Array 1 63150-62282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBV010000047.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63149 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 63089 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 63029 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 62969 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62909 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62849 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62789 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62729 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62669 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62609 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62549 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62489 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62429 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62369 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62309 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGTATAGGCAGCTAAGAAAGCGAAGAAAAAGCCCGCCAGATAGGCCAGGA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38482-39886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBV010000056.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38482 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38542 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38602 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38662 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38722 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38782 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38842 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38902 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38962 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 39023 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 39083 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 39143 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 39203 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39263 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39323 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39383 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39439 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39499 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39559 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39619 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39679 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39739 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39799 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39859 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 409-1937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBV010000079.1 Pseudomonas aeruginosa strain 12866 12-866_S95_R1_001_(paired)_contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 409 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 469 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 529 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 589 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 649 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 709 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 769 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 829 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 889 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 949 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1009 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 1069 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 1129 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 1189 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 1249 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 1309 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 1370 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 1430 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 1490 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1550 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1610 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1670 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1730 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1790 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1850 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1910 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //