Array 1 296-2782 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKMA01000016.1 Thioalkalivibrio sp. ALE21 D893DRAFT_scaffold00016.16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 296 28 100.0 32 ............................ ATCCGCAACCGCGCTGTATTGCTTCACCTTGT 356 28 100.0 31 ............................ TTGGCACCGGGGCGCAGCCGGACACGGCGGG 415 28 100.0 32 ............................ AGCCTGCAAACGCGCTGGTGCAGTTCCGCGCT 475 28 100.0 32 ............................ ACCTGTTCAAGCCGATGGAGCCGAAGGACCTT 535 28 100.0 32 ............................ TGTGCGAGAAGGACAAGGAACAGGCGGATCGT 595 28 100.0 32 ............................ AAAACGGCGGCATCGTGCCGGTCGTGTCGGTC 655 28 100.0 32 ............................ GCGGACCCGCCGCGATCCTCGCCGCGCCCTAC 715 28 100.0 32 ............................ ACAGGACCGCGTGAGGCTTTTCAAGGTAAGGC 775 28 100.0 32 ............................ ACAAAGCCTGAGCCGACCGCCCGACACGCGCG 835 28 100.0 32 ............................ TGCGGGTGGACTGGTCCGAGTGCCACGAAGCG 895 28 100.0 32 ............................ TGATCTGTCCCGTTGAGCGCGCAGGCGGTTTT 955 28 100.0 32 ............................ AGTGGCCGGGCGCACAGGGGCGCAGACTCTAG 1015 28 100.0 32 ............................ TCCCCATCGAAGCGCGCGATCATCGTCTGCCG 1075 28 100.0 32 ............................ TATGCGGCGATCGGTCACGCTGACCAGGAGGA 1135 28 100.0 32 ............................ ATACCTCATCGCAAAAAAAAACGGGGGGCCAT 1195 28 100.0 32 ............................ TTTCGCTCCACAAAAGATTGTCACGATACGAC 1255 28 100.0 32 ............................ CGAATCAGCGTCCAAATACCTCCTCCTTTGCG 1315 28 100.0 32 ............................ ACGCTGCCGCCGTAGCTGTTGATGCGGACGGT 1375 28 100.0 32 ............................ AGAGCATGCCGCGGGGTGAAGCTGAAGCTGTT 1435 28 100.0 32 ............................ TCGATGTCGACGGAGAGGATCTTGCCGTGGCC 1495 28 100.0 32 ............................ AAAGCCCACCCTGACGCCTGCCGGGGTCCGAC 1555 28 100.0 32 ............................ AGCTGCGCAAGGCGGCCGACGTACTCGACACC 1615 28 100.0 32 ............................ TTGTCGTGGGCGGCGAGGGATTGGCGGTGCCT 1675 28 100.0 32 ............................ GCACGCACACATCGCGAGCGTCTAGCGAGCCG 1735 28 100.0 32 ............................ AGAGGGTGTTCACGCGCGGCCATCAGTTACCC 1795 28 100.0 32 ............................ AACCTGACGACACCGACCACCCGCATCTGGTG 1855 28 100.0 32 ............................ CTCCCGGCCGTCCGCGAAGCGCCCTACGGCAA 1915 28 100.0 32 ............................ GCCTCAAAATCCCGGGGCGGGTGTGCCGGATC 1975 28 100.0 32 ............................ TGATAGACGCCCTCTACCTGCGCGCCTGTGGC 2035 28 100.0 32 ............................ GCGATCTATATCGGTACTGCGCTGAGCTCGGA 2095 28 100.0 32 ............................ TTAGTCATTTTGCCACTCCATGGTCTCGGGCG 2155 28 100.0 32 ............................ TCGGCATGATCCCCGGCATCGTCGCAAGCTCG 2215 28 100.0 32 ............................ TGAAAACGCGCGGAGGTGTCGTAGTAACGCTC 2275 28 100.0 32 ............................ TCGGCCGTGATGCTCTCGCTGTCAAGGAATGC 2335 28 100.0 32 ............................ TCGCCCAGCGAGGGCGACAGCTACATCATCCC 2395 28 100.0 32 ............................ TCGCAGATGTGGAGCGGGCATGGAATGACGAG 2455 28 100.0 32 ............................ AGCGTCTCGGCTACATGGATCAACCGGGAGTG 2515 28 100.0 32 ............................ ACTCCTTCCACGCTCTCGACCCTGAGCACATC 2575 28 96.4 32 A........................... TGCACGTCCTGCCACGTCCCGACCGTCTGATC 2635 28 100.0 32 ............................ TCGACCAGACCGCCCCGGGCCCGGATCATCAG 2695 28 100.0 32 ............................ GTGACCGATCAGCTCAGCCGCCACATCCGACA 2755 28 92.9 0 ......................T..G.. | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.7 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : GACCACGGGATCGAGCATCGTCTGATCCGGCCGAAACGGCCGCAGACCAACGGAATGGTGGAGCGCTTCAACGGCCGCATCGCCGACTTGCTGCGGACCCGGCGCTTCGGCTCGGGAGAACATCTGAAGGACACCCTCCAGGACTACCAGCGCCTTTACAACCATCAGATCGGGCAGAAAGCGCTGGGGCATCGAACGCCGGTTGAGACACTCAAGGCCTGGCAACAGGAACGCCCCGATTTATTTCGTAAACATGTATACAAACAGCCGGGACCCGACACCTATCTTTCCCGTAG # Right flank : AGACACCAGGCGCAGGGGCTCGTAGCCGATTGCGTTCGTTTGGCTTTTTGATCTTTGACGGGGTGACCACTCGCCAGTGCTGACGTGATCTGAATGCATCATGCATCCAACAGGAGCGCTGTCGGACTGCCTGGCACTACACGCCGTTCCGGGCGAGCAGTTCCGGGATCTGGCGCTTGAAGCGGAAGAAGCCGTGGGTGGCATGTGGCCAGGCGAGATCGTCCCAGGTCCGGCGCAGCGGAATGACTTCGATCCCGTCTTCCGCCAGCTCGCGGGCGACGATATCGAGGGCCTCGGCCAGGGGGCCGACGGGCGCCTCGGGAGTGGCGATGGTGGTCACGCCCGCGGCGGCGCACTGCGCCCGGAGGGTCTCTGCGTGGAGTTGCGGGAGAAGGGTTGCGGGCTGCTGCAGGGTCTCGCCCGCGCGCCGTGCCGCATCCTCGGCCAGTGAATCGACCCAGTGGGCGGTGGTGGCACCAAAGGGCCAGGGGATGTCGGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6469-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKMA01000018.1 Thioalkalivibrio sp. ALE21 D893DRAFT_scaffold00018.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6468 28 100.0 32 ............................ TCCGGTGTCAGCGCCGCTTGGATCGCGTCAAT 6408 28 100.0 32 ............................ GACAACGCCACCCGCTTTCTCGATAGCCGTCA 6348 28 100.0 32 ............................ GCGCAGGGTCGCGGCGTTCTGCTGACACCAGA 6288 28 100.0 32 ............................ TCGCTTCTTGACGCCTGACAGGTCCGCGACAT 6228 28 100.0 32 ............................ ATCTGAAAATGCACCGTCGGCAGTACGATCGG 6168 28 100.0 32 ............................ ACCATCAACAGGGGAGTGGGCGGGGAACACCG 6108 28 100.0 32 ............................ AAGAATGAATCCGATCAGCCGGATTTGATGCC 6048 28 100.0 32 ............................ GCAGACTCCCCAGACGCCCGCACCGGCGACCA 5988 28 100.0 32 ............................ TCAAATAGTTCGGAGATCACGCCGCCTTTGGT 5928 28 100.0 32 ............................ ACTGGTCGAGGCAACGGCGGAGATCTCCGATT 5868 28 100.0 32 ............................ AACTCCAACTCCAACTCCAACTCCAACTCCAA 5808 28 100.0 32 ............................ TGATTCGCGCCTGCAATCCGCACAAGAAACTC 5748 28 100.0 32 ............................ AGCGACTCCGCACGGCGCAAGCGGAGTTCGGG 5688 28 100.0 32 ............................ ACATGGACAACGCGGGAGTGGTGGACATTGAG 5628 28 100.0 32 ............................ ATAGCGTGGTGAGTGCTTGCAAGGTATCCGCC 5568 28 100.0 32 ............................ AATTCGCCGAATCCGTCTACATCGGTGGGATC 5508 28 100.0 32 ............................ GACAGCCGCAGGGTCCGGCGCATCCCGTGCAT 5448 28 100.0 32 ............................ AGATCGAGATCCGGAAACTCCGCCACGACATC 5388 28 100.0 32 ............................ CCGAAGCCGGCCTTTGCGGCCACGGGGAAGTT 5328 28 100.0 32 ............................ TTTCTGAGGAGTCCCTACCGGCTGCCTCGCCC 5268 28 100.0 32 ............................ GTCGGGACCAACGGGATGTCGCGCCGAATTTC 5208 28 100.0 32 ............................ GTTCATCGGATAGCTGGGGAACACCGTCCAAA 5148 28 100.0 32 ............................ TGCAAGTGGAGGCGGCATACACCGCCGACACC 5088 28 100.0 33 ............................ CGGCCGGGAGCGGGGGGTGGATCAGGAGGTCTA 5027 28 100.0 32 ............................ TGATGCGCGTGGTGAACCGTCTGATGGACTTG 4967 28 100.0 33 ............................ CTTCCGATCGCCACGTTGTGAACGCTACCGTCG 4906 28 100.0 32 ............................ TACACGTTCCCGAACAGCGATCGCGCCCGGCA 4846 28 100.0 32 ............................ TGACCAAGGGCCAGCAGGTCGCGGTGCATGGC 4786 28 100.0 32 ............................ TAGTAGCTCGGTCAGCTTGCGCTCGGCTGCGG 4726 28 100.0 32 ............................ TTGGTGGTGGTGGGGGTGGTTACCCGCCGCGC 4666 28 100.0 32 ............................ GTTCGTACGTCGCCGTCTCCGCTTTTTTCGCC 4606 28 100.0 32 ............................ CTCCGATCCCCCGATCAGGTCCATCAGGGAGT 4546 28 100.0 32 ............................ AGCAGCGCCTCCCGCAACTCGTCAGCCTCCGC 4486 28 100.0 32 ............................ CGTCAATAGAAGCGCGCGCCTCGCCGGTATAG 4426 28 100.0 32 ............................ TCGCACGCCTCGCGCGTCAGATCCGGTACGTC 4366 28 100.0 32 ............................ AACGGGCATTACGTCCGGTGGGAGAATGGGGA 4306 28 100.0 32 ............................ GCGCAGATGAGCGAGACAGGGAAGATAAGTCC 4246 28 100.0 32 ............................ AATGACCGGCGGCACGCTGCTGGTGCTGGCCG 4186 28 100.0 31 ............................ CCCACGGCACCCGCCACACCAAACTTGACCC 4127 28 100.0 32 ............................ ACACGTCGACGCCAGCCGCCCACTGATAGGCC 4067 28 100.0 32 ............................ TGCTCGGGTTCGGGCTCGGCCGGGACGTACAG 4007 28 100.0 32 ............................ AGTAGTCCGTCGACTCCGGGTCACAGCAGCGA 3947 28 100.0 32 ............................ GTGGTGTGGATGGACGACTACGGAGACCGGCC 3887 28 100.0 32 ............................ TTACTGTCGGAGCAAACGAAGGGGGAGTGGCT 3827 28 100.0 32 ............................ TGCTCGAACCGGATCAGCACACCGGGGCCGTC 3767 28 100.0 32 ............................ ATGCGGTAATCTGCGCGGTGCGCTCGGAGTGC 3707 28 100.0 32 ............................ CGGTATCGTCGTGAATACGCATGCGGTCGATC 3647 28 100.0 32 ............................ CGGCGCTGGAGCAGGTGGCCACGATGGTCGGC 3587 28 100.0 32 ............................ ACATCCGCCCGACTGAGGACGCGTAGATGCAA 3527 28 100.0 32 ............................ TGGGCGGGGGCTACCCCCTGCCCAGCATCGCC 3467 28 100.0 32 ............................ TGGGGCCGGCTGCCGCCGCGCCCGCGCGAGAC 3407 28 100.0 32 ............................ AAGTCGGGCGCGCTGAAGGCGTACATGAGCAC 3347 28 100.0 32 ............................ ATAGGCTCAGGCGGTGGAGAATCCAACTCACC 3287 28 100.0 32 ............................ TCGCGGACAATCTCGCGGACCTGCTCCGCGTC 3227 28 100.0 32 ............................ TCGCGGACAATCTCGCGGACCTGCTCCGCGTC 3167 28 100.0 32 ............................ TCGCGGACAATCTCGCGGACCTGCTCCGCGTC 3107 28 100.0 32 ............................ TGGCCCTGCGCAAGCTGCGCGAGTTTTCCCCG 3047 28 100.0 32 ............................ CTTATTCGGCATGTCGGGGCATGGCGTCGAGC 2987 28 100.0 32 ............................ TTGATGAGGTCCGCGTGCTCGGTCTTGTCCAG 2927 28 100.0 32 ............................ TATGGCGGATGACGCGGAGAACGTGCGCCAGC 2867 28 100.0 32 ............................ TGTCTGCGTTGACGTTGGGCCTATTATACACA 2807 28 100.0 32 ............................ TTTTCATGATTGACGAAATCGGATTGATGCTA 2747 28 96.4 32 C........................... CGACTGATTCACCAGGTCCGCACTATCAAGGG 2687 28 100.0 32 ............................ CGCTCAAGGATAGCATCAGGAGGGCGCCCATC 2627 28 100.0 32 ............................ TCGATCTCCGGCTGCTCGCAGGGCTCCGTCAG 2567 28 100.0 32 ............................ GCCAACCGGCTGGACCTTCTGCGCCTGACCCC 2507 28 100.0 32 ............................ CACTGCCCTTGTTCCTGATGCGACATGATCGC 2447 28 100.0 32 ............................ TTTGGAACCCGCGCGCTGTACAGGTCCGGAAC 2387 28 100.0 32 ............................ AGCCGCTCGAAGTCGCTGTCCGTCAGCAGCTC 2327 28 100.0 32 ............................ GTCGCAATCAACGATCGGGTGGACAAGGTGGG 2267 28 100.0 32 ............................ GCTTACTTCGTCAATCTCTTCTTCGGTTGCCC 2207 28 100.0 32 ............................ GCTCGGTCTAGGTAACGCGCTGCTTTTGTCGG 2147 28 100.0 32 ............................ GTGGTGTAGCGGGGTGGCTTGTTGTTGCAGTC 2087 28 100.0 32 ............................ TGCTATGGACGTTTGTGATCGCTCCGCTATGG 2027 28 100.0 32 ............................ ACGGCAACAGCCACCCGTTCGATCGCCAGCCG 1967 28 100.0 32 ............................ CCTGAGCCCGCGCGGGATGACATGGAGTGGGC 1907 28 100.0 32 ............................ GTGGTGTAGCGGGTTGGCTTGTTGTTGCAGTC 1847 28 100.0 32 ............................ ACTGACACCGGCGAGCCGGGGCACACGAGCCC 1787 28 100.0 32 ............................ TGCAATGCAGGGCCAGATGCCTCATAAACGTC 1727 28 100.0 32 ............................ AAACCGCAGCCATTGAAGAAGATACCCTCGTC 1667 28 100.0 32 ............................ TCGACAAGATGCGGGCAATCGCCGCTGGGTCG 1607 28 100.0 32 ............................ TCGACGCGGAAGCCGGCGAGCTGGCGGATGGT 1547 28 100.0 32 ............................ TTCGTCTTGATTGCTTTCGGGCGGGCGCATCG 1487 28 100.0 32 ............................ AAGCTATCGGCCAAAGGCGCCGGAATGCGAGG 1427 28 100.0 32 ............................ TGCCGCCTGAAGCTGATCGGCAATATCCGACA 1367 28 100.0 32 ............................ ATGACAGAACTAGATAGCAACTGGACCGACTA 1307 28 100.0 32 ............................ GCCCCGTCATCTGGGCCCCACGACGTCGAGAA 1247 28 100.0 32 ............................ ATAACCTGGGACCGACATCAATACGGCCTACC 1187 28 100.0 32 ............................ TCGGAGACCAGGGGCATAGATGGCGAGAGGAG 1127 28 100.0 32 ............................ ATGACCCTCCGCAAACAAACGGGTTGGGCGTT 1067 28 100.0 32 ............................ TGGACCCCTGGGGTGTAGGGGCGGGTTAAGGC 1007 28 100.0 32 ............................ AGTGCGGCCCGGATCAGGGCTTCTAAGCGTGT 947 28 100.0 32 ............................ TGCCGCGACATTTCATGCAAGTCCTTGTTTTC 887 28 100.0 32 ............................ AGGAAGCGATGGATCGTGGACTACCTACCGAG 827 28 100.0 32 ............................ ATCGCCCGCGTTGAAGTCTATAGCGTGCGCGG 767 28 100.0 32 ............................ GATTGATTTGGTTGGGATTTTTGGCGGCGTGC 707 28 100.0 32 ............................ GTGGATCACATTCAGCGCGTCCGCCGCAATCT 647 28 100.0 32 ............................ TGATTGATATTGGTGAGGACTGGCACCCGTGA 587 28 100.0 32 ............................ CGAGTTCCCCGACCCGATCCACGGCCTGGTGA 527 28 100.0 32 ............................ ACCAGGCCGCGCGTGCGCCCCTCCGAGTCGGA 467 28 100.0 32 ............................ AAGCGGCTCGCTATGTGCTAGACCGCGCAGAT 407 28 100.0 32 ............................ GTAGCCGTCCACCAGCACTTTGCGCAGGACCC 347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 103 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : CACGCTTGGGAACCTTGATGGAAATCGGGTGGTTGCGGGGAATGCGGGACCACCTGGAGATCGGCGAGGTCCGGGCGGTTCCCCCCGGGGCTGCTCACCGCGTGGTTAGACGGCGACAGTACAAGACCAACGCCGATCGCCTCCGGCGGCGTCGTATGAAGCGTCACAACGAGAGCTACGAGGAGGCAGCCAGACACATCCCCGACAGCGTCGAGCGGAAGGTGAAGACCCCCTTCGTTATGGTGCGGAGCCAGAGTTCCGGGCAGGCCTTCAGTCTCTTCATCGAACACGGTGAATGCCAGCAGACACCGGTGACCGGAACCTTCAGCACGTACGGCCTGAGCCACGGGGCGACCATACCCTGGTTCTGACCCTTTTTCGAAAGCCTTTCAGAAAACCCTCTCGATCAGAGACTTATCTGGCATCTGGTCGAGAGGGTTCTGGATGGGTTTATGTGCCCTGTTCCCTAACAATCAGTAAGATGGAGTCGAGTAACTCTT # Right flank : AAATTTGTCTGCCCTTTCCCTATCTGTCAGGTCACGCCTGATTGCATACCGCGAGAGAAGGCACCCCTGTTTCATGCCCGGGAGTGGATGAGTATTGTGCCCGATGAGCGAACGGGAGGCTGACCGCATGGCGAGTACCATCCATTCCAACGCCCGCACCACACCCCGGATCCGGCAGGAACTGCAGGAGGCGCCGGCCGGCGTCAGCGACCCGGAACTGGCCCGGCGCTACGGCATCAGTCGCATGACGGTGCGCAAGTGGCGCCGCCGGCGCACCGAGGTGGAAGACCGGACCCATCGTCCGAAGACGATGCACACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //