Array 1 128274-126537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLP01000035.1 Escherichia coli 1-182-04_S4_C1 e118204S4C1.contig.34_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128273 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 128212 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128151 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128090 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128029 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127968 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 127907 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 127846 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 127785 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 127724 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 127663 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127602 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127541 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127480 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127419 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127358 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 127297 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 127236 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127175 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127114 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127053 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 126992 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126931 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126870 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126809 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 126748 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 126687 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 126626 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126565 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155222-153973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLP01000035.1 Escherichia coli 1-182-04_S4_C1 e118204S4C1.contig.34_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155221 29 96.6 32 ....C........................ AGATCACACTTACCCTGCAAAATCTTAATGGG 155160 29 96.6 32 ....C........................ ACAATCACATATACGACGCGAGACGGAGATCG 155099 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 155038 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 154977 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 154916 29 96.6 32 ...........A................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 154855 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 154794 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 154733 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 154672 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 154611 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 154550 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 154489 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 154428 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 154367 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 154306 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154245 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154184 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154123 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 154062 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 154001 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //