Array 1 218383-216548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXA01000005.1 Salmonella enterica subsp. enterica serovar Infantis strain CVM N38848 N38848_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218382 27 93.1 32 --........................... ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218323 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218262 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218200 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218139 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218078 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 218017 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217956 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217895 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217834 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217773 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217712 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217651 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217590 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217529 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217468 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217407 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217346 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217285 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217227 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217166 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217105 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217044 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 216983 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216922 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216861 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216800 29 100.0 11 ............................. CGGCCAGCCAT Deletion [216761] 216760 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 216699 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216638 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216577 29 93.1 0 A...........T................ | A [216550] ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17913-16297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXA01000055.1 Salmonella enterica subsp. enterica serovar Infantis strain CVM N38848 N38848_contig_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17912 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 17850 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 17789 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 17728 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 17667 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 17606 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 17545 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 17484 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 17423 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 17362 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 17301 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 17240 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 17179 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 17118 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 17057 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 16996 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 16935 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 16874 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 16812 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 16751 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 16690 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 16629 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 16568 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 16507 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 16446 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 16385 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 16324 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //