Array 1 25-1787 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYB01000034.1 Raphidiopsis brookii D9 D9_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 25 36 100.0 40 .................................... GTCGTACAAAGCAAAGATAACCTGAAACACAATCCGATGT 101 36 100.0 39 .................................... AACTACAAAGACCTCGAGTGTGCTTCCTTCAATTCCTAC 176 36 100.0 38 .................................... GATGTCAGCTTTAATAACTATCACGTATTCTTTTTAAA 250 36 100.0 32 .................................... CCCTTTTTTAACCCCCTATACAGCCGCTCAAC 318 36 100.0 41 .................................... TACGTAATAGGGCAGTTTTACCGCCTCCCCCCAGACGTTTC 395 36 100.0 43 .................................... CGTTAATAGCTGATTGTGACCAACACCTCTCTCCTGTAGAGGT 474 36 100.0 38 .................................... GAACCCACCTGCTGACGGTTTCTCCGTCATGTGACAGC 548 36 100.0 35 .................................... TTTTGGGATTCCAAGTATTCGGCCAACAAAATCAG 619 36 100.0 40 .................................... GAGGTTAAATCGTTTATAGCTTGGAGGGTATTTTTGTTTT 695 36 100.0 46 .................................... TAGCAATAATTTATAAGCATCTACCCACGCACTACGACTATCTCCA 777 36 100.0 42 .................................... AGCCTTGGCCTTGGCATCAGCCTCAGCCTTGGCATCAGCCTC 855 36 100.0 39 .................................... AACAGATATTTTGCGACGTGGAATATATCCATAGTATCC 930 36 100.0 39 .................................... ATTTCCCAGTGAGACCGAGGATAGTAATCTTGCACCTCT 1005 36 100.0 44 .................................... GGACAGCGTGAGGTAGTCTGTCAGGGCTATTTTACCATTAGCAA 1085 36 100.0 39 .................................... ACTTGTAAAGAATTCATGTTCTTCTTGTTTTCTTTCCCA 1160 36 100.0 40 .................................... ATTTTTACATGCAAGTGCAAAAATATTACACAACACATAA 1236 36 100.0 37 .................................... CTGTTACCATAACGTTCCTCCCCTCCTCAGGGTTTAA 1309 36 100.0 41 .................................... TTAACCCATTCTTTATTTGTTCGAAAACTATGTCTGAACAT 1386 36 97.2 34 ..................................C. TTTGGTATATGCAAACTGTGTCCCGTTCCATTCG 1456 36 100.0 37 .................................... AACTTTCTTGGGGTAAGGTGCTTAATTGCTTCGTACT 1529 36 100.0 43 .................................... ATTAGCGCTATTCAATTTTGCACCGGCTAAATCGTAATCTCTT 1608 36 100.0 35 .................................... GTCATAGTCTGTCAACATAAATCACCTCCTAAGGT 1679 36 100.0 37 .................................... CTCTTCGACAGCCTGAAAGGTGAATAAGCAAAGTGGC 1752 36 88.9 0 ..............................A..TGG | ========== ====== ====== ====== ==================================== ============================================== ================== 24 36 99.4 39 GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : GGGGTAAGGGATTAAAATGGAGGGG # Right flank : GGGTAAATGCTAGGGAGGAAAGAAAAAACTATAATTTTAACGGGGGTAAAGGGCGATCTCGCGTAGCGAGTGCTTTGCAAACGCGCTGGGAGTACTTCGTAAATGCACTGGATATTCCCTTACCTCCCCGTTCTCAAGGGAAATTTGTGAACATGGTTGGCGAGCGATCGCACTTGGTTTATGAGTTTGAGGAGGGCGATCGGCGTTGTGGTAGGGGTTCTAAATTATTGGCGGGGATGAAGCCAGTTAAAAAAGGGAACAAACCACCACTGGTCAATACTGCGCAGTTCTTTACAGGCAAACTTTTCTGCATCTTCTGTTCTTAGCCAACCTTCTTCTTGTCGGTTGGCTACTTTTAACATGATTTCTCTAGTTTCCAGATCTGCTTCCCTAAGGATGCTGCTGTTTCTTGCTCCATGGTTGTTTATATGAGATGATGGTTTGTTTATTAATTGATATTATCATGTGGAGTCCTTGGCAAATGCCTGAGAGAAAGGTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5448-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYB01000045.1 Raphidiopsis brookii D9 D9_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 5447 36 100.0 33 .................................... CACTAGACACAATAATTATTGTTTTAATCTGCT 5378 36 100.0 36 .................................... TAAGAAGTCCACCTCCTCATGGAGGTTTTTTGCTTG 5306 36 100.0 39 .................................... CCCTATCTTGCCCAGCTGGTATAGGGGGTTGATTAATTT 5231 36 100.0 38 .................................... AACTATGTTTGGAAGAAAAGTTAAAAGAGTTGCGTCTG 5157 36 100.0 36 .................................... TTTGTTGACACTTTTAGTTTAGTTTCAGTTACCTCG 5085 36 100.0 37 .................................... TCCCACGCTTAGTGCTGCTTTTGTGCTTTAGCCTCAC 5012 36 100.0 34 .................................... TGAATTATAAAGTCAAGTACATTCAGAACGTAGT 4942 36 100.0 38 .................................... TTTGAACATAGAATAGATACATTATTTTCCTCCTCGGA 4868 36 100.0 36 .................................... GTTGCATTAGTTGCTGGAGATCGTGTATTAGTAAAA 4796 36 100.0 37 .................................... TACTAACAGTTAATACATTAGAGTCTCCGTTATTATG 4723 36 100.0 39 .................................... TCAGCTGGAAGTCTGTGTCAGTTACCACAGCTATCACTT 4648 36 100.0 36 .................................... GTGAATACTGTGTAACAGTCTAATTTCATATTCTCA 4576 36 100.0 48 .................................... ACGCCAGCAAGGGCCAGCATGTGGTAGTCGCTGACGGTCATTTTACCG 4492 36 100.0 41 .................................... GCTTTCAAAAAAGAACTACTGTTCTTTAAAAAGAACAGTAA 4415 36 100.0 42 .................................... TTCCTACTTGAGTTACTAAGAACTCTGTACCAAATTGAGAAA 4337 36 100.0 38 .................................... ATGGCATTCTTGAGTTTGTCCGGCACCTCTCCATTACT 4263 36 100.0 37 .................................... CCCTGGAGCTGAAACTTTTAAATTTTCGTAATAAATA 4190 36 100.0 36 .................................... TGTCTACATCTTCTAAGACAATTACTCTTGAAAGGG 4118 36 100.0 36 .................................... GTTCAATGGTTGGCTCTTGCCAAAACATCTCGGGAT 4046 36 100.0 38 .................................... CTTCTCTATATAGTAACAATTTACCCCCTATTTCTAGT 3972 36 100.0 36 .................................... ATTCATAGAATGCGCTATTATTTAAATTCGTATGAC 3900 36 100.0 36 .................................... CCTCTAACATTGCTGCTCTATCAGAGCAGCAATGCG 3828 36 100.0 37 .................................... GTAATCAACTTTAAAAGTCAATACACAGCTAGTGACA 3755 36 100.0 39 .................................... AAATACAAATGAATGTATTTCTCTCCACCGCCAAATACG 3680 36 100.0 35 .................................... TTGTAGGTTAGCATTTGATAAATCGGCATTGCTTA 3609 36 100.0 35 .................................... TTCTCTTTTCATCTTTATTCATGGTAGTTCCTCGT 3538 36 100.0 40 .................................... ATCTCACTCGCTAAATGGCGCTCATTTCATCTCACTATCA 3462 36 100.0 38 .................................... GAGTTTTTTCATTCGGGTATTAAAGTCTAGGTTAAAGT 3388 36 100.0 36 .................................... AGAAAACAATCCTACCCCCTTAGTGAACATAAAGGG 3316 36 100.0 40 .................................... TTGACCATCCCTTTTTGCCACTATGTAGCTCAAAGATCAT 3240 36 100.0 40 .................................... GCAACTTGAGTCGCTACCAATATTACTGGTAATACAGAAT 3164 36 100.0 36 .................................... TTCATTACTTGGGACCAACCCTAGTTTAGAGGCATA 3092 36 100.0 38 .................................... CCTATAAGCAATTCCAACCCCTCTCTTCTTCCCTTCAA 3018 36 100.0 41 .................................... CCCCCGTTCCCCCGGGGAATAACCGTTTCAAGTAAATCCTT 2941 36 100.0 36 .................................... TATCAAAACACAACAGCTGGATTTTTATCTATTAGT 2869 36 100.0 40 .................................... AATTTAAAAGGTGTGAATTTAAGTGGGGTATTTTTCCCCA 2793 36 100.0 36 .................................... ATAAAGATGACAATATTTTCCTTGACATCCTCCCAA 2721 36 100.0 37 .................................... TTTAAATGCACCCACTTATCATTGAATGAAGTCTCTT 2648 36 100.0 39 .................................... TCCACCTCGCTTCTATCCTCTTAAAATGAACCCCACTAA 2573 36 100.0 39 .................................... ATGAAATTCTATCTTGGAACAAAGAATGGCTACAGTTTT 2498 36 100.0 36 .................................... GACCTTTCTAAGAGAGGTACAGAGAATACAGGAGAA 2426 36 100.0 39 .................................... ATTCATGGTACTTTTTGTTTCTGGACAGCAGAAAAATAT 2351 36 100.0 38 .................................... AGCTAAACGATAATCTATTCCTGGGCTAGATTCTACCA 2277 36 100.0 36 .................................... CTAACGCTGGTGTCTACAAGGAATACAAACTTTACG 2205 36 100.0 53 .................................... AAACCAAAAGGTAAACAAAGAGGTCGATAATTTAAGGAGGGAGGCAAAAAAAG 2116 36 94.4 41 TA.................................. CTCCTGTTAAATTGCATTTTTCCCAATGCTTTGTCAGATTA 2039 36 100.0 36 .................................... TATTTGAGTGGTAGTTTATATTATGAATGTAGGCAA 1967 36 100.0 42 .................................... TGCGCAAATTAGCATTGCTCAAATTAGCATTGCTCAAATCAG 1889 36 100.0 36 .................................... GGGATTATGTAACTCTCTCAGTTTTTCCGGAAGTGT 1817 36 100.0 39 .................................... GTGCGATCGCCTGGCGGATCACGTCCTGATCCTCATCAA 1742 36 100.0 35 .................................... CTAATAGCTGAGGTATAATCATTAATTGCATTATC 1671 36 100.0 39 .................................... GCTAAATTGTGAATTATCACGCTGGCATAATAAGCAGCT 1596 36 100.0 40 .................................... TTTATGGCATCCACAGTAACATTAAAGAGGACGAATCTAT 1520 36 100.0 39 .................................... CTAGATAATTTTAAGCCTTCAAAGAACTTAACTAGAGTA 1445 36 100.0 41 .................................... AAATGGTAGTCTAGAGTGAATATCTCCCATTCATCAAATGG 1368 36 100.0 39 .................................... TAGTGAAGCTCAGCATGTAAGAATAAACCCATACAAAGT 1293 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 57 36 99.9 38 GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Left flank : AAAAATCAAGACTGTGTTTTTTATCACCTTTCTAATTTATTATTAGAAACATGGAGAGAGTATAGTTATAACAACACATTTGGGATAGATTATTGAAAAATTTTGTAGTTAATGTAATAATAGAAAGAGAAATAAATATGACAATAAAAGCAGTGAATCACGAAAAAAAACCGAAGGTCAAAGAAAAAGGCTGGAACGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAAGCTGAAATGGGATTTTTTTTTCTGACCTTCGGAAAGAGGGTCTAGACAGTAGACAGAGTAAGGGTTTAAAATGGAGG # Right flank : TCAAAAGCTATCCATTTTGATGATCACTTAATGTTGGTCGTTGCAGGGCTATGGAACTTCTATTTGGATGCAGCATAAATTCAATCAGGATGGGGGAAGTTCTGTCGTCCAAAAAATATGCTTTTATTTCCCAACAGCTCTAGTATATGTTCTTGCCCACAAAATCCAAATCTTCACTAAAGAGTTTTCGACATTTTTCACATTTAAACGGAATTCGGTCGAGTGCCATGCTCTGAGCATCAGCGCCCCCTTGAGAATGAACCTGTCAGCATGAGGAGATTGCGACATTCGGTACAGGAAGCGTTCCATCGCATAGTACTGAAGTAGCTCGCTAAATGGCCGCTGTTCATCTTTCGCCCTGTTTAGAAGACGTTGACGGACAGAAGCAGAGATATTTTTGAGGTTTTTCGCACTCATACCAGTACCTCTAGGTAGGGTTTCATCGCTGCCTCAACCCGGCAGATTCTGGCATATTCAATAAGCTGCCGGGGGTTGAATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3665-2799 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYB01000025.1 Raphidiopsis brookii D9 D9_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 3664 36 100.0 41 .................................... TTGAGGTATATACAGTAGGACCAAAGATTGGTATATCTGTA 3587 36 100.0 40 .................................... CACTAACACTGAAATCCCAATCTGCCATTAAGACAGGGCT 3511 36 100.0 43 .................................... TTCTCGATTAACCTATCAGCATCTGCTTCAGTTAGGTTAACTG 3432 36 100.0 36 .................................... TGATCAAACGCATAATCCAGAAATTCTATTTCAAAA 3360 36 100.0 37 .................................... GTTGTGGTTGTTATGGTTATTTATTCATCGACACTAT 3287 36 100.0 35 .................................... ATTAAACTGTATTTCTACTTGAGTTAGGTTTTTCA 3216 36 100.0 48 .................................... CTAGTAAATCGTCGTCAATGAAATTTGAAGATGAATACTTTTCATCTT 3132 36 100.0 39 .................................... CCAAATAATAGTTGCGCGGGGCTACTTTTAAATGTAAGG 3057 36 100.0 40 .................................... TCGGCAAAACTTATTCTCAGTTCTAAATCTCTGTATTGTT 2981 36 100.0 39 .................................... CATCCAAGGGGATGAAACAGACAAGATCCACTCTGGGGC 2906 36 100.0 36 .................................... TTGGTAGCGAACGATGTAAGTTTTCATAGTTTATTT 2834 36 83.3 0 ....A.....A.T.................CA...T | ========== ====== ====== ====== ==================================== ================================================ ================== 12 36 98.6 40 GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : AAATACATATAAGAGGCTGGAATGGGATTTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAAACAGGGTAAGGGTTTAAAATGGTAT # Right flank : CCTTGATCAAGGTTTTTAAAAACCTGGAAAAATTAAGGATTATAAACATGCGATCGCGCTGGGAGTACTTCGCAAATGCGCTGGATTAACTGCCATGCGATCGCAACCGATGTTCCAAAACCACAAGTACAAAACTGACTTTTGTTTTGGAGGTTTTAAATAAATACTCCCATAATAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCTTAAAAAAGGGGGCTAATTGTTTTGTGTTTAGTTTATGAGAAGTTAGGGCTGCTTATATTATAATGGATGGGGTAAGTGGTGGGGAATTTATGAAGGGGGTAAAGGGCGATCGCGCAAGTGCGAGTGCTTTGCAAACGCGTGTAGCGAGTACTTCGCAAACGCGCTGGATTAACTGCCATGCAATCGGAATCCAACCCAAACTTAGGCGTTGCACCTGCACGGGTATAATAAGGAGAAGAATTGCCAAGATATGCCTAGATATTTTTATTTAGCTACGATCCCTATCCAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 24-1150 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYB01000009.1 Raphidiopsis brookii D9 D9_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 24 36 100.0 40 .................................... GATTTAATTTGTTTGATATTCAATTGAATCATATCGTGTT 100 36 100.0 47 .................................... GGAACCTTTATGGCCTCCAAGTAAGATTAAGTTGCCAATATTATTTA 183 36 100.0 38 .................................... CTTTTATTTCTTGAGCATATTTCTCATTAAGCATCCTT 257 36 100.0 39 .................................... TATGAAAAGTGGCATTGTTTCTCATGCCATCACCCTCCA 332 36 100.0 40 .................................... TTACATGGGGACTTATAGCTTCGTCACTAGCTTAGAAGCC 408 36 100.0 36 .................................... AACAGTTAAGTTAGTATCAGCTAATTTAACTCCTGT 480 36 100.0 35 .................................... CTTTCCATAACTTTCTCCTCAAATACAACAGTTTT 551 36 100.0 41 .................................... GCGGTAACTCACAAGTATACCAAAGTGTTTTCCTTAAAGGC 628 36 100.0 39 .................................... ATTTCTCTCCAATCTCTCCACTACCACGAATAGAGTTAA 703 36 100.0 41 .................................... AAATCGTTTGGATTCGGTGGTATTGCCAACTCTAGAATTTT 780 36 100.0 40 .................................... GTCAAAACCATCGAGCCACTCGAGTGGATCGAAAATTTCA 856 36 100.0 32 .................................... AGTTTTTCATACATTTCTTGTGGAGAGATGCT 924 36 100.0 35 .................................... GTATCTGTAACTGTAACCGTTAAGGGGCCCTCAAC 995 36 100.0 36 .................................... AAATACATGGATGATGACTTACTTGGTTTCATGAGT 1067 36 100.0 13 .................................... CAATCATTAACAT Deletion [1116] 1116 35 75.0 0 C..-...........AA..CCC........C....T | ========== ====== ====== ====== ==================================== =============================================== ================== 16 36 98.4 37 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : GGGTAAGGGATTAAAATGGAGGGG # Right flank : TAGGAGAAAAACAATGACGCAACTAATAGGTATCTCGGGACCACTCTTGACATTGAAGCAGAGGGAAAACATCGGTCCCTACGAAGTTATCATTGACTTCGAAGCAACGAACGACCCAGACACACTGGAGAAATTGAAGGAGTTGGGGATGAGTGGAGGTCGGGGCAGCTACGACATGAGTGACGGTATACTAGAGATAACAATCCCGACAACAAAATACGGTGATATGTTTTTTTATGCCGTCCTCGATGAGGACCGCCGTATTGGTTTTGTATCCTATGGGGTAACTATAGATATGGATACCAGGCGCTCGAAGGTAGATAGTCACCTCACTATTAGCACATCCGATCTCTGTCATGAGGGTGGCTATGGCGATCCCCAAACCATTACCTTTTCTTCTGTAGGCATGGATTTACGGACTGCTACTTACGAGGACATCTATGGTGAATACGAAGATGATCTAGCTTAAACCACTCTATCTGTCATACCGCTAAATTAAA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 5136-4662 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYB01000043.1 Raphidiopsis brookii D9 D9_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 5135 36 100.0 38 .................................... CAAAAAATCAATCTCGCGAGATTCAAAAAATCAATCTC 5061 36 100.0 36 .................................... ACGAATGGTTTGTTGTTCCTATTAGAGCTTCTGACA 4989 36 100.0 37 .................................... TCCAATGCTGATTCTTGTGCTGCTCCCTCTCTAAGCA 4916 36 100.0 38 .................................... ACGTAAAGTTTGTTCAACATACAGCAGTAATAGATGGC 4842 36 100.0 37 .................................... TTACCAGCAACAACAACGCTAGCAGCTTCGTCTATTA 4769 36 100.0 36 .................................... GTGGGGGATTTTGGGATAGATTTGACCAGTACCCAT 4697 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 99.6 37 GTGTTTAAACCTTTGATGCCATTAGGCGTTGAGCAC # Left flank : GTTGGAGAAAGGTATATAAGTTGTTGGAAGGATATGGTGACAGAGTGCAATACTCAATTTTTCGCTCTTGGTTAACGATGCGATCGCGGGAAAAACTAAGATGGGAATTGGAAAGAATACTAACGGATGAGGACAGTTTACTACTAATTCGTCTTTCTAATCAGTGCGTGAACGATATACGGAAGTATAATCGTCCTAATGCTTGGTTGTTACCAGATCAATGTTACAAAATTTTTTAATGCAAGCACTGTAGATTGTTAAGTTAAAAAGAGCGAAAGGAAAACCAGAAAGTCTTTGAGAGTATGGGGTTGAGCATTTTTGGGGTTAGGAGAGGTGCTTGCATTTAGTCTGAAAACCATTCATAGCAAGTGATTGAGGAAATTTATCGGGGATTGAAAATTCAGTTGGGAGGACAATTTGAGTGAATCTCTTGCATTTAAAATTTGATGCTTGTATAATTAGGAAAGAATACCTTTACAATAAGGGTTTCAGCCACCGCT # Right flank : ATAAAAAGTATTAAGATAGATAAAACTATGTTAACTCGTGAGAATTTTTTTGAGGCGGAAAGTTTTTTGCCGGGTGCTTAGTTTATCCTTTTCACTAAGATAAGGAAATATATATGGAGTATATACATGTCAAGACATTTGGAAAGACTACTGGAAATAGACTCAATGATTAGAGAGCGAACCAGATTTACAACCCAGCAGATGGCAGAAAGATTGGAGGTTAGTGACCGCACAATACGCAATGATTTGGCATTCTTGCGTGACCGATTCAATGCTCCCCTAGCGTTTTGTTCTGTTAAGGGACATCACTATACAGACTCGGAATGGCGATTGCCTAGTATTAATCTGTCTATGAGAGAACTGTCTGCGATAATGCTAGGAGCAAAAATGCTCGAATCTTATACTGGCAGTGCTTATGTGGACGATTTAGATTCCGCAATTTTGCGTTTAAGTGAAAGAATACCGGATAAAATCCGAATTAATAGAGAAGAAGTAGGAGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTAAACCTTTGATGCCATTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //