Array 1 177091-177421 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAG01000003.1 Pectobacterium odoriferum strain Q3 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 177091 28 96.4 32 T........................... CTGCGCCCAATCAGGTGCACTGTTGTCCAATG TA,G [177094,177097] 177154 28 100.0 32 ............................ TGACAATTTGGTCAGCACTGCCAGCTAACGTA 177214 28 100.0 32 ............................ TCGCAGGGTGACCGCTGAATACAGAAAGTCGC 177274 28 100.0 32 ............................ GTGCGTAGCCTCCGGCCATGTAACTTGCTGGC 177334 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 177394 28 96.4 0 ...........G................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGTGTGCATAACGTCTTTAAAAAATACGTTGCTTCCTGTGCAGTCAATATGGCATGAATATTATCGTTATTTATTTCATTTAGTTGAGCATGTAATTTCTGATAATTAATATCTGCATGCTGTTTTTTAAAATCAAGATGATCTTCTAACCGATAGTCATCATCCACAAGCGTTTTTAAAACGGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAGTCAACGTGCTATTCCCCTATAAGGACACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCGACCCCACAATTTTTCATTCCCTCTAAAAGAAACTCATTACTTAAAAACGTTACGAAAGAAGGCCATCAATATTCGTTATTTAAGGGGGGTGAGCGCTGGCGCAGTACTACCTCGATAATAGCCAGACAACAGCGCTTAAGGTCGTGGATGAACTGCCTGTGCGGCAGTGAACCTGAATCGCTGGCATTGCGAGTTCTAATTAAC # Right flank : AAATCCGGTTGATACTCCAACTGTTGATGTTATGTTCACTGCCTATACGGCAGTGAACGGAGAGTTGGAGCGGTTGGCAGAACGCCTGCTTTTCTAAGCTGCCTATACGGCAGTGAACGTCAAGGACTATACCTACTTTTTCTCATTCTATTTCTAAGCTGCCTATACGGCAGTGAACTAATCACAGGCCGTGATTTTAATCTGAACGCCTTTCTAAGCTGCCTATACGGCAGTGAACTTTCCGTAGCATTTTTGATATTCACACGGTAATTTCTAAGCTGCCTATACGGCAGTGAACATCACTCATCCTGCGGCCAGCTCCTGAGATTCTTTCTAAGCTGCCTATACGGCAGTGAACGCTAATGCTCCGGCTTGAGTTATTCCAAGCGCTTTCTAAGCTGCCTATACGGCAGTGAACAATGGACCTATGGAGATTGGGCAGCGCATCTATTTCTAAGCTGCCTATACGGCAGCTTAGAAAGTTACATTTGAACTGTCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 177902-177451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAG01000003.1 Pectobacterium odoriferum strain Q3 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 177901 28 96.4 32 T........................... TAGATGCGCTGCCCAATCTCCATAGGTCCATT GA,T [177894,177897] 177838 28 100.0 32 ............................ GCGCTTGGAATAACTCAAGCCGGAGCATTAGC 177778 28 100.0 32 ............................ GAATCTCAGGAGCTGGCCGCAGGATGAGTGAT 177718 28 100.0 32 ............................ TTACCGTGTGAATATCAAAAATGCTACGGAAA 177658 28 100.0 32 ............................ GGCGTTCAGATTAAAATCACGGCCTGTGATTA 177598 28 100.0 32 ............................ TAGAATGAGAAAAAGTAGGTATAGTCCTTGAC 177538 28 100.0 32 ............................ AGCAGGCGTTCTGCCAACCGCTCCAACTCTCC 177478 28 82.1 0 ....................TGA.C.T. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGTAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACTCCACGAAATGCGTCGCGCCAGCGACGCATTCCTATAAGCACCGAGCTGCCTGTACGGCAGTGAACATTCCATCGCTCGTCTGGACTGTCGCGGCAAATTTCTAAGCTACCTATGCGGCAGTGAACAGTATCAGTCACTGAAAACCATCCGCTTGTACTTTCTAAGCTGCCTATGCGGCAGTGAACGGTATTCGTCAGTGAGCGCACCCACGCGGTCTTTTCTAAGCTGCCTATGCGGCAGTGAACCTAATGCCAATTGCACTTGAGCCTCAGACAGTTTTCTAAGCTGCCTATGCGGCAGTGAACGCGGCTCCATGCCACTGCCACCGCGACCATCATTTCTAAGCTGCCTATGCGGCAGTGAACATATATAGCAGATCGGACAGTTCAAATGTAAC # Right flank : ACATCAACAGTTGGAGTATCAACCGGATTTTTCTAAGCTGCCTATCCGGCAGTGAACCTATCCCGGTTTCGTGGATACACAAAAAAGTCTTTCTAAGCTGCCTATACGGCAGTGAACGCCAGCAAGTTACATGGCCGGAGGCTACGCACTTTCTAAGCTGCCTATACGGCAGTGAACGCGACTTTCTGTATTCAGCGGTCACCCTGCGATTTCTAAGCTGCCTATACGGCAGTGAACTACGTTAGCTGGCAGTGCTGACCAAATTGTCATTTCTAAGCTGCCTATACGGCAGTGAACCATTGGACAACAGTGCACCTGATTGGGCGCAGTTTCTAAGCTGCCTATACGGCAGCTTAGAAAGTTAATTAGAACTCGCAATGCCAGCGATTCAGGTTCACTGCCGCACAGGCAGTTCATCCACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCCTTAAATAACGAATATTGAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //