Array 1 35407-35618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEY010000024.1 Escherichia coli strain O10:H52 / fimH612 / 2371 (ST Warwick) / clade III isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35407 29 100.0 32 ............................. GAGGCCGAAAAACATGAGCATCATGAACTCAA 35468 29 100.0 32 ............................. CTTTGCACAACGGCACCCTGAGTGGATTGTTA 35529 29 100.0 32 ............................. GGGCAGATCGCCCGCCGCGATACGCTGGCAGA 35590 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTAATTGCCCTTCAGCCGATTAGCCAGAAGGATGATGCCACGCGTTTGTGTATTGAAACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTGAAAATGAGTGGAACCTGTAAATAACTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTACTCCATTTTGCCCATCCTGGACTAATCATTACCATTCTCTACAAATGCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGTAGATTTTAGTTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAACAACATATCCAGGTAGTTCAAAATAACTCTCTACCCCCGAGAATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAACTGGCATTTGTATAATTACTTAAACTATTAAAACCTTCTACTATCTTGTTTCATTTTCAGCAATATATCCGGCTATTAATTAATTTTTCAGAATAAAACTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGGAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTAGTTTTGCATAACCCATTTTATGCACTATTGATAAATAGTTCTTATGGGTAAAGATATTCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTCCTTTATTCTAAGGATATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 237163-235992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEY010000001.1 Escherichia coli strain O10:H52 / fimH612 / 2371 (ST Warwick) / clade III isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 237162 28 100.0 32 ............................ GGCGCGGGAGTGCTTGATTTCGTATACGTCAT 237102 28 100.0 32 ............................ AACTTGTAACAGGAATGAATATTAATGCTCAC 237042 28 100.0 33 ............................ CCCAGAACCCGGCAAAAGTTGCGGGGGGCGTAT 236981 28 100.0 33 ............................ CGTCCGCCATTTTCGCCTGTCGCGCGGCAATGG 236920 28 100.0 32 ............................ GGCCCCTGGTCGGTTGGTTGATTACTACGTTT 236860 28 100.0 32 ............................ GCGTCGGCATGATAGACAAATTCATCACTCAA 236800 28 100.0 32 ............................ TAATTAAAATTCGAAAACTAATTCAGGAAATT 236740 28 100.0 32 ............................ TCGCGGAAAGCAAAGAACTGGTAGCGACAAAA 236680 28 100.0 32 ............................ GCTCGCGTAAATCGCTGCCAGCGGCAGAATGT 236620 28 100.0 32 ............................ AATCTGTATACACGAATGAGCAGTCCCCTGAG 236560 28 100.0 32 ............................ GGATGTTGAGTTCGTTCGTAACAACGCGGGTC 236500 28 100.0 32 ............................ AGTATCAAGATCGACAGGTTTTGCCTGAACCT 236440 28 100.0 32 ............................ ATCTGGCATGCATGGGATATAGCCCCGGATGT 236380 28 100.0 33 ............................ GAGCTGGTCGTCTTCAACATCTTCGCGCTTAAC 236319 28 100.0 32 ............................ TTTATCAACACCCAGGACCTCCTGAAAATGGT 236259 28 100.0 32 ............................ TGTTGAATTACATCCAGTAACTCAAAGCTTGA 236199 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 236139 28 96.4 33 .............T.............. AGAATGCTGGCACTTAATCCAACAGGAAATCTT 236078 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 236018 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGGGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCCA # Right flank : ATCCATAACCCCATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 247152-246342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEY010000001.1 Escherichia coli strain O10:H52 / fimH612 / 2371 (ST Warwick) / clade III isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247151 28 100.0 32 ............................ GCGATGGGCGTCCACGAACCACCTGGGCGCAC 247091 28 100.0 32 ............................ TGGCTGGGCGTCTGTATAAAGACAAATACGGC 247031 28 100.0 32 ............................ GGAGGGAACTACATGGCGCGCCTAACAACACT 246971 28 100.0 32 ............................ GAGCGCCCATATTGATGGGGATCAACACCTTT 246911 28 100.0 32 ............................ AAACGTATCGGCGCAGTAACGCTGGAATACCT 246851 28 100.0 32 ............................ AGGTCTGTAGCGTCCTTGTAATCTCTCGCTTT 246791 28 100.0 32 ............................ ATGATCAGCTGGCGCGGAAAGGATGCGGATAA 246731 28 100.0 32 ............................ ACCAAACTGTGCGGCAGCTTTGCGGGAGATGT 246671 28 100.0 32 ............................ ACCAGAATTAATAATTTTTTCATCATTACGCC 246611 28 100.0 32 ............................ GGATACGTTCATTTCGAAACGGTGAACGGCCT 246551 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 246491 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 246430 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 246370 28 85.7 0 ...........A........T...C..T | C [246346] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCGCGTGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGTTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTCTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTTCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //