Array 1 20207-22506 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000121.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 20207 32 100.0 35 ................................ GATATGGATTCGCACAAGACTTTTCGGCGATTCCA 20274 32 100.0 34 ................................ CGGAGTGACGCCATGGAAGCGTCGCATGCTGCCG 20340 32 100.0 34 ................................ TGGACCTGAAGGAATTTCACGCGAGCAATATTAT 20406 32 100.0 35 ................................ CGTGAATTGCGTAAAGTTGAGCGATTAGAGTCGGT 20473 32 100.0 33 ................................ ATATCAGTTGGAATTTTAATAGTGTCCATCATT 20538 32 100.0 35 ................................ AACGTGGCTTGAAATTGGGAAGAAATACCCATCGT 20605 32 100.0 36 ................................ CGGGCATGGAAGTTGAAGGTGTGATTGACTTAGCAA 20673 32 100.0 35 ................................ ATCGCCATGTCCATCGTTTTCATATCGTTAATCCC 20740 32 100.0 35 ................................ CGGCGGAGTCTGGCCGGGCTGCCGCCAAAGCTGGC 20807 32 100.0 35 ................................ ATCGTGTCGTCCTTGGCTACTTTCATCCTTTTAGG 20874 32 100.0 33 ................................ CTTTCGAAAGCCCGTAACCCACACATCGACGTA 20939 32 100.0 38 ................................ GGCACGGGTGAAATTGTACCGTCGAATGGGCCAATCGG 21009 32 100.0 34 ................................ CGCTAAAGTCATTCGAAGACCGGCGCGTGCTGAT 21075 32 100.0 35 ................................ TCGATAACTCCCGTTGTCCAATGTCGCGCTCCTCT 21142 32 100.0 35 ................................ AGAACGTATAAATCGCGGTCATGCTCACCAAGCTT 21209 32 100.0 34 ................................ TGGGTCCCGTCCTTGTTCGTGAGCACGAGCGTTA 21275 32 100.0 32 ................................ CGCGAACCGGACGATGTTGCGAAGATCCTCGA 21339 32 100.0 34 ................................ TTTATCGTCGAAGCTGACGTAACGGTTTGCGATG 21405 32 100.0 34 ................................ GTAATACCCTTTCACCTCATATCCTGTCCAGCTA 21471 32 100.0 35 ................................ GTTAGCGATGCGCTCCTGTGACGCCTTCACGATCT 21538 32 100.0 34 ................................ CGCAGAATGCTCCGGACTATGTTACGGAATTTAA 21604 32 100.0 36 ................................ AGACTATATCTTGCGGAAAACCCGCCCCTCTGTTTC 21672 32 100.0 36 ................................ GATTATTTCGGCGAGCACAAGACTGAGAATGCGGGC 21740 32 100.0 35 ................................ CGCCTCGACCGTGGCCCATCTTGCGAATGGATAGC 21807 32 100.0 36 ................................ GTACCCATTCGCGAGCAATGCCGTCATCACTCGCAA 21875 32 100.0 34 ................................ CGGAACCGATAAGCATCGACACGAAGTTACCGAG 21941 32 100.0 35 ................................ CGACTATGAGCTGTCTTTTTTATTGCCGATGACTA 22008 32 100.0 34 ................................ GTAATACCCTTTCACCTCATATCCTGTCCAGCTA 22074 32 100.0 33 ................................ CGCAATGTCAACTTTTACTGCGCCCACTAGACC 22139 32 100.0 34 ................................ AACGTCTGACAATCGTTGATATAACGGGCTTTTT 22205 32 100.0 35 ................................ TGTACCGGTGCTGCCGTAGGCCATCTGCCAGAAGC 22272 32 100.0 37 ................................ CCCGCCTCATCCGGTATCTCCGGCTTGTTGGCACTAA 22341 32 96.9 34 ........C....................... TACCACGTCTTTGAGCAGCACCGGATTCACCTTC 22407 32 96.9 35 ........C....................... AACGCTGAATTACCTGCGTCGGCACCAAAACGATA 22474 32 68.8 0 .C......C...TAAA..AGA.......G... | T [22486] ========== ====== ====== ====== ================================ ====================================== ================== 35 32 98.9 35 GTCGCATCTTACGCGGATGCGTGGATTGAAAT # Left flank : CGCCATTCATCTGGCTTACCGTTGAGTCGAATGGCAGCCCCCATGAGCCGTTCCTCGTCAGAGCCAGCGGCACTGACATATTGCCCGAACATAGCCCCGTGTCGCTAGGCCCCGGGCCAACAACCGGGGCTTCCCCTCGCGTTAGCAACACGCCCTCAAGGGACTTCCCGTGAACGCAACGGCCGTTACCTTATCATGCTGGCCCATGATATACTCATTGAAAGAACAAGTTGAGGGAGCCACAGAAGAGGGGAATATCCAGCCCCTTCGCCCTGGCGAGGAGAGCAGAGTTGTACAAATTGATGATAGGGTGTAACTGCTGGTGCGAATGTATAGTGCACATGAAATCCCCGGGACATTCGCACCACGATTATCACATTATTATCCAAATTAGCCGAAGAAGAGCTATAGATTTAATGTAATTTTGATTTTTATATTCATTTTCTGAATTATTCAATCATAATTGAATGTACATTTGACACATTCAGTCAATTTTCGCT # Right flank : TGCTTGTATGTGCCCTCGTTTTAACAGTGCAAGGGACACGTCAATTGGCGGGTGCGAAAACTGCTGAAAAGGACGTCAGACAGGAAAGCATGTTATCTGTTTTAACGTCAGTATACTTGCTTTCCAAGTCCCTCTATCTTATTTACATCAATTCAATATTATGGTAGTATCAAAATAAAGATGTCTTGGAAGGGTGATGATATGGAAGCGTCGTCGCTACAATATTCCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTTACACAAAGCCAACTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCCAAAATTGAAAATGATGAGGTAGAACGTCCTTCATTTGAAAAGGTTTATCCCATAGCTAACGCATTACATATACCTATTCGTGAAGTCATACAACCATATCTTGAAATAGGGCAAAAATCCGATGTTCTGTTCGGAATCTTACGAGAAGTAATCAAGGGAGATGGAGCGGATTTAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25775-27998 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000153.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25775 32 100.0 34 ................................ ATTGCGGTGTAGTGCGACCCCCAAGGCCGGTCGG 25841 32 100.0 35 ................................ ATCGACTGGAATCCGCAAGTCTTCGTAAACAACAT 25908 32 100.0 35 ................................ ATCGAATACCCCGCTTACTCTCGCCTACAAACGAT 25975 32 100.0 34 ................................ GCGATATTCAACGCTCAGCTCCGCTAGTTCATCG 26041 32 100.0 33 ................................ GTACCCTCCGCGCTTGAAGTTCGATCCCCATCG 26106 32 100.0 32 ................................ CGCCGCAACAGTCGTTCGCAGTTTGCGCACAA 26170 32 100.0 34 ................................ GGAAAAGCTCACGAGTAATGGAGATCGCATCCTC 26236 32 100.0 35 ................................ TTTAGAGGGGGCCGTAGGCCCCACATGTGTTACTT 26303 32 100.0 37 ................................ CAAAAAGGCGGCATAGAACCTTGCCTTCTCGGCATAG 26372 32 100.0 35 ................................ GTCTCGCACTCGACAAGCCTGCGCATGATATCGAG 26439 32 100.0 34 ................................ TGTGTAGATGAATTGCGCCGTGTCTCGGTCGAAC 26505 32 100.0 33 ................................ TGTTCAATCCATTTCGCAAGTCCTACGATTATT 26570 32 100.0 34 ................................ CAGGTCTGCGATGATGTCTTGATAATCGCGAAGC 26636 32 100.0 35 ................................ CGGATCCAGTCCAACGAAGAGACGAACGCGCAAAT 26703 32 100.0 34 ................................ AAACTCTAAACGGGAGGTGATGGGCCATGTCGAA 26769 32 100.0 36 ................................ GCGCAAGGTTGGACGAATTGATTGAGCGTGAGGAAG 26837 32 100.0 33 ................................ CACACGCCGATGAGCAAACGAAATTGATATTCC 26902 32 100.0 34 ................................ TCGTTGGTACGATGGTATCCGCGACCGGTCTACT 26968 32 100.0 34 ................................ TTCTTCCCGGAAAGCTACGGATATTACCGATTCG 27034 32 100.0 34 ................................ TTGATGCGTTGTGTCTGTTTCTCGCACCATTCGC 27100 32 100.0 35 ................................ GCGAAGTGCTTGGCGTTGATATTTCGGATATAATC 27167 32 100.0 36 ................................ GCCTTTTGCTGCTCAATTTTCGCGTTGACGTTATCG 27235 32 100.0 34 ................................ CGTGCGCGCGGCCAGGTCTTTAATATCGTCGCGT 27301 32 100.0 34 ................................ GTCAGCAGTGTGATACGCTCCATGAGGCCGGCTG 27367 32 100.0 34 ................................ ACAACCGGATGAAAAAATTACTGACCATCATCTC 27433 32 100.0 36 ................................ CGGGAGTGTCGATCGGCTGTCGCTCAACTGGAACCC 27501 32 100.0 36 ................................ TGGAGCTGCTAAGGGGAATGCAAAGCAGCACGAAGT 27569 32 100.0 37 ................................ CAACTCCATGGCAGCCGACATATCCGACGAATACAGC 27638 32 100.0 36 ................................ AAATCTTTTGTTGAGTCTAAGCAACCGACAATTAAT 27706 32 100.0 33 ................................ AGTTTGCGCGAGGGGAGGTGAAGAGGCATGTCG 27771 32 100.0 32 ................................ ATCGGGAGGTGACGAGATGGACGATAAAGAGC 27835 32 100.0 33 ................................ CTTGTGTGGATACCACCGATGAACATTCCCGCT 27900 32 100.0 35 ................................ GATCATCCCGCACGCCGCTTTATACACCAGTTTAG 27967 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 100.0 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : TGCAACATTTTTGCTTCCATGCTTTAACGTAGGGTCGCATTAGTGCCGGATAATTTTATGAAGGCTTTTGCTAACCATAGCAGGCATACGCCAGGATATCCGACCGAATGCACTCTTTCTCTTTATTGATATGAGATACTGCATGTTCTAACTGTCTGAAAAGTTACCCATCACGACGAGCGGCTGATCTGCTGCCTGATCGATTCTATCGGGAATTGCGTATAGCCAGGCTGCACAAAAGTATCTTCTTAGCACACTTGTCCGTGATATACTAAGAAGTATGGTGGCGAAGATGCCAAAGTTGGCCGAGACATTCGCACGGCCACTTCGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCAGATTTATTCAAATATTATCCAGTGAAGTTATTTTATTCTTGTTTATTGAAGCTAAACTGATTTATTTTCTTGAAGTTTTGAACCATGAAACGATAGTTTTGGTATAATTTGAGTCATTTTTCGCT # Right flank : TTTGCTCAATCCGCGCAACCACACCATGCTCGTCCCGTGATCCCTTGCTCTCTTCTTGAGTCAGTCAGGCCGATTAGTTGGAATACTCTGTTTGCCTGTGATATATTGGGCAAAGGAATGGTAAGGCAGCCAACTAGAGTGAAGAGGGGATGCCCAAACACGAAATAAGAACGACAGTGCATTAACGACAGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCAGATTTATTAAAATATTATCCAATAAAGTTAATTTATTCTGGTTTATTGAAGCTAAACTGATTTGTTTTCTCGAAGTTTTCAACCATCAAACGGCTTTTTTGGTGTGTTTTGTGTTATTTTTCGCTGTCGCATCCTACGCGGATGCGTGGATTGAAATGTAATCGAGATAATAAAACGGATCAATCACGACAAGTCGCATCCTACGCGGATGCGTGGATTGAAATCACAAGATGTAGTCGATCTGCACAAGTCGGTCGTGTCGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28359-30984 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000153.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28359 32 100.0 35 ................................ GTAATCGAGATAATAAAACGGATCAATCACGACAA 28426 32 100.0 34 ................................ CACAAGATGTAGTCGATCTGCACAAGTCGGTCGT 28492 32 100.0 35 ................................ CAATCCGGGCTTTTGTTTTTTGAAGGCAGGATGGA 28559 32 100.0 35 ................................ GCGCGTCGTTCGAGCGCGTGCCTCGCCAGATGATG 28626 32 100.0 36 ................................ GCTTGTTTTTACCGCAAGATTTACGGCGATTTAGCC 28694 32 100.0 34 ................................ CACAACGCCGTTTCCGCTCGCCCCCGGATCTTTA 28760 32 100.0 34 ................................ CTTCTATGATTACCTCCCCAAGCGCGAAAGCGTA 28826 32 100.0 34 ................................ GTCCCTTCTAACTGAATTACCTTACACTAATATT 28892 32 100.0 32 ................................ AGTATCTGGACAATGAAACCTTCTGCAAGAAG 28956 32 100.0 34 ................................ CGTCGCTCGCTCAATCGGATAACCTTCAACTCCC 29022 32 100.0 36 ................................ CGGCTGGGCTGGCCGCACGGATGAGCGACGATGCGC 29090 32 100.0 33 ................................ ATTTGAGGGGGAACATGTAAATGGTGGACAAAT 29155 32 100.0 36 ................................ CACGCTCATGATACCGTCGAGAGCGTGTTGCTGGGC 29223 32 100.0 34 ................................ GCCATCTATATCCGGTGATGACTGGGTACACGTT 29289 32 100.0 33 ................................ CATTTGGTCGAGAAGCGTTTCATTCCAACCCCC 29354 32 100.0 34 ................................ CATCGATTGTTTCCTCCATCCTATTTCAAGTAGT 29420 32 100.0 35 ................................ CGTACATCTATTACATCCTCCCCGCGTACGCCCGC 29487 32 100.0 36 ................................ AGCTGAGCCCGGCCACCGCCGAGAAGTACCGGGCGG 29555 32 100.0 35 ................................ GTGGTAAGCGTCACGGTTCCTACCGTCCGGATCTC 29622 32 100.0 35 ................................ AGCGTCGAGACGATCAACGCACAGCACGAATTTTA 29689 32 100.0 36 ................................ CGTGAGCCAGCTCCGGGAATACAATCGAGGCGTCCA 29757 32 100.0 35 ................................ GTCAGAACGGATACGTCGATTCACAAGCACTTTTC 29824 32 100.0 35 ................................ CTGCAAGGAGGAATCCGATCATGCAAGCAACCATC 29891 32 100.0 34 ................................ ATCAATGAGCATCTGCGCCCGGTGATAGATGAGT 29957 32 100.0 32 ................................ TAATCATCTCGTCAATAAACTGACGCCGAAGG 30021 32 100.0 34 ................................ CCCCAGCGCCGTAATGCCCCAACCAACAGGGCCA 30087 32 100.0 36 ................................ TTCAGCTCGGCAAAAAGATGGAGACCGCGCTTGGTA 30155 32 100.0 36 ................................ GGCTCCTTTTTCTCGTAGGTCGACTCGTCGAATAGG 30223 32 100.0 35 ................................ CCGTTTGCAACCTTGATCCCAACGCCCTCCTTTGC 30290 32 100.0 33 ................................ GGGAACCTGAAGGGCAAGGTCTGGAAAGGCAGC 30355 32 100.0 34 ................................ TTTCTGGACGGAATTTGCTCAATATCATATTTTA 30421 32 100.0 35 ................................ TTCTGGGCTCCGGCACGGGAAAATTAGCCAATGCC 30488 32 100.0 35 ................................ CGGCCCCAAATGGTATGGAAATAGAACCCTGCCCA 30555 32 100.0 34 ................................ TTGATCCCTCGGTATCGATAAATACCGGATTAGG 30621 32 100.0 34 ................................ ACCTGCTATGACAAACTGGTATGGGGCGATGTGC 30687 32 100.0 35 ................................ TCGTCCGCTGCCGGTCCCTCCGAATGTGGATGGAT 30754 32 100.0 34 ................................ TCTTTACGCCCAGCAAGGTACCGTTCCCGCTGCA 30820 32 100.0 35 ................................ CGCCTCAAGCCTATTTTCGATGTAGTATTCTCGCC 30887 32 100.0 34 ................................ ATCGTCGCGCTGAAGCTTGTCCAGTTCACGTTGC 30953 32 87.5 0 ...........................ATTC. | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.7 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATTGAAATCTTGTGTGGATACCACCGATGAACATTCCCGCTGTCGCATCCTATGTGGATGCGTGGATTGAAATGATCATCCCGCACGCCGCTTTATACACCAGTTTAGGTCGCATCCTATGTGGATGCGTGGATTGAAATTTGCTCAATCCGCGCAACCACACCATGCTCGTCCCGTGATCCCTTGCTCTCTTCTTGAGTCAGTCAGGCCGATTAGTTGGAATACTCTGTTTGCCTGTGATATATTGGGCAAAGGAATGGTAAGGCAGCCAACTAGAGTGAAGAGGGGATGCCCAAACACGAAATAAGAACGACAGTGCATTAACGACAGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCAGATTTATTAAAATATTATCCAATAAAGTTAATTTATTCTGGTTTATTGAAGCTAAACTGATTTGTTTTCTCGAAGTTTTCAACCATCAAACGGCTTTTTTGGTGTGTTTTGTGTTATTTTTCGCT # Right flank : TTTAAACGCTGTTGAAGCACCGTGAAGGGGAAAAATGTCACATTCTAAGTAAATCCCTGCTAAACTGACTTGACGATGTTTATTTCTAATCGCTTGGTACAAAATCGTTGTTTTGAAATGATATGGGTTTAAGGGATGAAGGGATGAAGCGGGAATCATGGGGATCTATGGCGAGAGCCGTAGAGCAAGAATCTTTCCAGTTCTCCTGCTTTTGTGATCGCTTTATTTCCTTGGTTCCTTATCCGTGCCTATAAGGAATATTTCTTATATCGCGTTGAATACCCTGTGCCCCAACCCATCCCCAGCGGGATGGGTTCGTTCGCTGCGGAACGACGACTTATCCGCAGCTATTTCCCAACCTTGAATTAGTTGATTTTTCGCATTTCTTGGATGCTTCCCTCCTCTCCCTCCATTGTGTGCGGAACTTGTCGAATCTCAACGTTTCACGTTATCGGTTCCTTCTCTCCCGACTATTTTTTAAGCCTTATGTTCCTTCACTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3486-667 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000199.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3485 32 100.0 36 ................................ TCTACGTCAACCCATTTACCGCCCATCTTTACGGAC 3417 32 100.0 34 ................................ ATTGAATGTGATTACCAAGCTTACCCCTTCCCTT 3351 32 100.0 34 ................................ GGCAGAACCCGGCTCAGAAGGAACTGCTTATCAT 3285 32 100.0 33 ................................ GGTCAATCCGTCAATCTGTGCTTGCTGTTCGGA 3220 32 100.0 34 ................................ TGACGTAAAATCCACGGCAAATTAGCCGCTTAAT 3154 32 100.0 35 ................................ ATCCGCACACCGCGCCAGTTCTTCGACCATTTGCG 3087 32 100.0 33 ................................ GCATCGGCCTGGGTTTGGCGCATGTTGCGCCGA 3022 32 100.0 35 ................................ GGCTTAAACTGGAGCTTGGAGCTTTACCAACAGGC 2955 32 100.0 35 ................................ TTCGGCAGGTCTGCATCTGGCAGGCCAGCGATCTT 2888 32 100.0 34 ................................ CCGTCCGGAAAAACGATGCTCCCCCCGACTTGTG 2822 32 100.0 33 ................................ GAGAAAGACGCCGGAACCGCAGCTCGGCTCTAA 2757 32 100.0 34 ................................ GCGTCTGCGAGGATCGCGGCGGAGCCATCAAAGG 2691 32 100.0 33 ................................ ACTTCTCGGGAGGGACGCCTGCAAGGCGTTATA 2626 32 100.0 35 ................................ CAAATACGAACGCAATCGTACACCTCCCGTCAATA 2559 32 100.0 34 ................................ CGGCGTTATAACCGGTTAGATCAACTTCAATTTT 2493 32 100.0 34 ................................ TCCGCCGAGTGGATCACGCAACAGGAACGCCGCA 2427 32 100.0 34 ................................ GAGTTAGTACTTGGTACTAATAAGTTGACGTATA 2361 32 100.0 34 ................................ TTTCCCGCGATAGGTAATATACCTAGACGGAATT 2295 32 100.0 34 ................................ CCGGCCCGTTTGCCGCCCTCGGCTACATTCAGCC 2229 32 100.0 38 ................................ ATGGCCTGCAGCTCAAGTATCCGGAGATAGTCATTAGC 2159 32 100.0 34 ................................ AAGACGATCACAGGGCTAGGGATGGCGGGCGGGG 2093 32 100.0 34 ................................ AGGCGGCTGTTACTGAGACGATGGGGCAATTACC 2027 32 100.0 33 ................................ GCTGCTGCTGTTTCCAGTGCTGCCGGAACCAAC 1962 32 100.0 33 ................................ CAACCATCGGATCCGGATAAGTGAAATCGAAGA 1897 32 100.0 36 ................................ TTGCCCCAATGAATCAGAATCGAAATGGATTTCCGG 1829 32 100.0 35 ................................ CGCGGCCGATGCATATTGACGGCAAGACATACGAA 1762 32 100.0 36 ................................ TGCCCGGTTTATCGAGGAACGCGAATTCGCTTTCGC 1694 32 100.0 35 ................................ CGCGTTGTCTCGATCCGACATAATGGACGACAAGG 1627 32 100.0 36 ................................ TCGCTCCGTTTGAACGACAAAAAGAACATACGCCAT 1559 32 100.0 34 ................................ AGCGCAACGAACGCCGCGGATATCCAGATCGCAA 1493 32 100.0 35 ................................ CCTTCCGTTTTTTACATGGTGGCGGCATCCATGTC 1426 32 100.0 35 ................................ CGCACGGCAACGTTCGTATTCGTTCGGCTGTCGTA 1359 32 100.0 34 ................................ CCGATAGCGTGAGACGGCCTCCAGCGCCTCCTGT 1293 32 100.0 35 ................................ CAAACAGGAAGAGAAGAACGAACAAAGCTATGAAA 1226 32 100.0 34 ................................ TTGGCATCCCAGAATAGAGCCTCCAGAATCTGCA 1160 32 100.0 34 ................................ TTTGTGTTGAACGAGAACTTGCGGATACGGATTC 1094 32 100.0 33 ................................ ACCCCAATCCACTGGTTTACTTACGATGACATC 1029 32 100.0 35 ................................ CCAGCAATAAGCGCGCGTTGATATACTAAACTCCC 962 32 100.0 32 ................................ ATACCCTCTGTTCCGCTCGGGCGTGGTCAGGG 898 32 100.0 34 ................................ TGCCGCATTCATGCTGTTCTTTATAGCAAAAAAG 832 32 100.0 35 ................................ GATTTCGACCACCTCACCTCAAGCCAATGCCAAAC 765 32 96.9 35 ............A................... CGGATCGATAACCACAGCTCGATCAATATTGTTTA 698 32 93.8 0 ..............A.....C........... | ========== ====== ====== ====== ================================ ====================================== ================== 43 32 99.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CAGGAAGCGATATGACGTATCGTGACGGTAATGAATCGAATGGTGTTCGTCGGATTCCGTTCCCATCGCTGCCCCTCCTTCCTGCCATCTTTTCCTTTATTATACCTGATTATAAGCGGTGGGGAACAGGTGGGAATCTGGTCGAGTCTATACTTTGATATCCATTCCACTGAAGTTTGACTTCCTGGGATTCATTTTTCGCTAACGCGAATTCAGCGTGAATCAGTCTGAAATTATCCATCACTTAGGTCCCCCTGTGGTATACTGAAAAAAGGAGTTTAGAACCTGTTTGAAATGGAGTAAAAATAAATGAAAAATCGGTGCGAATGTGAAGCGCACATAAAATCCCTGGGGGATTCGCACCAAAATTATTGCAATGTTATCCAATTCAGTTTGTAAAAGTTAATTAGTTTAAAGCTATTTCGAGCTAAATCTCTCATTTGCCTCGGAATTTTAGCGAAAAATTGATTTTATTGTTATATTTTGTGTAATTTTTCGCT # Right flank : TCCCGAAACCGGCCTACGGCCTTGCGGCATAGTCGAAAACGTTTCCGATGCGCCACAAAAGCAAATTTTCTATGACAAACCCAATTGTGATGAGGCTGTTCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATGTACAGTTAATATAGTGGCTGGAAGACGGCGGACGGAAAAGCGACGGAATATGGACGGGTTGAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAAATCCTGCATGAATGCAGGATTTTACGCTATTTGTGCCCGTATTTGATTAAATTCCTGTAAAAGTGCATTATTTTCGCCGATTTTTGCTTCCTATCTATGACAAAGCCCACTAGCGTTGCATCAATCTTTTTACGAAAATTTTCACCCTATAATTCTCTATATTTGTAACTTATTGAACTATATTCGTGGACAAAAATAAAGAAATCTCCTATTGTTGAGTTACCCTCAGCGTTATCCATAAAACGCCTCAACAAAGGAGATTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24830-23267 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000247.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000247, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24829 32 100.0 34 ................................ CGAAAGAAGATGAAGAAAACACTTGACACGTTAA 24763 32 100.0 35 ................................ TACGATCTGCAAGCCGGGAGGTAGCGTCAAGTCCT 24696 32 100.0 35 ................................ GATGGAGACGCCGACACTAGCTGCGATTGGCGCGA 24629 32 100.0 33 ................................ GAGAAAGACGCCGGAACCGCAGCTCGGCTCTAA 24564 32 100.0 36 ................................ GTGACAATACGGACAACGTTCGATCCGCGAAGGCTG 24496 32 100.0 35 ................................ CAATTCCGTCGAGGCGTCCATCGTCGCCAAGTTGT 24429 32 100.0 35 ................................ ACACGCCGCGACAAGACACCACGGCATTGGAGAGA 24362 32 100.0 34 ................................ CCCTTGAATGAATCCAGTCGCTCCAGGCTTTCGC 24296 32 100.0 34 ................................ AGCTCAGCGGCTGCGTCCGCTTGCGTGAGATCAC 24230 32 100.0 33 ................................ GTTCCCTCGTTGTTTTGCGAGGACGGATCGTCA 24165 32 100.0 36 ................................ CGAGCGCTTGGCCGCCGATGGCCGGGATACCATATT 24097 32 100.0 35 ................................ GTGTTCCCGTGCCGATCCTTGCGTATCGAGACGCC 24030 32 100.0 35 ................................ GGCCAATCCGCGAAAGACGGCGAAGGCGGATCGGA 23963 32 100.0 35 ................................ ATTGCGGTGCAGTGCGACCCCCAAGGCCGGTCGAA 23896 32 100.0 34 ................................ CGCTCGGAATGCATCGACATGTGGGAAGTTGAAG 23830 32 100.0 33 ................................ GAATACCCCATGCTCGAAAAATCCGAGATTGTC 23765 32 100.0 35 ................................ TCTTCAAGCTCCTGGATGACTCTCGATTGAGCCAG 23698 32 100.0 35 ................................ CCGTGTCAAGCGTTTAGTATTGCAGGACAGCGCAA 23631 32 100.0 34 ................................ CGCTTGTCATGCAGTTGTCTAATGTGCCCCACAT 23565 32 100.0 34 ................................ CGTCTTCTCCGATGACCGCCGCGATGAATCGAGC 23499 32 100.0 34 ................................ CACGGCGATCGTGCGGAAGCTCAAACCAGATTGT 23433 32 100.0 36 ................................ CTGAAGCGGATCCACGATGGTAACTGGAGATATCGG 23365 32 100.0 35 ................................ CTGTCCAGCTCCGGCAGTTCAAAACTCATCTGCTC 23298 32 90.6 0 ..................T....A...T.... | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.6 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GCAGTTGATGATGTCCGGACGTTGCCGCATCCGCTGTTCGCGAACAAAACTTATACGTTCAGGCCCCCGTCCACTTCCTCCAGAAACGAAAGTCGCCCCGGTCGTTTTGCCGATAGGTAGAAATTCATCGGGACAGACGGTATCCGGAAACCCGTGAATAGATAGGTGGAAGCGCTCCTTGAATTGGTTTTTGCTTGATGCCGTCTGTAAAGGATTTAGCCCAACACCTGTAGTATGATATACTCAGGATCAAGACAAAGATGCAATTGACAAAATCATATTTATTCCGGGAGATGCCCAAAAATCTCATTCCGTGGCAAGTGCGAATGTGAAGTGCACATAAAATCCCTGGGGGATTCGCACCAAATTTATTGAAAACTTATCCAGTTTAGTTATTAAAAGTTAGTTGTTTCGAGATTGTTTCTTGTTAAATATATCATTTCATTTAAAATAATGGTAATAAACTGATTATTTTATTATGTTTCATGTTATTTTTCGCT # Right flank : TGCTATGATTTTGAACGGCGGGATGTTTGGTCGCATCCAAATGCGATGAAGCGGAATGGGAACGATGCGCTGCCATTCCGGGCATGGCTGGCTGTTCGTTGGAATGAGAGGCGGCGGAATCAATTAACGCAATATGCCTGAGCGTATCGCAATTTTTGTCGCATCGTGCCAGGGGGCATGCCATAAGGAGTGCATTGCCATGTGCTGTTCCCTATGCGAACTCTCCCCTGCGTTCAGAAATGTGCTCGTTCTGAGCGGATGGGAGATTGCTCATAAGGAAGAGAAGGGAAATTGCTCATAAGGAAGAGAAGAGGGGAATATGGTCCAAGCACAGAGCGGATTGTTGTTAAAGCTAGAGGCAAAAAGCCCCGCCCAGACGACGGCGCATCGTGTCTTGAGCGAGGCGACAGATTTTACTCCAAGGGGGATACGATAAGCGTTGGTCCACCAAGAAAAGCTCACCTCACGCTCCCGGATTATTCCGAGGCGGGCAAGACGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32275-34853 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000080.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 32275 32 100.0 36 ................................ GATAGCGCTCAAGTCCGACCCTAGAAAGATGTATCC 32343 32 100.0 35 ................................ ACCGAAACTTGATGAAACTCATCGACCCGAAAGGG 32410 32 100.0 36 ................................ GTAGTCCAGTCGAGGAGGTGATTTTATTTACGGACA 32478 32 100.0 35 ................................ AATTCAGATATCCCCTTTCGGATTTTAATTAGGCA 32545 32 100.0 36 ................................ AATCGCTGTCAGCATATCGCCTAGCAAGTCATACAC 32613 32 100.0 36 ................................ GTTCGTGTCCTTGACTCGGTTCAGGGCCGTCGCCAG 32681 32 100.0 35 ................................ TTTGGGTACCGTGGCACCCGGTAAAGCTGCTGCTG 32748 32 100.0 34 ................................ ATTGCCCCTCGATAAGTGCAATACCCGCGTCTGT 32814 32 100.0 33 ................................ AATCCGTGCGGGCATATCGACATTGGCAACATA 32879 32 100.0 37 ................................ CCGCATCAGTGCCCCGGGTACTGTGTCCCGGTCTATC 32948 32 100.0 35 ................................ TGATTAGGGGTGATGATCATGAGGCTGGACCAATG 33015 32 100.0 34 ................................ ACACCCAACGATGAAACAGGCGCTTATTCCGGCT 33081 32 100.0 36 ................................ ACGATCGACGTATGCGCGAATGAACAAAATCACAAG 33149 32 100.0 36 ................................ ACGATCGACGTATGCGCGAATGAACAAAATCACAAG 33217 32 100.0 36 ................................ ACGATCGACGTATGCGCGAATGAACAAAATCACAAG 33285 32 100.0 34 ................................ AAACGGTGTGATTACTAGACTATATGGCAGTGGT 33351 32 100.0 34 ................................ ATTTTCTTTAATGGATTATTTATCGTATGTACGG 33417 32 100.0 38 ................................ CGCTGCGCGTTTTGTGGCAATCAATGAGCACATCGGTA 33487 32 100.0 35 ................................ TTCGAATTTCGTCACTTTGCTATATTGGTCGCCAT 33554 32 100.0 36 ................................ TTGTACATCAGGTACCCGCCGCCTATTGTCAGGAGC 33622 32 100.0 34 ................................ ATACAAAGCGACTATGCCAATTACCTCATGGGGG 33688 32 100.0 33 ................................ GCTACATAACCGCCCGTTTTGCGGATTGTCGGC 33753 32 100.0 33 ................................ ATTTTCTGGATTAGTTTATCTATCCTAGCCATG 33818 32 100.0 35 ................................ ATTACTCAATCACCCCCAATATGTCATCTGCTTTA 33885 32 100.0 35 ................................ CAAAGTACCCGATGAGGTGCGATAAACTGTCATTT 33952 32 100.0 34 ................................ ATGCATGCGCGCTACCAATAATACGACTACCACA 34018 32 100.0 37 ................................ CTACCTCCCGCCGGCTTATTTGAGAGGGGGCCGCAGC 34087 32 100.0 36 ................................ CCGTATAGGCTAACGTGTTTGGCTACGTAAAGGACA 34155 32 100.0 34 ................................ AATCCGTCCTATGACCGTATCGACCAGACCGAGC 34221 32 100.0 36 ................................ GCGAATAGACCGGATACGGATTTCGAGTGGATGACC 34289 32 100.0 33 ................................ TGGTGGTGGGCCATGGATTATGCCCAAGATGGT 34354 32 100.0 33 ................................ AATAAGGAATGTTATGCGATCACATACGGCGGC 34419 32 100.0 36 ................................ GTCTCACGCTGTTTCTCGGTGCATTTCCTCGAACTC 34487 32 100.0 34 ................................ GAGAATCCCTCCGTCTGGCCGCTCGCCAATTGCC 34553 32 100.0 37 ................................ AAGTCCATATTCCCGTTCGTAGCGTAGTTGCATTTGG 34622 32 100.0 33 ................................ CTTGTCGTAGGTTCCTAGTAGGATGGCTCCATG 34687 32 100.0 35 ................................ AAAGAAGAGCATGTCTTCGTTGATGAAGAGGACGC 34754 32 100.0 36 ................................ CGTGCGCCGACGCTGGATACCGCCATGCCCGACTGG 34822 32 87.5 0 ..........................A..GGA | ========== ====== ====== ====== ================================ ====================================== ================== 39 32 99.7 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CGGTCTGCATTCACGGCGACGGCGCGCATGCGCTGGCCTTTGCCCGCAGCCTGCGGGAGCGGTTGGAACAGGCGGGTATTGCGGTTCAGCCTGTGTAGTTGAGAGGGAACTGGATGGGGGAGTTGTGATGACCTCGTTCGAGCGGTTGGAAATGGTTCGGTAACATGTTGAGCAATGACCCTGTAAGATGCGCATTAATGCGCGAGTGATGAATTGTTGTATATACGGACTCGAAAGGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATAATAGATTTAACGATAGAGACCCCCAAGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATGAAATTACTATATTATAGGAAGAATCCATATTATGGTTTGTGGCAAAGGTGAGAAACGACCTACTTTAGATTGATTCTATAGCTAATTTGATTTATTTAATCATAACAAGAGCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : ACGAAGAAACTTACCAAAATAGTAAGCATTGTGGCATTCTACTCGCATTCGTGGACCTCTCCAAGCAGTTCAAGCGCACATTTGAGCGTCGCATCCTGCACGGGCACGTAGAAAACATATGAAACCTAAGAAGCATCTATCCCCCTTATCAAAAGATAATGCGGGGGCAGGATGCTTGTCTTTTTTTTGTGGAACACTTGTTCCCTGACAGGCCGTTGTCACTTTCTTCAACCATAATAGAATTTATAGTATCAGTACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAACTGCATCCAAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTCTCTGCATTGAAGCGGACTGCGCTGGCAAGCATCCCGATCATCGTTTATTTGATGTGGTTGCCCCAATGGAAGTGGATCCTATATGTTGATGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 46653-47077 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000080.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 46653 32 100.0 34 ................................ TATATCCGTAGGCATGAGAGAGGCAAAAAGGCAA 46719 32 100.0 33 ................................ TCCAGGAACTTCTTGATGCTTTCAACGTGGCTT 46784 32 100.0 33 ................................ TCATACTGTATCGTGCGCTTAACGACCGTGCAA 46849 32 100.0 33 ................................ TTCCTCGCTTGTCCATTCGGTCTCGTACGTGTA 46914 32 100.0 33 ................................ CATGCACGGATGAGCAGATTGAACGGAAATACG 46979 32 93.8 34 .............C...A.............. CCGTAACACGCCGAATGTCGAACGCACTTTTCCC A [46999] 47046 32 68.8 0 A...T...........T...T.CAC.CC.G.. | ========== ====== ====== ====== ================================ ================================== ================== 7 32 94.7 34 GTCGCATCCCACGTGGATGCGTGGATTGAAAT # Left flank : CTCTGGAAGTAGGTAGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAGTTCGCCAGCTTGAAGATCCAACTTGTCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGCGTGAAGGCATCGATCGATATGGAAGGGACCCTAATTTTCTAGTGCGAATGTGTAGTGCACATGAAATCCCCGGGGGATTCGCACCACATTTTTTTCATATTATGGATAAAAACCATTTTGTGATTTATTACAGAAGTGAGAAACCACCTAGTTTAGATTGATTCTATAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : TTCGAATAGATGAGCGGTATGCTAATCCTTGACCCACTGTGAGTATGCTATAATATTGGCAAGTTTATAGCCTAATGGAAGGAGTAAATGCAATGGAGCGTGTTCAGGCCTTCCGAAAATTAATTAGGCTTACAGGGGATAGAGCCAAACTGGATGCAAAAGCAAACGGGACTTACGTTGTGTATAAAACGGATAAAGGTCAAATCGTCAAAGAATATGTTAATGGTGAGATTATAACATTAAACGATCCAGGGTTGCCTCATGAGTGAACCTTCCGCAGTAATATATGTATTTGCCGGAAATAATGGCAGCGGTAAAAGTACAATTCGAGATTTGATTGTAGATATACTGGGATTTAGTATGAATATTGATCCTGACGCCTTGGCTCGTGGCATTGATCCGAATCAACCAGAGAGTCGTAAATTTTCAGCAGGTAAAAGAAGCGATCAAGATTGCTAGAGACTGTATACGCAATAAACGGGATTTTTCTATAGAAACGG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 48331-49294 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDIG01000080.1 Paenibacillus dendritiformis strain G25-126 G25-126_contig000080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 48331 32 100.0 35 ................................ TGTCGCCAGGAAGGGAATCCGGACGCGGGAAACGA 48398 32 100.0 34 ................................ AGTCGATGACAACAATCAGACAGCACATATGCCC 48464 32 100.0 35 ................................ ACGTGGACTTTTACGATCCGGGCCTGCCCATTGAA 48531 32 100.0 33 ................................ CTCTTTGGAAGATGTCGACATCTGCGTGGTTCC 48596 32 100.0 35 ................................ TCTGGCCGGGTATGACTGCTCCGCATCCAGCAAGT 48663 32 100.0 35 ................................ AAAATCTGCTATTTCCTGCAATTTCTTTCTGGACG 48730 32 100.0 35 ................................ AGTCATTTCAGGCTCAAGGGATAGTGACTGCAGCC 48797 32 100.0 34 ................................ CAAGATGTGCTTGTATGGTCGCCGGCTCCAGTGG 48863 32 100.0 36 ................................ CGTCAGGATATCGAGATAAATCCGCAGGCTCTCAAC 48931 32 100.0 35 ................................ ATGGCAGCCCGCCGGGAAGGGGCGAACAGCGTGAG 48998 32 100.0 35 ................................ ATTCTACGTAGTCCATGACGATAACATCCGGACGC 49065 32 100.0 34 ................................ TCGACCACTCATAGGTTCGCGAGCAGCCCATACT 49131 32 100.0 34 ................................ CCGTATCTGCATGGCACGGCGGGGACGGTGGAGG 49197 32 100.0 34 ................................ GGCAGGGTGGCCGCCGGGATGGATGATCGTTACG 49263 32 96.9 0 ..............................T. | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.8 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AATTGTTCTGGATGTAGAAGATGGATCAATAAAATACGAGGCCAAGCTAATACCACAGTGGGTCCAACAAATAAAGGATAGTCTTAAGTAATACTTTTAGGCGAAAAAAGAAACTTGCTCTCTTTTTCGGAATCTAGCATGAATAGACTAGGAAATATGTTTCGTGCTGCAATAATGCCCGTAACAATCATGAACTTAAGGTAGGTGTATGACAGAAATACACTCACCAGATAAGGTTTTCCTCCTGAAAAAATTGAAGTGACATATAGCGAAGAAGACTGGATTAACATGGGTGGGGCTGTTATCTGCAGGTGCGAATGTCTAGTGCACATAAAATCACTGGGGGATTCGTACCTTGTTTTTTCTATATTATGGGTAATATTCTTTTTATCGTTTGTTACTGACTTGGAAAAACCTCTTTTTAGAGGCTATGGTATGGATGTTTTGATTGATTCGGTCATATCAAGGGCCAAAATTGATTGTTACTATCATATTTCGCT # Right flank : TGGAATGTCGAAGGATACGTGTCTCCGAGCTGTGGTCGCATCCTTGAAATAAAGAAAGAGCCGAGACAGCATGTCAAACAGCAGTCGTATCCTACGGATGGTGGATTGGAATCGTAAAGTCACCGTGATGAACAATAAACCGGGCATGTCGTATCCTTCACGGATGCACAAAGTAAAAAACGGCCCCGCTTGCGATAAGATTTACTCGCAACCCCAGCGGGCCGCATCCCCTAATCCCATCCCACGGAACAGCCTCTCTTCCCTTCACACTTACACATCCCTCACTTTCTCTCTCCTCATACCTAGCCGCTCACCTCCCAACTCCATCCAGCCAAAAATACAATGGCAGCTTTCCCCGTACATGCACTTCTGGGCCATCGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAAGAGATACCGCTAGGCGCAAATCGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //