Array 1 90824-92845 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOJ01000002.1 Ligilactobacillus ruminis SPM0211 83_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 90824 30 100.0 35 .............................. TCGGTTTTTTCGTCCACAACGGGAGCCTAAAGCAC 90889 30 100.0 37 .............................. ATCCGTATTGAGCGTTGAACTCACGCTCGCTCTGATT 90956 30 100.0 36 .............................. TAGGCTTCATCTGCTCAATTTGAATATCCTTCCGCT 91022 30 100.0 35 .............................. TTGTTTTTCTCCTGTTTGATTTCTGGGCGATTCAT 91087 30 100.0 37 .............................. AAACGGATCTACCGTTTCAAAGGGAAGCATAAACATC 91154 30 100.0 36 .............................. TTTGGTGTGATAATGCACGGTCGGGGGATTGAACCC 91220 30 100.0 37 .............................. TAGCGTCGGCCATACCGGCACCCGCCAAGATACCCGA 91287 30 100.0 36 .............................. GCCGTTTTCGTGTAAATTCCTTGACCACCGGGGACG 91353 30 100.0 36 .............................. ACAAAACCGCTACAATCACAATAACCGCATATATTA 91419 30 100.0 37 .............................. TTTGATAAATAAGTCTGCCGCCATGATCGGGAACAAT 91486 30 100.0 35 .............................. GTGATTAATCGTGTCATCATAAATCATCACGCCGT 91551 30 100.0 37 .............................. TAATAAGCCTTACGAAAATATAAATCATCTTCCTGTG 91618 30 100.0 35 .............................. GTCAGAAACGGCGGGGCTTTTTGCTGTTTGTATTT 91683 30 100.0 38 .............................. TGCAGTCGAGCACCAGGGATGCAGTGCCCTGTACACTG 91751 30 100.0 35 .............................. AAAATTGGATTGCTCAAAAAGAATCCAACGGCTCA 91816 30 100.0 36 .............................. CTCCTTGTATGAACGGGACTCTGTGCTTGCTATGCA 91882 30 100.0 36 .............................. ATTGCCGACAATCTTAGCGAAGCAATCGATTATGTC 91948 30 100.0 36 .............................. TAAGAACGAAAAGAAAGACGACAATCGTGCTTCTAA 92014 30 100.0 37 .............................. ACTGTCGCCACTCTGCACTGTGTAGGTGCCGCTTGTT 92081 30 100.0 35 .............................. ATGTCAAAAATGCGCAGGGCGATATATCGAGTTTG 92146 30 100.0 37 .............................. TGCACTTTAGTTATGCTTGCGCTCAATCCGTCAATTG 92213 30 100.0 35 .............................. TTTCTTAACGGGCATCTCACCCGCGCGGTGGTTAA 92278 30 100.0 38 .............................. GGTGCTCGACTGCATGGCCTAGTTCGTGCAGTATGACA 92346 30 100.0 36 .............................. AGAATTAATTTGCCGTCATCGGTGCCTACGATTCCA 92412 30 100.0 35 .............................. TCGGTTGACTTGACGCCCCTTGACCTGAGCGGTAG 92477 30 100.0 39 .............................. AAGCGCGATGCGCAACCTCGTTTGCGGCAGGCGGTTCCT 92546 30 100.0 36 .............................. ACGGATGCAATTAACTATAATGGTCACTGGCTAGAC 92612 30 100.0 35 .............................. GCTACATAGGTAGACGTAAACTGGAAAATGCCTAC 92677 30 100.0 37 .............................. GACTGGCACCGGGCAAGAAAGAGTTGCTGCTGCTCGA 92744 30 100.0 38 .............................. GTGATTGTGGCTTTGAAGTCATGTGCTCTGATAACCAC 92812 30 96.7 0 ........................T..... | AT,C,C [92835,92838,92842] ========== ====== ====== ====== ============================== ======================================= ================== 31 30 99.9 36 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGCGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAGCTATGGA # Right flank : TGGTGACGATAAAAAAATAAAACAACGGAATCATATAAATTTAAATCGTTTTTAGCCTCATTCCCCAAACGCCCCCTCAAATCCTTCCCGACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGTTTGAAAGGGCTAAGATGGCCTGTTTCAACGCATCCGTTTCTTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACGCAGCCCAGTGCGAACCTGTTCGTTGTCGTCTCTGTATTTTTCATGCGAAAAAGATATTTGGAATATGATCGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCGATCAGGTTTCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCATTCCATCCAACTGATGAGCTCGTTTGCGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTGTAGATGTGGATCAGTTCTCCGAGCGAAATGTGTTGCGAAAGCTCAAGAAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 109088-108904 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOJ01000002.1 Ligilactobacillus ruminis SPM0211 83_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 109087 36 97.2 38 ................................A... AAGTACATAAAGTTGAAAGAAGGAAAAAAGAAATGAAG 109013 36 100.0 38 .................................... TATGAATCACTTATATTATAGCACAAATTCAGGAGGAA 108939 36 97.2 0 ...................A................ | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 98.1 38 GTTTTCGTCTCCTTAACTCGGAGATAGGTAATGATC # Left flank : CTCCTTTGTAATTATTTTCTAATTACCATAATGAGTGCGGCGTAGCCCCCAATCCCATATGAGCTTTGCAAAGCTGTTTTCAAGATATTCGCGTATGTCATCATCATATCCTGTCATGCGTGAGATGATGACAATATGCTCTCTGATGGTTTCATATGTCAACGAACTATTGGCATTGTGACTGTACCACAAGAAAAGACTTTGACGTATAGCCGTGTATTCAATCATAATCCACTGCATTTTGATAATCATGTGTTCAATAATCTTTTTAGTGGATGCTGCTTCAGGCGATATCAGGTCGGAAAACAGCTCGTTTGCCAGATAATTGCGAAAAACAATGTCATAATCTGTGAGCATTGAGCAAAATTGTTTCTGCGATGTTTGCAAGGTGCGGCTTATGGAATTATTGTCTGACTGTGAATAAATATTCGAGTATTTACAAGCCTCGGTCAGTACAGGCTGAAGAAAGGCTGTGTATAAACTCTCTTTACGATAATTTA # Right flank : CATCAAATATCAAAATGGCATCAGAATGGGGGGTACGTCCATAAGATAACGCCCAAAAAGCAGGCCAGAAACACCCAGCTTTTCAACCATTTTATAACCAAGCAATGACGGATAAAATAGGGAAAAAATACATAATCAATCTTTTCAATATCATTTGATTACCAATCTTTTAAAATAGTTAGATATGTTCTCAATTGCAAGTTTGCTTCAGTTAATCCTTTTTTGGTAATTCAGCTCACGCTTTTTCTCACAAAATTCTTGAATCAGTTCTTTTTACGCTTCACATGCAGTTTCAACTTTTCTTCTTTGCTCGCTTTTATGCTTTTCCGCCATTTTTTGAAACGGATTTTGTTCTTCTTCCATTGAAAATACCCTCTTTGCATCAAACTTGACGTCAGCGTCGAGACTGATTTTTTCAGTTTATTCTTTTTTGCGCTCATTGAGAATAACGATAACAAATTGCCAAAGAAAAGTTTGCATGTTCATTTTCATCGCACAAA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTAACTCGGAGATAGGTAATGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //