Array 1 117967-110285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037989.1 Rathayibacter toxicus strain CS36 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 117966 29 96.6 32 ............................T AAGCTCATGCCTGGGGATTTGAGCGATACGGA 117905 29 96.6 32 ............................G CTTCTGGCCACTCACCCATGCGCCCGTAGCGA 117844 29 96.6 33 ............................T CTGGGCAAGCAGATCGATATTCGAGTCGGAAAC 117782 29 96.6 33 ............................A AATATCCTCACACAACGAGAGAACCCCCAGGCG 117720 29 96.6 32 ............................T AAGGTCTCCGGAGCGATAATTGCTCAGATGGT 117659 29 96.6 32 ............................T TCGTTTGCCGCGGTCGCCTCTCCATCTCATGA 117598 29 100.0 32 ............................. TACGGGAACGGATGCGTCTCCGGATGGGTTCT 117537 29 100.0 32 ............................. TTCGGCCCAGGAACGCCATCAACCCAAATCAC 117476 29 100.0 33 ............................. CATCGCATCCTCAACCTTCCGAGCCTTATCCAC 117414 29 96.6 32 ............................A TTGATGCGCCGATTAGTCTGGCTTCTCCGCCG 117353 29 100.0 32 ............................. CGGAACGCCAAACCGGCGACCCACACGAGGAC 117292 29 100.0 32 ............................. AACTGATAGACCTATCGCTCCACTACACCGAT 117231 29 96.6 33 ............................T ACGCCGCCCTTCGCGGAGCACGTGATAGCGTCG 117169 29 96.6 32 ............................T CAATGACGACGACGCAGCAGCAAAACTCATCA 117108 29 100.0 32 ............................. CCGTCAGCAACTAAAGCATCCCTCGTCTCTCG 117047 29 96.6 33 ............................A CCGTCGACGACGAGTACGAGAAAATCCTTCAGG 116985 29 100.0 32 ............................. CTGACCCGTGATTCCGCTGGTCCTGCCGGTAT 116924 29 96.6 32 ............................G CTCGCATTATTCACGGTGAATACATCGTGAAT 116863 29 100.0 32 ............................. TGCACGCTCGCTCCTGTATATAAAGGCCAGGA 116802 29 96.6 32 ............................G CTCACCGAGCGGCTCGGGATAATGCCTCGCCG 116741 29 100.0 32 ............................. CGTAGATGCCCTGCTGTTAGATCCCCGGAACG 116680 29 100.0 32 ............................. TCAAACCCTAGTTATCGGCATAGTAAACATGC 116619 29 96.6 32 ............................T ATCATTACCGCGGTTATTACTTTAGTGATAAC 116558 29 96.6 33 ............................G ATACGGAGTGTCGACCACTTCGCCAGGAAATTT 116496 29 100.0 33 ............................. ACGAAAATGCCTACCTGTACGGATCTATATGGG 116434 29 96.6 32 ............................T CACGTTTCAGATTGCTATCGCCAACGCCGGTG 116373 29 96.6 32 ............................T AGCAGTCAAGACGTCGAGCGATATATCGAACT 116312 29 96.6 32 ............................G TAGTCTAAACCGCATAAAAGAATAAACCCCCT 116251 29 96.6 32 ............................T TCCACCGTCGAGCGGGGGGTAGTTTACGGCCC 116190 29 96.6 33 ............................T ACGCGACGCCGAAACGGGAATAGGGACACCCGG 116128 29 100.0 32 ............................. GGACCTACCGGACTTTCGGGGAACCTAGATGC 116067 29 100.0 32 ............................. CGCTTTCCAGCGCCTGTATATAAAGATATTTA 116006 29 100.0 33 ............................. GTCCGGCGGGAGTGGCGAGTTCGCTGCCGGATA 115944 29 96.6 32 ............................G CCTCACCCCACTCGCTGACAGCAGCCTCATCA 115883 29 96.6 32 ............................T ATAATTTGCGCGTGATAGCATGGCAGCAGACA 115822 29 100.0 32 ............................. GTCTTATTGCCGTCTTCGATACTGAGACGACT 115761 29 100.0 32 ............................. ATGGCCATCCAAACACGTCGCCCTACAGGTAT 115700 29 96.6 32 ............................G CAATATCATCAGCAGTCAGCAAAAGGCCCGAG 115639 29 96.6 32 ............................T GGTCAACCCATTTTCGGCGGGCCCATCAATGA 115578 29 96.6 34 ............................A CATCTACAAACCCGAGCAGAACCTGGGCACCCTG 115515 29 100.0 32 ............................. TTTTACCCGCTCACATATCAGACCGATCCGGC 115454 29 96.6 32 ............................T CACCTGCCCATTGGTGGCCCTCCAGCCCTCAT 115393 29 100.0 32 ............................. ACATGTCCTACTCATTGGGGGGTTCCGACTAT 115332 29 96.6 32 ............................G CAGAAGTAAATGCACCCCCCGCCTACTAGCCC 115271 29 96.6 34 ............................T GTTTCCTCACTGTATAGGGCGGAGTTGTGAGTGA 115208 29 100.0 32 ............................. CCTCGACGACGAGTACGAGAAAATCCTTCAGG 115147 29 96.6 33 ............................A TCAGAGTAATAGGCGCCCTCCCGATCGGATTAG 115085 29 100.0 34 ............................. GACGCTACGCTCATCCTCACCAGAAAGTTGATAG 115022 29 100.0 32 ............................. GCCAACTCTGGTAGTGGCGCTATGGGTGTCTT 114961 29 96.6 32 ............................T CGCGTTAATAGCGGCATTCGCGGAGTTAGCGA 114900 29 96.6 33 ............................A ACGTCTCGGCGATAAGGTCACGGAGAGTAATAA 114838 29 100.0 32 ............................. GCCGACTGGACCTCTATCCCCGATTCTTTTAT 114777 29 100.0 32 ............................. GCCCGCCGGAGTACAGACAGCACGCGTACGTC 114716 29 100.0 32 ............................. AGATTTGACCGCATTCATGAAGTCCGCCGCTT 114655 29 100.0 33 ............................. CTCATAATCGACCCCTCCGCGCCACCCCTGCGG 114593 29 96.6 32 ............................G ATGAGACAACCACCGCCATCGAGGATTTTTAC 114532 29 96.6 32 ............................G GATGGAAACTCGTCAACCGTTCCCACATAAGC 114471 29 100.0 32 ............................. TATCTAGCTCGGACATTCTCAAAAGCGACGAA 114410 29 96.6 32 ............................G CACTCTCGCCCTCGACGGGTGTGGGGGTTACT 114349 29 96.6 32 ............................T CGGTTTTTTAGGATCAGAAGGCTCCCACGTTT 114288 29 100.0 32 ............................. CGCTCCCAGGAGCTGGCTTTCCCAAAATTATA 114227 29 100.0 32 ............................. TCCGTAAGCATCAGAGATATTCTCGGCTATGC 114166 29 96.6 33 ............................A CCGCCATGCCGGGCGCCTGGAACGATTTCTGTC 114104 29 96.6 33 ............................A CAAAATAGTCGGAATAAAACTCCGAAAGAGAGG 114042 29 96.6 32 ............................T CTGGGACTATCTCAGCCGATTGCCCTCGCGGA 113981 29 96.6 32 ............................T GCCCTGCCCCCCACCCCAGCCAGGGAGCGAGA 113920 29 96.6 32 ............................A GATCAGCAGCAGCAGTGCGACCTAGCACGGTG 113859 29 100.0 32 ............................. CGCAAGCGCTTCCATCATCAGATCGACGACCT 113798 29 100.0 32 ............................. ATCTTCCACCATCACCCTAACCGCCACACCCG 113737 29 100.0 32 ............................. GGTTTCCAGTCCGATACCTCTTATCGGGAGAA 113676 29 100.0 33 ............................. GCGTCCGACAATATCGGGGTCAAAGTAGTCTAA 113614 29 96.6 33 ............................G TCCGGCACCACACATGCCTCCAAAAGGTAGCGA 113552 29 96.6 32 ............................T AAATTGATGAAAGAGGCTCTACCTGAGGGTAC 113491 29 96.6 32 ............................T CATGGCTACCTGGCTGGCTGGGGAGCGCGTCG 113430 29 96.6 32 ............................T CTGGTTGCCCGCCGGGGACCTGACCCTATCGA 113369 29 100.0 32 ............................. ATTTGTATGCCCATCTCGATGAGGCGCGGCAG 113308 29 96.6 32 ............................T CGCCACCGAGCTTAGACCCGACATTGCGGCCA 113247 29 100.0 32 ............................. GCCAGACAAAAAATTGTCAGTCATATTGACTC 113186 29 100.0 32 ............................. TCTTCGGCTTCTTTGAGAATACTTCCCATATC 113125 29 100.0 32 ............................. CTTGGCGGCAAGGCAGATAATCAAAAGGATCA 113064 29 96.6 32 ............................G CACAAGCGCCACACTAGGCCGCGTACTGGACC 113003 29 96.6 32 ............................T AAGGACCACAATAATGTCTAAATATAAAGTTT 112942 29 96.6 32 ............................T TGCTGAGGTTCACTAACGCGATCTCGATTTCT 112881 29 96.6 32 ............................G CCCGCTACAGCAAAAGCCCAGCACATCGCATC 112820 29 96.6 33 ............................G GGAGTTTTCGCCGACGAGCCTTAAGGAGCCTTC 112758 29 96.6 32 ............................T GTTTGACGATTCCTTCACCGCCAACAGCACGG 112697 29 100.0 32 ............................. GCGCCATTTCCAGGCTACCGGGGTAAGTCGTG 112636 29 96.6 32 ............................T CGACAGGGGTTTCACCCAGCGCGACCGCGGTT 112575 29 96.6 32 ............................T GGTTACGGGTGCCGTACCAACATGTGCTGTCG 112514 29 96.6 32 ............................G AATCGTTCACATACTGCTGCCAAGGGTCCAAA 112453 29 96.6 32 ............................G ACGCTCACGAAGAAAACCCTCAGGATTACTCT 112392 29 100.0 32 ............................. ATGCTCCCCCGCCTGATCGAGATGGGCATACA 112331 29 100.0 32 ............................. CAGCGTTTGGGTTAAAGTAACGGCGGTGATAA 112270 29 96.6 32 ............................T CGTATTCTTCTTCTTTGGTGGTCATATTGTTC 112209 29 96.6 32 ............................G AGCCTGAATTCTTAGTACTCTATCCTTCAAAA 112148 29 100.0 32 ............................. GCCGACGCGCAATGGGGCGAAGTGCATGATAT 112087 29 100.0 33 ............................. CGGCGGGACCTCTGGGGGGAATAATTAAAACTA 112025 29 96.6 32 ............................G TTTGCAGGCGCTGCCCAGTAATCGATCAGTGC 111964 29 96.6 32 ............................G CTAACATAGGTGTTTTCTTGGCGGAGTTGTGC 111903 29 96.6 32 ............................T AAACTGGTTATCGGGAAGGGAAGAAGATACTT 111842 29 96.6 32 ............................T AAGAGAAGGATTACTATCGGCAATCGCCTTAG 111781 29 96.6 32 ............................T TCACGCGGAGAATAATCTGGCTAACCGTCTCG 111720 29 96.6 32 ............................G TGGTGACCGCGGTCAGCTGCTTACTTGGGTGC 111659 29 96.6 32 ............................T CCATGAACCTTCACGGACCTCACCAGCAACAG 111598 29 96.6 33 ............................A CGGCAGCGACTATGGCGGCGATATTCACCTACA 111536 29 100.0 32 ............................. ATCAGAGACCGCCGGGTTATCGAAAGATTCAC 111475 29 96.6 32 ............................G AAATAAATCTCCACGTATCGGACTGATTTGAA 111414 29 96.6 33 ............................T GCTATTAACGCACAATCCAAGAAAACCCACTGC 111352 29 100.0 32 ............................. GATCATGTCGGGATTATATTTATCAAGTTCTG 111291 29 96.6 32 ............................T CTTTTCACAAGCGCGACATTTCTTCTGCATAC 111230 29 96.6 32 ............................T CTTTCGTGGTCGTTGCCGACGCCTCCGCTGAG 111169 29 100.0 32 ............................. AGTTTCGACCGCAGCGAAGTTGAGGAACTGGT 111108 29 96.6 32 ............................T GTCGCGCCGCCGACCTTTAAAAGTGCACCAAC 111047 29 96.6 32 ............................T GTCCACTAGTGTTTGGGGACGGCTTCAAAACA 110986 29 96.6 32 ............................G GTCCTCATGAATCGCGCGAGCGGTATTTATGC 110925 29 96.6 32 ............................T ATCTAGTCATCACACATCCAGACGGTGACAAG 110864 29 96.6 32 ............................T GAATAGGGTTGCTTTTTCGCCCACAGTGTCGT 110803 29 96.6 32 ............................G GGCCGTCGTCGCATGGCGAATCGTCCGGTGGT 110742 29 96.6 32 ............................A CCGTCGTTAAAGCGCCCTCAAACTGCGGGTCC 110681 29 100.0 32 ............................. AACCTCGTCGCGACAACCCGAGCCGTCAATCA 110620 29 96.6 34 ............................T CACCTCACCATCCGGATCCAACACACCCACATCA 110557 29 96.6 32 ............................A TCAAGGCCATGGCAGAATCTGTCATGTCTCAC 110496 29 96.6 32 .C........................... CTCGAAGGCTACGGGCCGTACAACGTTGGAGC 110435 29 93.1 32 .............G..............T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 110374 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 110313 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================== ================== 126 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAAGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CGGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCAGATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGACATCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCAGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //