Array 1 187102-185485 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXD01000005.1 Salmonella enterica strain BCW_6241 NODE_5_length_350459_cov_4.20208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187101 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 187040 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 186978 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 186917 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 186856 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 186795 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 186734 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 186673 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 186612 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 186551 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 186490 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 186429 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 186368 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 186307 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 186246 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 186185 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 186124 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 186063 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 186002 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 185941 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 185880 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 185819 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 185758 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 185697 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 185636 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 185575 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 185514 29 93.1 0 A...........T................ | A [185487] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204380-203742 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXD01000005.1 Salmonella enterica strain BCW_6241 NODE_5_length_350459_cov_4.20208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204379 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 204318 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 204257 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 204196 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 204135 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 204074 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 204013 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 203952 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 203891 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 203830 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203769 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //