCACCTGGATATTCCGACGAGATTATCTACGCATATCTTGCTGAGGATTTGGAAAAATTAGAAGTACCGCCCAATTTAGATGAAGATGAAGATATAGAAGTTTTATTTTTCACTCCCGCAGAATTGGAGAAAGCGATTTTAGAAGGGGATGCAGTTGACTCTAAAACTATTTCGAGTCTTATCTTAGCTCGCCCTTATTTAAGCTGAAATGATTATTTTGGCGCGGATGGGAAGGTGTAGAAAATTAAGTTGAGAAAAAAACGTCTGAATATTTTTGCCAGCAAGAGTTTCAGCCATTTTACAACATTAAGCCATCCGCGGCCCTTACCCAGAGCCAGTTTCATCGATTTTCATCCAGTGCGATCGCTATTTTTTATGCTAAAATCACTTCATCCGCGCAACCGAACCTTGAAAACTATATATACAAAGCTTTTCACATCTAAGCA # Right flank : GTATTTTATAGTTTACCCATAATGTGTCATCGCAAGCAAAGCGAAGCAACCACAGTATTTGGGATTGCTTCGCGCAGCGAACAATGACAGCTATTTCAAGAGAAATAATATCAACTATAAAAAAATAGATTCAGAAATTGAATAAATTGTTAGAAATATATCAGCGTTAAAACAATATAGATAAATAATAGGTAATTAGTGAAGAAGTTATATCAAACCGGTTTTGAATTTTAGCAAATGTCTGAAGTGCAAAGAATCAGAACTTAGCAAAATTACTCATTCTTTAATAACAAAATAGTAGAGACGTGGATTTAATTCCACGCCTGGGCAGAATTTAGTCATAAACAAATACGTACTCAAGAAAGTCGTTAGCTGTACCTGTGCCAACAGAAAACAAAATTGCAACATAGATAAACGCGAATAAAGCCAAGTTTTTGATGAATTCCATGATTAATATCTCCAAAGTTGATTTTGATTGATTTGTCAGAACATTAATTAAT # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTAACATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 5162566-5162108 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 5162565 36 100.0 34 .................................... AGCTGCTGTCACTGCTTTTTCAGTAGCAGAAGGC 5162495 36 100.0 32 .................................... TCTGCTGTTCCTCTAGTCGTATCACCCTGATG 5162427 36 100.0 33 .................................... TCGGCTTATCCTTTAGAGAGTAAGTTCTAAGAC 5162358 36 97.2 34 ................A................... TATCACCCTGATGTTATCGTGACCTTTTGGGGCA 5162288 36 100.0 38 .................................... TATTCCAAAACGCAAAGGATCTAAAGTGACGCATAATT 5162214 36 97.2 35 ............G....................... CTTCTCATTAAGAAAGTTCCTTTCGGGCACTTTCT 5162143 36 91.7 0 ................................GTG. | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 98.0 34 CTTTCCAAACCAACTCCCCTCAGCGGGGATGGAAAC # Left flank : ATTCTTGATTGCGCTCCTGACTACAATCAACTAAAATTCCTCTGCTAAAAAAGCTTGGTTTACACAACTTTCAATCCAACCTATAATTCTAATGGAAAAAATTCTATTAATATTGGCTAAGTGTTTGTTAAGTAGGTATTGTACTTTCAATCACAATATAAATGCTAATTTCAATATACTTGTCAATCATCGTAGATTCCTGATTTCCTTCTCCACAGGATATTTCCCCTATTTAATTGTTTCAATTTATTTCTAAGTAGTTGACTATTAATTTGATTACACTTAGATTATTCACAGAGTTGCGATACATCAAAATCGACGCATCTCGCCCGAACCTTGAAAACCCTATAACTTCGTTGAGATGCGTCGATTGCTTACACAGCAAAGCTTTCAGACGACGAAAATGGCAATTTTCTCGAAATATTTTTCCATTTTTTCGAGATGCGTCGATTGGGGTATTCCAAACCCCTGCTGTGTAAGGGTTCTAGAAGTGAACTCAT # Right flank : GACTATCAGTCGCTCACGAGAGTGAGTAGCTTGTAACTACTCCTGGTTAATGTCTGACCAGTACCTGCCCGAAGGGGCATCACGGGTAACTATGATGTCTCAGAGCTAGAGGGAAATGCGTAAAATCTACTAGCCGAAAAGTGGATGAGGCGCTAGGGTAAAATCATTTTTGGGTTAACGAAAGTGAATCTTTGACGAGGCACCGTGATGAGGAATTATCGAAACGGCTGACACGATAAATGGAGTTAGATATTTCGCCCTGTCCTCGGAATATAAGGCATCAAACAACTTCCGGTGTATAGAAGGAACCCGTAATGGTTGTATCTCTTGTGTGTGATATGAAGTAACCCCATTGAGGTCTTACAACTAGAATCGACGCTGTAAGTAGGGATTGGAGTAATCCGATTTTTAATTCCACAGTGGGTGTAAGACGCTACAAGAAGCGAATGCTGCCAAGCCCAACGGTAAACAGGAAATCATAACTGGGCAGATAGGTCTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCAACTCCCCTCAGCGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 5167506-5166890 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 5167505 36 100.0 36 .................................... AATCACAGCAAAATTTGCGGCTGCCATTTTTGCAAC 5167433 36 100.0 36 .................................... AGGTGAGGGGGTGGGCACTGGCTTTTCCTTCTTAGC 5167361 36 100.0 41 .................................... GTTCTAGAGTTTCCAGAATCTAATAAGCTAGCATTTGAGAA 5167284 36 100.0 38 .................................... CAATAGATGCGCCTTCCCATTGGATAGCGTCTTGATAT 5167210 36 100.0 33 .................................... TTTCCGTCTGCTGTTTCGTACACCAGAACTTCA 5167141 36 100.0 34 .................................... ATATAATGCCGGAATAATCCAACATCGGACGCTA 5167071 36 100.0 37 .................................... TGTGGCTTTTCTTGAAGCTACAAGAAGTTTTGGGTTT 5166998 36 100.0 37 .................................... TTTCTAATATAAAAGATAATAAAGCCTTTGCCTCGGT 5166925 36 91.7 0 ......................G........A..G. | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 99.1 37 CTTTCCAAACCAACTCCCCTCAACGGGGATGGAAAC # Left flank : TGTTGAATAAACTTTAACAATTTTGGATTTTGCGGAAAGTTGACGTGGAGACGTTTTTCGCGTCAAACTTTCTAAGACGGATTTTAGATTTAATCCAAAATCTAGCATTTAATCTTGGTTAAGTGTTTGCTAATTACGAGTTATATCATAAACTACATTGGAAGATGCCAATTTAAATCTAATTATCAATTACCATACACTCTTAATTTCCTGTTCCATCAAATATTTCACCTATTTAATTGTTTCAATATGTTTCTAAGTAGTTGACTATGAATTTGATTACACTTAGATTAACTACAGAGTTGCGATACATCAAAATCGACACACTCCGCCAGAACCTTGAAAACCCTATAATTTCGTTGGAGTGTGTCGATTGCTTACCCAGCAAGGCTTTCAGGCGACGAAAATCAACATTTGCCCGGAAAATTTTTCCATTTTTTCGGAGTGTGTCGATTGGGGCATCTCAAACCCCTGTTGTGTAAGGGTTTCAAAAGTGAACT # Right flank : CCTCACTCTGGAAGAGTGGGGCTAAACAAACTAAGCCCCTCTTCAGGGGCTAAATTAGGCGCATCTTTATAAATAAAGAAATGGTATAAGTGCAAGATTATTGATATCGATAAAATTTTAATTGATAAGCGAAGAAGTGGTAGGTTGGGTTGAACGAAGTGAAACCCAACATTATCAACCAAACGCAAGATTATTGATATCGATAAAATTTCAATTGATAAGCGAATAAGTCGCGATCGCCAAATTTAATATAATTTTAAATTATAAGTCGCGATCGCCAAAATTAATTGTGTATTTGTCATTACGAGTGAAACGAAGCATTCACCGAAGGTGTGGATCATCGCAACACTTTGAGATTACTTCGCTATCGCTCGTAATGACATAAATAATTTTACATACCTACTTATGAATGGTGGGCTTGTGGGATTTTTGATGAGCCACAAACTTCGGCAGGAATAACGATTTTAACAACGGATGTGTTTTTTTAATGGTAGGTTGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAACCAACTCCCCTCAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 7 6188352-6181145 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6188351 36 100.0 35 .................................... GATGAAGAACGTTGGCATTTATCCTTACTGGGTAG 6188280 36 100.0 38 .................................... GATGAATACATTCTTTTGGTTAGACATGATCAAATTCT 6188206 36 100.0 34 .................................... ACAGAGACGTGAAAGTTTCTAATGAACATACAAT 6188136 36 100.0 38 .................................... CTGATTTTAGGCACATTTTTTGCAGCTGCACCCGCAGA 6188062 36 100.0 35 .................................... ACTGAAGATGGGAAACGATCACACGCAAGCTCAAG 6187991 36 100.0 35 .................................... TCTTGATAATTTTAACATTGTATCTGATGAATACG 6187920 36 100.0 41 .................................... TATAAATATGAAGTTCCTAAAAAGTGTTCAACCATCAAAAA 6187843 36 100.0 35 .................................... AAAAGAGCTTGATGAAAGGCTTGCAAGAGTTGAGA 6187772 36 100.0 35 .................................... TGTAGGAGAGCCCGCATTTTCTGCATATATAAAAA 6187701 36 100.0 36 .................................... GGATACGTTCCAGATTTCTTCCTAGATGGTCTTAAA 6187629 36 100.0 34 .................................... TTTGTTGGAACATTAGTTGCGGTTACTTTTGTAG 6187559 36 100.0 38 .................................... TCCAAATGTTCAGAATTTTCTTGCAAATGAGATAAAGG 6187485 36 100.0 37 .................................... AGGCTTCCAAGAAGACCTTCTGCACGGAGGATCAGGT 6187412 36 100.0 33 .................................... GAGATTATCCTTTGTGGATCTTCCTCATCATAG 6187343 36 100.0 35 .................................... TTTAGCAGGTCGTCACTATATTTCCGAGAATACGT 6187272 36 100.0 33 .................................... TCTTTTTTTTTGGGGGGTTATTTGTTTCCTAAA 6187203 36 100.0 33 .................................... GTCAAGGAAGCACAGTCGTAGATTCATCTGAAT 6187134 36 100.0 38 .................................... ATTGCATTCATTAAGTTGTGTGCATTGACTAACCAATC 6187060 36 100.0 39 .................................... TGGCAGCAGGAACTTGCGCTAGGCGGCACATTTGATGTG 6186985 36 100.0 35 .................................... GTGGAAACGGCAATGACAGCATCTTCGGAGGTCTC 6186914 36 100.0 34 .................................... TTATACGATTTAGAAATGAAACGTAGTGTGAAGC 6186844 36 100.0 39 .................................... TATTCCGCTAAATACATGGAAACCATGGTTTCCCTTCTT 6186769 36 100.0 40 .................................... AATCCGAACTTAATAATTCTGGTAACTCTAGCATTGGAAA 6186693 36 100.0 35 .................................... ATATATCAGAAATCAAACGATTACTGATATGAATT 6186622 36 100.0 35 .................................... ATAATCAAGCAGTTGAAAGATTGCAAGAAGTGAGA 6186551 36 100.0 38 .................................... ATAGAGTGTTTTTTCTTTCTGCTGCAGAATACATTAAA 6186477 36 100.0 33 .................................... GAAAGAAGAAAATTTTGACTATGAAGATCAATC 6186408 36 100.0 37 .................................... TGCGAGATGTGGTAGTTGTATTATTCTTATTTAGATG 6186335 36 100.0 33 .................................... CACACCCTTCTAAGTGCGAGATGGAGGAAGAAC 6186266 36 100.0 41 .................................... TATTTTTTGGTATTTGTGGTTTTAACGTTAGTTGCAGCATT 6186189 36 100.0 31 .................................... CGGATTTGCAGGTTCGCAAAAAACCACTAAC 6186122 36 100.0 33 .................................... GACGTTGGTAGACTAATCAGATTAACTCCTAAA 6186053 36 100.0 38 .................................... AAGACACTGTGTTTGTAAAACACAATGGTTCTAATAGT 6185979 36 100.0 36 .................................... TCTTCTGATGTTAGAACTAAAGGCAAGTGTGCAGGT 6185907 36 100.0 41 .................................... GGATTGAAGAAACTCTTAACAAATTTGACGTTAATCAAGTT 6185830 36 100.0 34 .................................... TGAAATGTCTGGTAGTTCAGAAGCTAGTATAATT 6185760 36 100.0 33 .................................... TTGATATACGGGCAAGCTACACAACTTCTTTAA 6185691 36 100.0 36 .................................... AGTTATCAAGTTATCTGCTGCAATCCGCAATAGCTA 6185619 36 100.0 33 .................................... TTTTAGTTGCTGAAACAAGTTTTTCTCCTAGTT 6185550 36 100.0 36 .................................... AGGTAGGTAAAATTATGCCACAATCTAGTAAAGTTT 6185478 36 100.0 37 .................................... TTTTGTTCGGGTTAGAATGAGTAGTCGAATGATTAAA 6185405 36 100.0 36 .................................... AACCGCAACCGAAATTTCTCAAATTAGGAGATATTT 6185333 36 100.0 37 .................................... AAATGGAACTACAGTTTTTGAGATTGGTGGACTTACT 6185260 36 100.0 37 .................................... GTTGCTATTGTTGCAACTTCTTGCTTTCTCTTATCAA 6185187 36 100.0 33 .................................... ATTTTTTCTTTCTATAATTTTGTGGAGAAAAAT 6185118 36 100.0 38 .................................... CGCGTATTGCCTGTGGCTTACCACCATAGTTATAGCCA 6185044 36 100.0 38 .................................... AAACGTAATATTTGTTTATTTCGACTCTTTTAACCAAA 6184970 36 100.0 34 .................................... AGAGACGTTCATCTGAACGTGGGAGTTATATATC 6184900 36 100.0 38 .................................... TAGGCTATACGGAGAAAATTGCAAGTGCGATGCCAATC 6184826 36 100.0 33 .................................... AAAATTATTTTAAGTAATATTTTAATTTTTAAA 6184757 36 100.0 38 .................................... TTGCTGGTGCCTGTTTTGCTGCTCTTGGATCTGTTACA 6184683 36 100.0 34 .................................... AATTGACAAAAGTAACTACCATCATGCCATTCAG 6184613 36 100.0 34 .................................... TAGCAAAAAATTTCGCCCAATCGCTTTCAGTCGA 6184543 36 100.0 38 .................................... TTGCATCTGGCAAGTCTCAAAATCGCTCTTGGAAGCTT 6184469 36 100.0 38 .................................... TTTTTCCAAGCATGAAGGTAATAAAGATGTTTCCGATG 6184395 36 100.0 33 .................................... TTTTCTAAGATTTACTTAAAGATTGCTACAGCT 6184326 36 100.0 34 .................................... AAAAAATTCATTCAGCCTCATTGTGTGGGTTAGT 6184256 36 100.0 35 .................................... GTGTCTAGAATTTTTTCCAAGCATGAAGGTAATAA 6184185 36 100.0 35 .................................... CTAATAGGGAGCCCTCTCCCCAGCCGGGCCCTAGC 6184114 36 100.0 32 .................................... TCATCCCCCTACCACTCAAACAAATAATGGTG 6184046 36 100.0 37 .................................... ATAGGTTTATTTCTTTTTACATAGTGAATATTTTAAA 6183973 36 100.0 36 .................................... ATAATAAAACGTGCTTCAATTGGGATACATATCATT 6183901 36 100.0 40 .................................... TAAAGTTCAACAAGTTTTGAAAACAGAGCTTGGTGAAAAA 6183825 36 100.0 37 .................................... TTGCTAGGTTTGCAACAGGTTTCGCTAACAAAGTAGA 6183752 36 100.0 37 .................................... CAATTACAAGATTTTTCTTGTAAAGTAATTTACTAAC 6183679 36 100.0 37 .................................... AAGAATACATAGAAGAAAATCAAAGTTATGTAGCCAA 6183606 36 100.0 33 .................................... CTTCAGAATTTAAAACCGCTACAAAATATATAA 6183537 36 100.0 35 .................................... ATAGTCAGTGTTGCTTTAGGGTTTATTGCTCTATC 6183466 36 100.0 31 .................................... AAGAATTATAGCTCTTAATGCCGTATCTATG 6183399 36 100.0 35 .................................... GTGAACCCTGCTGTCGCTAATCCAGTAATGGAATG 6183328 36 100.0 38 .................................... TTCACCTGCAAAAGTTGTTCGTATTCGGTCATTTGAAA 6183254 36 100.0 36 .................................... TCATGCCCCCCTTGGTGAGCAGGAATTTGGGTTTCC 6183182 36 100.0 35 .................................... GATGATACCATTACAAGCACGGGCAACAATGTATG 6183111 36 100.0 34 .................................... GAACTAGGTCTAATCTGTGGACGCAAAGTTCCAG 6183041 36 100.0 38 .................................... TATTTTTTTTACGATCTGAATCGCATAATCCCTTGTTA 6182967 36 100.0 37 .................................... TGTTGCCCGTGCTTGTAATGGTATCATCACCATGGAA 6182894 36 100.0 32 .................................... CTTAAATTGAGGTAAGTCATCATGACTACACA 6182826 36 100.0 33 .................................... ATTAGGAATAAAGAAAATAATTCAAGATGTAAA 6182757 36 100.0 34 .................................... GAAAGCTGGTAGAGTCAATGCTGACACTGTTTTT 6182687 36 100.0 35 .................................... TGCTGTTGGGGGTTTTAACGAAAACACAGTTTATA 6182616 36 97.2 36 ..............................C..... GGGGGACACGAAGGCGCAATTATTGTCTTAGCTTAT 6182544 36 100.0 35 .................................... TTGCGGGAAAAAAAGTTTCACTTACTCGCCCAAAC 6182473 36 100.0 39 .................................... AAGCTGAACAAAAAGAAAAAACTATTCTTTCTCTTCAAG 6182398 36 100.0 35 .................................... AAAGGAAACAACAAGTGAAATTAAAAGCAATTAAT 6182327 36 100.0 40 .................................... ATGCTTTTGAATCGCTTGAAACTGCATTTAAAGCACATTT 6182251 36 100.0 35 .................................... TAAAAGTGGTTAGAGAAAGAAGAGAATATCACAGA 6182180 36 100.0 37 .................................... TCAACCTTCTCAAGCCCTTGCTTGTGGAGAAGTAATT 6182107 36 100.0 32 .................................... AACGATTTGTTGTTAGTTTGTGACTTACTTCA 6182039 36 100.0 38 .................................... CTAGATCTACTATGGTTTATTACAAAAATAACCTAAAA 6181965 36 100.0 36 .................................... GCTTTTAGGAAGTAATTTTTTGCGTTTCTAAAAAAT 6181893 36 100.0 37 .................................... TTGTGGCTTGCGGAAAGTCAAAAAACGCAGACGGAGA 6181820 36 100.0 33 .................................... TTGTCTTAGCTTATTGTTTAAACCAGCAAGTAA 6181751 36 100.0 34 .................................... CATGGTGTCCGTGGTGAAACCGTTGACACCCGCA 6181681 36 100.0 34 .................................... TGCCTACCCCAACAGCAAACCGCTTGCTCGTAGA 6181611 36 100.0 37 .................................... CACCGTGAAGAACCTTTAGGTTTTTACCGAACTACAC 6181538 36 100.0 34 .................................... TTATTTTTAAAGGATTGCTAAAATGTCTAACCAA 6181468 36 100.0 36 .................................... GATCAAGCAGTTTATAGGCTAAGTGCCATGCTTAGC 6181396 36 100.0 38 .................................... AAAGTTCTGTTATACGTGAAACTGGTGGAGACGATGAA 6181322 36 100.0 38 .................................... TAACATAATTGCTATCACTGGAAACTTCATTGGTAAAA 6181248 36 100.0 32 .................................... AGGTAACGAGTTAATATGCAAACTTCCCCCAA 6181180 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 101 36 100.0 36 GTTTCCAACTAATCCGAATTAACCCAATCGGTGGGG # Left flank : AAGATTACCATTTAATTATTTCGGTACTGAAACGATCACATTTTTATAACAATTGGCAATTCCAACCATCTGCGGCGGCAAGCTGCCGTGCAGAAATCCGTCCGGAATTTTATTTAAACTATAATTTTGCCTTTAGTTCAAAATTAAGGTGAAATCTTGCCGTTTGTAATTAAAAATATTGTAAGTAAATATGCTTGAAATAACGACATAGCATAGGAAATACCGCCCTTCTCATCTCCTAAGTTACCAATCTGCTGTTTCAGCTATAAAGAAACTGCGGTCAAATTAAAGTATAAGCTTGCCATTCCGGCAAACAATTTCTTTAAGTCACATATAGCTTTATCCTTCCAATTTGCGTCTTAGGACAAGTTATGCTTCCATTGTTAGAATTTGTTGACAATCGATTAACGCAACAATAAGGGTTTCAGCCCTTAAATTACTTGGTTATGCTTCCAGGGGCTGACAGCTTTTGGGTATAGTGACAGAACCTGATTACGAAG # Right flank : AGTTCGCTCAGCAGCCCTTACCCAGTAAGGGTTACAGGAGCCAAATCGACGCATCTCTGAAAAACATTATATATGAGCCCGAAAATCAAGCAAAACACCGACCTCAAACCCTTGCCTAGCAAGCAATCGACGCATCTCAACGGAATAATAGGCATTTGAGCGATTTGGCGAGATGCGTCGATTTTCATGTTCACTTTATCTCCGTAGTAGAACTAAAACCTATATTACATAGTAGTTTGGCGGCGCGTTAGGATGTTCGCTACCAATAGTAAGGACTCTGGAAACGGCATCCTCAGAAATCCAATAAAATCGCACGTTGTCTTCGGATGGTTTAACGATTTTTTTTGATTTCTCAAAAAGTTGTCGCATCTCATCCAAATTCAGAAAGCATTCAAATACAGAAAATTGTACTCTTTGCCCATAACCTTCTAAAAAGTTGGATAACTTAGTACGTCTTTTATCATTAGGAATATCGTATACAACAACCACTAACATTTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGAATTAACCCAATCGGTGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 8 6194395-6194644 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 6194395 34 100.0 39 .................................. ACTTTGGTATGTTGAATTTAAAAATTCAACAACTCACTA 6194468 34 100.0 40 .................................. ACTTCCGTATTTCCAGGGAATATGGTGGCATATATGTAAC 6194542 34 100.0 35 .................................. ACGCTGTGTAGTATTGTTTAACATATAATGAACTT 6194611 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ======================================== ================== 4 34 100.0 38 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAA # Left flank : ACTTTATACCGCTATGCTCCAGATTTATGTCAGGCAATTTCTGCTCGTTACTGGGATTACAAAAAACTTCTTCAACAACAAACTATTCAGCAGGGTATCAATGAAGTCAAACGACTGACTCCAGAACTTTATGCACAAGGAATAACTCCCAGTGTTAAAAATTTGGCTAGTGTTATGACTAATCCAGAAGCATTATGGCGTGAAGAGGTTCTCGAAACTTTAAGTGAGGTACGGCGTTCTCTTGGCGAACTACCTGAAAGATGACGAAGACGGCGAAGCCTTTACTTTTATGGAAACCGCAGTCAAATTAAAGTATAAGCTTGCCATTCCGGCAAACAATTTCTTTAAGTCACAGTCCTTTGCTGCCAAGTTATCCTTCCAGTGACAATTTTATACTTTTAAAGCAGAAGTGGAAGCACTTTGTGGCAGTACGCTTGTGGAAGTACTTCTTGGCAGTTACTGCCATCTTCTCGTTCAAGTTACAAGATGCTCGGTTGAAA # Right flank : ACAAGTAAAGAGTTACAATGACTTGCAATAAAAAAGCCTACCAATTTAAGCGGTAGGCTTTTAATATAAAAATTGGATGAAAAATCAAGCTGTAATTAACTTAGTAACTAATAATTCCGATAAAAACCTTTAGCCATAGAAACAACCCAATTAACCGCAATCTCACCCATACATCCATAGCCAAACTGTTTTCTCATTTCCATAGTTAATTCATTAATAAAAACGTCTCTCGCTACACCACCAAAATCACTTCCTTGAAGCATTGAAGAAATACCCGTAATAACTCTAGAAGATGTTCTATCGTTAATATTTCGTGCTGAACTACAGAAAGGAATTCCAGCGAATGCAATCAAAAATTTAGTCCCAGGATTTACATAATTAGCATAAAGTTTGTATCGAGATGTTCGGGAACCATAATTAAGCACTTTTATATAAGCATATCTATCTCTTCCAACAGGTTGAGTAATAACTAACTCAGTTTTTGTCCCATAACTCTTTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGATTAGTTGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 9 6213337-6212787 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 6213336 37 100.0 35 ..................................... TCAAATGGCAGATTCTCTTGAGAATTATGCTAAGG 6213264 37 100.0 37 ..................................... TTTTTTAGTTCAATGACAATATCTTATATTGAGAGTT 6213190 37 100.0 35 ..................................... TTGCTGTCTACTTCTTTAGTGAGCGTAGTTAAAGA 6213118 37 100.0 37 ..................................... CTGCTAAGTCTGCATTCGAGTTTTCAGGAAGACTTAA 6213044 37 100.0 35 ..................................... AAGAGTCTTTACTATCTTGGTTTGGAGGATTGGTT 6212972 37 100.0 37 ..................................... TAGTTACATTTTGCAATTTGTCAGAAATTGACAGCAA 6212898 37 97.3 37 .....A............................... TTGTATTCTGGGATGTCGCTTGGTTCGATTGGGTCAT 6212824 37 91.9 0 .......................A........A...A | T [6212789] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 98.6 36 CTTCCGCCGACTGGATTAAGTCGGATTAGTTGGAAAC # Left flank : TTACGATTGTCTTCCTAGCCGTTGGACAAAAGATGATATTATCGCTGATTTCACGGGAATGACTGCTCAGGGTAGTGTGGGAATGACAATCGCATCTTTATTAATGCGACAATCAAGGTTGCAATATACTCCAGCAGAATCACGAGATGGTAAACCTACTGGAAATTCTTTAAATCCGATTGAAATTGCGTTGACGGAAAAAAGATTGGCGCGAAGTAAAAAATTGAAAGAAATTCATTAAAATAAAAACTAGACACAACTAAGTAAACGTTTTAATCTTTTGATTGTGAGCTTGTTTTTTTGACGGGTCGAAGCGAGAGCTAAAACTAGGGGGGTTCCGTCAAAATCGCCGAAATTTTTATCAATAAATGGTTTCAGCGTTTTACATCTTGCAACAAGTGAAACTAATTATCAATAAGCGAGGCTGAAATGAACCTTTTTTTTAGACCCGTCAAAACCTGTTGTAGAATCCTTATCATGCAAGGGTTTCAAGGGACGGT # Right flank : AATAATTAGAAAAAACCCTCTAAAAGCTAATTAGAGGGTAATTTTTTGATTAATTAGTAGGATTATTTAACAATACGAAAAGTCGTCACAAAATTAGTAAGGATTATTATTAATATCATCATGTTGTTCGCCGTAATGATATAAATTCAATTTACCTTGGGAAGAAACACAAGTAACTCGAACGCTCTGAGTTACTCGAAAATGGTCAATATTTCCTTTGTTTGTATACTTGTCATATTTTATTCCTCCATGTTGTTTAAGAATCGCAGTATCGCCATTTGACTCATTCAATAAACGGGTAACATTAGCTAAAGTTTCTTGTAATTTAACTCGCTTATGTTTTTCCTTCACTCTGTTGTAATCAGCCCTAAAACTATCTTGATATTCCAATCTAGAAAAATTAATTAAATCTCCAGATAGTAAATCATCTTTACACTGATTCCAAACTAAATATCCCCAGGTTGAAAGGGTCATTTTTCCATCAACTTCACCTAACATTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCGCCGACTGGATTAAGTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 10 6326431-6326108 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 6326430 36 100.0 36 .................................... CACGAGGATCTACTGTATCTATTCCTTCGACCATAC 6326358 36 97.2 35 ...................................A ACTCTTCCAAATCTTCTAAAACTTGAGAACTAGCT 6326287 36 100.0 37 .................................... AAATTAGTATTTGTGTTAGCTTGCAGATTCAATACTG 6326214 36 100.0 36 .................................... TCCACTTTAAGAAAAGATGTTTTCTGCTTTCTGTGT 6326142 35 88.9 0 ..............................-..TGA | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.2 36 GTTTTAAATTAATTCCCCTTCACGGGGACGGAAACT # Left flank : CTCAAGTTTAGTTGGTTCAATATTAGAAGGCACACTTTAGTCAAAGGTGATGCTTCTTATGATAACCCAGATTTGGTTAAATATTGGGAGTCAAGAACTAAGAGAAAATCTCAAAATCTAATTCCTTCTTACCAAAAGCTAGCCCGAAAACAAGGATATAAGTGTTGCGTTTGTGGGGAATCATTGTTTAATGATGAACCAATTCAAAAACATCACAAAGTTCCTCAAAGTAGGGGTGGTAAAGATACTTACGCTAATCTAGAATTGATGCATTACTACTGTCACCGACAAGTACATTCAGTAGCCCCTGGGTGTGAAGACGAGGTATTTGTGCAGGACTTACAAGAATTAAACCCAGTCCCTGGAAGCGTTAGGATTGGCTAAAGCCGGATGCTTGGTAACTTGCTTGTCCGGTTTGTCGGGGGGAAGGGGGTAGCGATATCCCTGACCCACCCATTAAACTCTAGCAGTTCCAACTGATGATGCTTGGGAACTTCTAA # Right flank : AAAAAAACCGCAGAGGCGCAGGCAGAGTACGCAGAGGAAGAAGAGAGAGAAAATTAAAATATTTTCGATAAAATAAGATAAATCTCGATTAATAATTTACAGAGAGCGAAACTCGGTGCTACCTTTGCGAAACTTTGCGTTTAAAAAACAAAAGTTATGAACAACAACACCTCTCAAAACCTCGAAGAAATAAACCAACTCAACCGAGAAGTTGTAAGATTAGCCGGAGAAGGTGATATAAAACAAGCAATATCTATCACCAAAAAAGCAATTAAACTAACTAAAGAAAAAATCGGCGAGCATAAAGTTTTAGCAGACAGCCTCAATAACCTCGCAGAATTATACCGAATTCAAGGTAACTATCCAGATGCCCAACCATTGCTGATTGAAAGCACAGAAATGAGAAAGCAATTGTTGGGAGAAAATCATCCCGATGTTGCTCAAAGTTTAAATAATCTAGCTGCATTTTATGTAATTCAAGGTAATTATCCTGAAGCTGA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATTAATTCCCCTTCACGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 11 6329394-6328927 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 6329393 35 100.0 41 ................................... ACTTTAAGAGTTTCAGCAGGACCAAAAATTTTCCGCTTATT 6329317 35 100.0 37 ................................... TATCACCTACCACAGATGTGGATTTTGTAGAAATATG 6329245 35 100.0 38 ................................... TTTTCCCACATCTTCTACACTATTTGCATGCTGCAATT 6329172 35 100.0 35 ................................... TTTCAATGCGGCAATTGGCGACAATGCGGTTTTCA 6329102 35 100.0 35 ................................... GCCAATACGATCAAAAAGTAAGTAATCTCTAACTT 6329032 35 100.0 36 ................................... CTCCTTGGTTCACGATCTGGTATTGAGCTCTACGAA 6328961 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ========================================= ================== 7 35 98.8 37 GTTTTAATTCCTTAACCCCTTACGGGGATGGAAAC # Left flank : GGCGTGAGCCGTAAAACGATAACTGTTGATATAGAGATATCAGTGGTTATACCAATTCTGTATGAGGCTGCGCTTAATCGCCCTCAGCCTGGAAGGCTGGGGCTACTGAAACTAAGCCCGCCTACGCGGGCTAAATTAGGCGCATCTTTATAAAGAAATGGTATTAAAGATTTTTAATTTTGGCACTATGAAAATTTTTGAGTTTTTTGTTATACTTTATCCAGGAAATTACAGAACCTTGAAAACTTAATTATACGTTTCCAATTCATAGCAATTGTGTTTGTTTTGACAGAGCATACGTAATATTTTAGCGGGGGTAAGGCGATCGCCGAAATATTGATTCTTCTGTTACCCCCCGCTAATTGACTACTACATGGTGCTTTGAGGCTGGTGTTTGGATTAGTTTTTATCAAAAATTTCGGTTTATTGGTTGTTAAATTAGACCCCCGCTAAAATGGCACCTTGAAATCCAGTTATAGTAATAGTTCTAGAATGGTAGG # Right flank : GACTATCAGTCGCTCACGAGAGTGAGTAGCTTGTAACTACTCCTGGTTAATGTCTGACCAGTACCTGCCCGAAGGGGCATCACGGGTAACTATGATGTCTCAGAGCTAGAGGGAAATGCGTAAAATCTACTAGCCGAAAAGTGGATGAGGCGCTAGGGTAAAATCATTTTTGGGTTAACGAAAGTGAATCTTTGACGAGGCACCGTGATGAGGAATTATCGAAACGGCTGACACGATAAATGGAGTTAGATATTTCGCCCTGTCCTCGGAATATAAGGCATCAAACAACTTCCGGTGTATAGAAGGAACCCGTAATGGTTGTATCTCTTGTGTGTGATATGAAGTAACCCCATTGAGGTCTTACAACTAGAATCGACGCTGTAAGTAGGGATTGGAGTAATCCGATTTTTAATTCCACAGTGGGTGTAAGACGCTACAAGAAGCGAATGCTGCCAAGCCCAACGGTAAACAGGAAATCATAACTGGGCAGATAGGTCTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTAACCCCTTACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 12 6751356-6752970 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6751356 37 100.0 36 ..................................... ATAACGAGGCAGAACAAGCAAGAAAGCAATTAAAAA 6751429 37 100.0 34 ..................................... ATTGAATTGTAGTGTTGTAATGTTGTATGTAAAT 6751500 37 100.0 34 ..................................... AATCGGGCAATGGCAAATGATTCACAACAATGGG 6751571 37 100.0 38 ..................................... ACCTTTAAGAACAGTGAAGTTGCTAAGGACTTGTTTAG 6751646 37 100.0 35 ..................................... TATGGTACGCTCTTTTTCTTGCTTGGGATTAATAG 6751718 37 100.0 38 ..................................... TTAATCTATTTTCTATCTTGCCGCTAGAATGATTAAAA 6751793 37 100.0 35 ..................................... TAATTATCGCGTTAAGGTTAAGGAATTGTTTACAA 6751865 37 100.0 33 ..................................... TATTTAGGATGCTTTACCACGGCATCCTTTTTG 6751935 37 100.0 33 ..................................... AAGGAAGAGAGTATAGATACAGTTTGCAATCAG 6752005 37 100.0 35 ..................................... AACAAGCCTCAAACCTAGTGATAGCAGTCAATTGT 6752077 37 100.0 36 ..................................... CTTATCCTACAAACATGACTACATTTTCTTCTGCTC 6752150 37 100.0 34 ..................................... CTATTATGGGAAGGGGGAGGATTTCTATTATCTC 6752221 37 100.0 34 ..................................... AATTACATCCTGTATTTGCTCTTTCTTTGAATTA 6752292 37 100.0 35 ..................................... ATCAGTCTTTAATTAGATATAATCATTTAAAACAA 6752364 37 100.0 33 ..................................... ATATTCTTGCTGCAATTTCAGGATGCACTGTAT 6752434 37 100.0 34 ..................................... TTCAATCGCCTTAAAGGAGTCTTTAAACGCTTTA 6752505 37 100.0 33 ..................................... TTTTAACTTCTAGAGAAGCTTTCTCAGATTCTC 6752575 37 100.0 34 ..................................... GATGATTTTAGACATTTGAATAGTTTGAAGAATA 6752646 37 100.0 35 ..................................... GGTACTTTGAAAGTTTGTGAGGAGAATGAAATACT 6752718 37 100.0 35 ..................................... GCATCAACCAACTTTCCTTACTGCCATTAGCTGAT 6752790 37 100.0 35 ..................................... TTATAAGAATTTGTGTAAGCATTATGGAAAAGTAG 6752862 37 100.0 35 ..................................... CATAACCTCTCAAGATAAACCTCTGAGGAGAAAAA 6752934 37 94.6 0 ............................A...A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 99.8 35 GTTGAAACTCACCTTAATCCCTATTAGGGATTGAAAC # Left flank : CAAACTCTTCTCTCGATAAATCCATAGTAACGAAATGTTAAGCATTTTTAATATTTGTAACTGTAGTGGTGTCCGTCCGTAAAAGTGCGGTTATGCGAATTGAGAGCGTCGCGTTTATATAGCCAATTATCCTTCCATCGCATTCGGGAGAGTCTCAAGCAAGTGCCTTGTAATTTCGCTAGAATATTTAGCCGCATTAAGAAAAAGCCAGTAAACATTTGGAATCATTTAATGTGAAATAAAATGTAAATTATTGCTCTTTACCCAGCAAAATTCGCGGAAGGGTAAGTGTTGAAAATGGAACGATAAAAAAAATGGCTGAATTGCTTGATATATATAGGTTTGAAGCTCTTCGGCTTGACGAACCATCCGCGCGCCTTACCCAGACTGGATTTGAGCGATTTACCCCCTTCTCAATCTCAATTTTTCATGCTAATATTTACCCATCCGTGAAATTGAACCATGAAAACCTTATAGTAAAAGGGCTTCAGAACCCAGCA # Right flank : CTATTGCTTGCACGCAGCTAATTAATCGCTTGAATAGGGAGCTAAAGCTAGGTTTTTGTTGCTATCAAGTAGAACGCGATCGCAGAGTTTAAGCAGTTCTAACTCAGTCTGTGTCTTTCGCATCAACCGCAGAAAATGACCTTCAGCATCCACTAAGAGTGCGATGTAATTAAGGTACATTTTGAGGTGTCCCGCACGCGCTCGCGGTGGTGTTTTTACCGCTTCGGGAGTTTGCCGTAAACGGTCAATATATTCGCGTACTTCGACTAAAGGAACGAGCGGAATCGGCTCAGAACGCAAGCGGAGGCGAATTTGATTAAAAATCCAAGGATTGGCGATCGCCCAGCGTCCTACCATCACACCTGCCGCACCCGTTTGAGAAAGCACCTTGAGGGCAGTTGCAGCAGAATCAATATTGCCGTTAGCAAGCACCGGACAATTAACCCGTTTGACTGCTTGAGAAATCAAATCGTATTTCACTTGTCCGCGATACATTTCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTCACCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 13 7450340-7451660 **** Predicted by CRISPRDetect 2.4 *** >NC_019678.1 Rivularia sp. PCC 7116, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7450340 37 100.0 35 ..................................... CCAAGTCTTAGTAATTACAGCCATTTTGATTTTTT 7450412 37 100.0 34 ..................................... CTACCACGCATGATTGCGGATTTTAACACAGCTT 7450483 37 100.0 35 ..................................... AGAAAAATATTTAAGCTATTCGAGGCTGAATTTTC 7450555 37 100.0 33 ..................................... TTATAACCTTTGCTTGTTTGCTCAAGTACTAAA 7450625 37 100.0 35 ..................................... CAGAGCTTTCAACTGCCTGCATAGGTTCAGAAGTT 7450697 37 100.0 34 ..................................... CAGGATTATTCCCAGGCTTTCTCATAGTCACTAA 7450768 37 100.0 34 ..................................... GAAAAGTCCTGCCCAGTATACTTGGGACAGTATC 7450839 37 100.0 34 ..................................... TTAAGATTGAAGCGGTACGCTACTTTGTTACTAA 7450910 37 100.0 35 ..................................... TTAGAACCCGTTGCCGCTTAACCCTCACTCCCAAC 7450982 37 100.0 33 ..................................... ACTCTGATTCTTGCGGGCTCAAAAACTCTTTCC 7451052 37 100.0 34 ..................................... AAATTACTTTTCTACACAGGTGCTAGACCTTCAG 7451123 37 100.0 35 ..................................... GTGGGGTGAGTACTTCTAAAACATTCACCACATCT 7451195 37 100.0 35 ..................................... TTTTAGCTTTAGATAATGAATCGATGGCTAAAAAG 7451267 37 100.0 34 ..................................... GTCGCTGCAAATTTCTCTAATCCGGCAACGAATT 7451338 37 100.0 34 ..................................... TATTTGTTAGCATCAATATATCACACCTGTAGAT 7451409 37 100.0 35 ..................................... AAAATTTCTACCTAAAGAGCTATTTGTTGCTATCT 7451481 37 100.0 34 ..................................... CACTTCTTGAGCAAACATTTGGCGATTCACTTTA 7451552 37 100.0 35 ..................................... GTTTCCGCTTCGACTCCCGTACAGCCTCAGCTTCC 7451624 37 97.3 0 .........G........................... | ========== ====== ====== ====== ===================================== =================================== ================== 19 37 99.9 34 GTTGAAATAACCTCTAATCCCTATTAGGGATTGAAAC # Left flank : TAGGTTGGTTCCTCGGTAGTTTAAGTTATGCAGCTTTTTCTGCATACGCACATCAGCTACAGCATGAAAATCCTACCAAGTGTTTCTGGATGGAAATGCCGGTGCATTACGTACATCATAAATACGGGATGTGGGAGCATAACTTTGGCTTGGCTGTAGATTGGTGGGATCATGTTTTCGGTACTTATAAGCCTGTTGAAGAATGGATGGGTGAAAAAGAAATAGCGCTATCCCAACGCGGTTATTTACAGTTGAAGTGGTGGTAAGATTATTTTCGCGGATGGTAAGGTGTTGAAAAATAGGTTGAGAAAATAATCGCTGAATCCTACTCTGAGTAAGGCTTTGAAGCTTTCTATCACCTCTACCCATCCGCGAACCTTGCATAGACTGGGTTTCAGCCATTTTCCACCTTCTCTATTTCATTTTGATATGATAATATTAGGTCATCCGCGAAACCGAACCTTGAAAACTACATATTTAAAGGCTTTCAGATGCCCGCA # Right flank : CTTATAATACAAACTTTAGATGGGATTCTAATATCATTCATTATTTACCGTGAAAAGGTTCTAGTTGAAACATGTTTTACACTGTTCTTAAGACAGCCTTGGAATAAATTCCCAGGCTCAAATACAAAGTCTGATAAATCAGACTGAGCATAGCTTTTAGTGAGTTTCAACGTACTTTGTATATTAGTCTTGAAATTAATTTCTCTGCGAGAAAGCCTCCAGCTTGCAAGGTGGATATTTAGAATTAACGACAATGGTGCAAGATGTCAGCACCTAATTAGCAGCGTTACGCTTTAGCGTCAAGCTCCGCTTATCGCTACAACTAAATATGAAGCTTATACATTTTTTGTTCGGCTATAAGCCTTATTATTTGGGGCTTTTTAAATAATGTGTAAGTTGACAAATTTAAACGACTTTTGCTATTGCTTTGGAATTGATTCTAAAGCGATTGTAATGGCTAATCAAAAGAAACCAATTAAATTCTGACTATTGGCTATTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAACCTCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //