Array 1 1145733-1144394 **** Predicted by CRISPRDetect 2.4 *** >NC_019977.1 Methanomethylovorans hollandica DSM 15978, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 1145732 37 100.0 37 ..................................... ATGTATCGTTGTCATTTAATGGTAATAGACATATCAA 1145658 37 100.0 35 ..................................... ACTCGCTGAGGCTACAGGTATTACCAGAGCAAGCA 1145586 37 100.0 44 ..................................... ATTATAGTTGCAACCGTATTTTTGCGCTTACCCTCACCATCAAT 1145505 37 100.0 36 ..................................... ACAAGTAAAGTTGTTTTGGCGATGCTGGCATATTGG 1145432 37 100.0 35 ..................................... TTATCCATAGGCATTATAATACATGCGTTTGCCGG 1145360 37 100.0 37 ..................................... GCTTCGACGGCGGTCTTTATAGCCACCCAAACATCCT 1145286 37 100.0 39 ..................................... TCTCTTTCATCTGAGCAATCATGAGCATATATACTTCTT 1145210 37 100.0 34 ..................................... TTACCCTCGTGACACTGTTATTGTCACTAGATGA 1145139 37 100.0 41 ..................................... TTGACCCTGCGTCGTCCTTGGTTTCGATCTTTTATTTTCAC 1145061 37 100.0 36 ..................................... AAAAACTAACTCCTAGGATCTTCACGGCGATAACTA 1144988 37 100.0 36 ..................................... CTGTCCACTGTGCCTATACCTACCCTGCCGTATGCA 1144915 37 100.0 41 ..................................... CTTTGTTGCTCAACTTGGGGTTAACGGGCATGAGCCGTCTC 1144837 37 100.0 37 ..................................... AACCTTCCGCCCGATTTTTAAAAATTCCCTAGTCTGG 1144763 37 100.0 43 ..................................... TTCGCTATCTTCCTTTTCTCCATAATATTTTACAGCCCTAGCA 1144683 37 100.0 42 ..................................... TTACGAGACGGTTATTGGAGATATCCGAATCCGAGTCTTCTG 1144604 37 100.0 66 ..................................... TTGCTTTCACCAAAACAAAAATAAAATCATTACAAGTTTGCATAAAACCAGTCACTTTGCCGATAA 1144501 37 100.0 34 ..................................... ACTTTTTCTTGCAAAAAGCAAGTTTGCTCTTGTA 1144430 36 83.8 0 .A....A.....A...........A....G..-.... | G [1144426] ========== ====== ====== ====== ===================================== ================================================================== ================== 18 37 99.1 40 CTTTCAGAGCATGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAGTAAGGGAAAGTATTTTCAGATCCATGCTATTTTCCTGAAGATCCGATCTTCACGTAGCCATCCTTCAAGTTACCGATCGTCAGATCGATCTTATTAGAACTGTTTATCTCTGAAACGGAAAGACACAAAGGTCTTACACTTTTATTGCACATGCACAGTCTGCCCCCACTCGACACAATTTTCAAATTTATCTTACAATACTTCTCTTATAACAAGCATAAATATTTTGCTGTCTTCCCAACCACTCTTGCTATTTCATACATCCCTTTCATGATTGTAAATGAACTGCTGCACACTAAGTGTCTAAAGAATTTATTAATACTGTACATACATATGCAGTCAAAAAAAATTAATTCGATATGCAGCAATTCTTAACCAAAATTTTAATATAGGCTTGAGTTTATAAACTCATCTATAAAAAACCAACAAGAAATTTGCCCTCTGAAAAGGAGTCTTTTCCTGGATTTCCAGCCCAAACAAAGGGAAAAATTCCCCT # Right flank : TGTACAAATTGTACATTTAAAATGGGTAATAAGAACAAATGTTCCTCTATTTCTCTTTACATCCATTAAAGAATGCTTAAATATAAGCAAAACATGCAATTATTAATCCTGATCATGAATGGATCTGATATAAAGCTGATGCTTACAGGTTTCCTGTGATTGACCTGCAGGACAGGAGATCAGGCATGAAAGCAGAACGCATAGTGATGGCAGGATAATTGCATGGAAGTTTTGAGGTTGCCGTAATGTTCGAAATAGAGTTTGTCAGATTGCAAAACGGTAAGTTCCAGTTAGTTGATCTTAATGTTCCCTGGAGGTCTGAGGTATCAGATGAGTATATCTATGACGGGAATGCGGTATTTCAGGAGGCTAACGGGATCATTGAAGTGCGCGGCCCTCAGCTTCTGCGTATCAGAAGGCTTCAGGTTTTCGACAACGAGATGATGTTACAGATAAAACAGGTAGTGCAGACAGCACATAGTAGGTTTGAGAGCCTGAAG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGAGCATGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 1149272-1149838 **** Predicted by CRISPRDetect 2.4 *** >NC_019977.1 Methanomethylovorans hollandica DSM 15978, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 1149272 37 100.0 38 ..................................... ATTGTGTCATTTCGACATGTATCATTTCTATGGGTTCT 1149347 37 100.0 37 ..................................... TCATAAAACTCCTGCGGCGTATCCAAATCCGACCCAA 1149421 37 100.0 35 ..................................... GTGATGCACTGGGGCTTTAAAAAATTCCGTAACCT 1149493 37 100.0 36 ..................................... GGTTCTTCTTGTAGCGCTATAATAAAATCTGTGAAC 1149566 37 100.0 34 ..................................... CATCAAACTCCTGGGAATTAATAACAACATTTTC 1149637 37 100.0 39 ..................................... AATTTCCAAGATGCATGGAAATTAAATCATCTATTACAC 1149713 37 100.0 52 ..................................... ATCCTAAACCAGGAATAAAAAGTTCTTCAAGCGAATTACCTTCCAACTTTGT 1149802 37 89.2 0 ................................T.TCT | ========== ====== ====== ====== ===================================== ==================================================== ================== 8 37 98.7 39 ATTCGAGAGCAAGATCCACTATAACAAGGATTGAAAC # Left flank : AAATTAGTAGCAAGAATTCCAGTGCTGGAAAAGAAGGATTCCTAATCTTTCTTTAGTCCATCATAGGAAAAAATTGCCCTATTCGAGAGCAAGATCCACTATAACAAGGATTGAAACTTTGAGCTCCTTTGCTATCCTGCTGTACGTTTCATCATTCGAGAGCAAGATCCACTATAACAAGGATTGAAACAGAAAAAAATTTTCCTGCCCCATAATATGTATCCCTATTCTCAAACTCAAGGATAGCAAATCCTTGGGAATGAAAAAATTCTCTATTTCCCATAATAGTGCTCTGGTCAAAACTACTGTCCCGACCAGAACTCCAAGTAGGCATGTCATTAATTGCAACAGGGACACTTCCACTCATCCATATTTTTCCATACGGATGAATGACTTCAGAGAGACTCATCTCTCTAACGGCCGTTTCCCAAGAAACGGTCGCTCCCCCTTTAATACGAAGAAGGGAAAACTCTGTCTTACTCCCATAATCGTTTCTATAG # Right flank : TATTTAATCCCGATACTTTTGACGGAAGTATCATTAGCTGATCGATTTGAATCAGAATTGGGGGTTAGGCAAGTTATGGATAAGGTTGCACAGATACAGCTAGAGCTTTACCAAAAGGCGTTCAATGATCGCACAAAGCGGTTCAGGAAACTCAAAAAGTATCTTGTTATGGATGAGTTTCTCTATGCAGCATGGGAAAATGTCTGTAAGGGCACCAGATCTGCCGGTGTTGACTCTATTTCAGTGGCAGATATTAAAAAGACGGGTGTTGATGAATTCCTGCAATCGTTGAAAGAAGATATAAAGGAAAACAGATACGAGCCAGACAGGATATTAAAACATGAGATATTAAAGCCGAATGGAAAAGTCAGAAAGTTAGGGATCCTCACTGTAAAGGACAGGGTTGTCCAGTATAACATGAAACTGGTACTGGAACCGATATTTGAAGCGGACTTTGACAGTAGTTCTTTTGGTTTTAGGGCTAACAGGTCTGCACAGCT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTATAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //