Array 1 1221799-1221035 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AP023393.1 Streptococcus dysgalactiae subsp. equisimilis strain 89 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1221798	    36	 100.0	    30	....................................	AGGCGATAGCATGTTACCAAAGTACGAGCA 	
   1221732	    36	 100.0	    30	....................................	TACGGCAATTACGCAAGAAATATGCGATTT 	
   1221666	    36	 100.0	    30	....................................	TCGACCTCTTATATGACATATTATAAAATT 	
   1221600	    36	 100.0	    30	....................................	AACTTGCTAAACTAAATCAAAGTCAACTTG 	
   1221534	    36	 100.0	    30	....................................	GCAACACGAACGGTAAAAGTACCTGTTTCA 	
   1221468	    36	 100.0	    30	....................................	GGGGTGGAGCGTCCTACGCTCCTCGGGTCT 	
   1221402	    36	 100.0	    31	....................................	CGTGGCGCTTAAATGCTCCTATGACACGCTC	
   1221335	    36	 100.0	    30	....................................	TGAGCATCAAGTCAGACAGAGTGCTATGTT 	
   1221269	    36	 100.0	    31	....................................	AATCAAGATTTTGCGACTTACGGCGTAAATG	
   1221202	    36	 100.0	    30	....................................	CCTTTAATTTAAAATGGCTTTGCCAGCAAA 	
   1221136	    36	 100.0	    30	....................................	GACAAAGCGAATTGCTGAGTTGACGGGAAA 	
   1221070	    36	  88.9	     0	....AC...........................TT.	|                              	
==========	======	======	======	====================================	===============================	==================
        12	    36	  99.1	    30	GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	                               	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTGTTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//


Array 2 1594288-1593852 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AP023393.1 Streptococcus dysgalactiae subsp. equisimilis strain 89 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	================================	======================================	==================
   1594287	    32	 100.0	    34	................................	TCTGGCTCTCTCATAGTCTCCATCACAGTCAAGA    	
   1594221	    32	 100.0	    36	................................	ATCTTGTGGCTTGCTAAAGTCAAGGAGCAATTCCTC  	
   1594153	    32	 100.0	    38	................................	GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA	
   1594083	    32	 100.0	    34	................................	AAATTGCAACCTAGCAAATTCTACTTTCTCGACC    	
   1594017	    32	 100.0	    36	................................	TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT  	
   1593949	    32	 100.0	    34	................................	GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT    	
   1593883	    32	  90.6	     0	............................C.TC	|                                     	
==========	======	======	======	================================	======================================	==================
         7	    32	  98.7	    36	GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT	                                      	       

# Left flank :   AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGCCCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT
# Right flank :  CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCAGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT

# Questionable array : NO	 Score: 9.20
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [9,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.50,-4.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.01,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//