Array 1 31916-30252 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJHA01000120.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41565 SEEH1565_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31915 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 31854 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 31793 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 31732 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 31665 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 31604 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31543 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31482 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31421 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31360 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31299 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31238 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31177 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31116 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31055 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 30994 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30933 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30872 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30811 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30708 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30647 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30586 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30525 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30464 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30403 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30342 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30281 29 96.6 0 A............................ | A [30254] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49176-48172 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJHA01000120.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41565 SEEH1565_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49175 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49114 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49053 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 48992 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 48931 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 48870 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 48809 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 48748 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48687 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48626 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48565 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48504 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48443 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48382 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 48321 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 48260 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 48199 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTAACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //