Array 1 136-1751 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPG01000040.1 Vibrio cholerae strain A12JL5W63 NODE_51_length_27075_cov_50.178429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 136 28 100.0 33 ............................ TGATGTGCTGATGGCAGAGCGCGTGCGCGAAAT 197 28 100.0 33 ............................ GATTAATCAATCTAATTTCTGGAGATGAGGGAT 258 28 100.0 33 ............................ TCTTCGCATTTTCTTGAGCCGCTGTAAGACAGC 319 28 100.0 33 ............................ TAAACCCAAAGCTACTGTAGAGTGCCTTAAATG 380 28 100.0 33 ............................ CAAGAAGGGATCAAAGCCTTTCGTTTCTTCTGG 441 28 100.0 33 ............................ CAAAAACGATGCTGTAAATTGCGTGGAACCTGC 502 28 100.0 34 ............................ CGGGGGCTATTAAAAATGTCAGTAGCAAAGCCAA 564 28 100.0 33 ............................ CTTCACATTGTCGCTTTCCGTCCTTTAGCAGCT 625 28 100.0 33 ............................ TTTGCTAAATATATTGCTGGCGGAGTTGATAAG 686 28 100.0 33 ............................ CTAATCAATGTATCGAGTTTGGCCGAACTTATA 747 28 100.0 33 ............................ TCTCCAGTCCAATATCTTTGGCGTAGTCATGCT 808 28 100.0 33 ............................ CCAAGCCAAACCAACTGGACGACCTGCACAGGC 869 28 100.0 33 ............................ CGTAGTAAAGCTGAGAGCCGTGTTTGGCTTCCC 930 28 100.0 33 ............................ TAACAACGATCGCACTGTCAGCTTTAAGACTGG 991 28 100.0 33 ............................ TTTAACGGCCAGAACGTGCCTGAGTTAGCGATC 1052 28 100.0 33 ............................ TTCGGAGATTCAGAGAATGCCTATCGCAATCCC 1113 28 100.0 33 ............................ TGGAAGAGCGTGATCTGCACTACGCGGCGCAGT 1174 28 100.0 33 ............................ CCAGCTCACTGCCTGTTAGCTCATACACATAAC 1235 28 100.0 33 ............................ CCGCATCAGCCAAAGCGTAGACGTGGAGATTGA 1296 28 100.0 33 ............................ CAAGCTCATGTATGATAGCGGCCTTGGTTGCTG 1357 28 100.0 33 ............................ CCGGTGCTCAGCGCATCGGCTTGCTGGCAGGTT 1418 28 100.0 33 ............................ TTCAAAAAGCTTATCGGAGTAGTCAGACACAGT 1479 28 100.0 33 ............................ CCACTCTTATCCGAGAGTGATTCGAGCATTTCT 1540 28 100.0 33 ............................ CACGGTATTGAGTCAAGTAAGTTGATTGCAGTG 1601 28 100.0 33 ............................ TCCAAGCTTTGCGGATTGGCAAGCAAGTCATCA 1662 28 100.0 34 ............................ TCTTTAAAAGAAGGGAGCAGATCCTCGATCATTG 1724 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 27 28 100.0 33 GTCTTCCCCACACAGGTGGGGGTGTTTC # Left flank : GAATGTTCTTCTTTCGCGTTTACTCATATTGTCACCTGTTGGTTTTATGAGATGTATTTTAACACCTCTAATCAGGTGGCCAAATTCACTATGCCACTACACCTTGGAGACAGCAGAGCGGCACGGTATTTCGGTG # Right flank : CTTTGTGGGTGCAACGTCTGAGTACGCTTGGTTTGTCTTCCCCACGCAGGTTGGATTACAGAGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTATTACAGGGTTATTGGGTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTTAGGCACTTGGATAAACATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTTTTGGGTTGGGTGAAACAGGGCAGGCCTCATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATCGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCCAAACCAGAGGGGATTTGTGACAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1232-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPG01000015.1 Vibrio cholerae strain A12JL5W63 NODE_19_length_60735_cov_43.954704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1231 28 100.0 34 ............................ CAAGATCAAAGCGGGATTTTTAGCGCTTGGTTTT 1169 28 100.0 33 ............................ TCACTACGTAGCGCGTACCACAACAGACAAATG 1108 28 100.0 33 ............................ TCATCACAATTGGATCGAGTGATGTCACCGCAA 1047 28 100.0 33 ............................ CTCACACAATCCGCTCCCAAGTAGTTGGTGAAC 986 28 100.0 33 ............................ TCTGTTAATTGATTCTTCATATGCTTTACCTTC 925 28 100.0 33 ............................ TAAACCTTCGTTGGCTGCAAATCGGGTTCGCCT 864 28 100.0 33 ............................ CGCCATCGGTGATGCAAATGACGTTTATGTTCA 803 28 100.0 33 ............................ TAAGGGGTTTGTGACATGTAGTCGTAAGCGTAT 742 28 100.0 33 ............................ TTAGATTGAGCGTGGAATATACAGTGATCGTCA 681 28 100.0 33 ............................ TTGAAACCGCAGTTCGCCAGCACTTGGCAAGTG 620 28 100.0 33 ............................ CCAGCTCTTTTACCCTGACGGACGCGTGATAGG 559 28 100.0 33 ............................ TCATTGCCAATGGTTCGGACATCACTCGACTGA 498 28 100.0 33 ............................ CTTATGGATGATCTAGCCCGCTCTGGTGACTGT 437 28 100.0 33 ............................ CGCGTATGCGTTTTATCGACTACTCAAAAAACA 376 28 100.0 33 ............................ TGGTGATCATCGTTCTTCTTTTGAAGGCTCTGC 315 28 100.0 33 ............................ TTTGCGTCAAGTCTTGGCTAGCGAATTGACCAG 254 28 100.0 33 ............................ TCTTTTATGAGTTAACCAATACACACTCTTTTA 193 28 100.0 33 ............................ CTTTCTAGCGTTGGTAATTTCTTGCTCTAATAT 132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 100.0 33 GTCTTCCCCACACAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGCTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CCTTTGTAGTGGTCAACTAAAATTGGCCACGTTTTTAGCGTTTACCCAATACCGTCGCTCTGACTCATTGGGCGTTAGACCACCGTTATACCAATGTGGCCTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1232-784 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPG01000138.1 Vibrio cholerae strain A12JL5W63 NODE_208_length_1189_cov_20.400337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1231 28 100.0 32 ............................ TTGAGAAAGATACGGGCTTAAACCGCAAAACA 1171 28 100.0 32 ............................ TTTGATTGCGCTTTTTCGGTCATCTTCACCAA 1111 28 100.0 32 ............................ TTCAATTGTGCGTGGTCTGGTGAGTTATATTG 1051 28 100.0 32 ............................ CATAGGCTGAAAGACCTGTTATGGTTGCGGTT 991 28 100.0 32 ............................ TTTAATTTGAGGGCGCAAAGTCACAATGTGCT 931 28 100.0 32 ............................ TCGCCGACCGGAAGTTAAGAAAGCCTCAAGCG 871 28 100.0 32 ............................ GTTGTAGTTGCCGTGTCTTATTTCATGGCTTT 811 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAATTTCAT # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTGCAGTTGTCGTGTTTGAGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCTTCTTGAAGCAAAATTCATCAAAGTCTGGGTTTAATTATTCTGAAGATTCAGCTTTTAGCGTTCAAGTTGCACAATTTAGCTTTTGAGTTTTGCCTGATGTTGATTTGGTAGAACGTATTGAAATTTCAGCAGTTTCAAAGCCGCCGTAAGCTAACAAACCTCGATGCTTCCAATTTGTTGGATGCTCCACACGGAAAGTTTGGTTTCACAAAGGCTGCATCATCGCTGAAAGTGTGCTTTCTTTGTCGCGGATTCTTAACCGTGGCCAACTTAGCCTTGACCGTTTTGAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGTGTTTGAGTGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //