Array 1 10651-9962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLJ01000018.1 Campylobacter fetus subsp. testudinum strain CFT12S00416-3 contig00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10650 30 100.0 35 .............................. AACTTTGCCAAATAAGCCTGTTGTGCCTGTAGATT 10585 30 100.0 35 .............................. AGAAAAACGTTAGTTTCACTTCCATTAGGCTGTTT 10520 30 100.0 37 .............................. TCGTTTAGTTTTACTACCTCTACACTAGCTTCTTTTT 10453 30 100.0 37 .............................. CCATAGTGGGAGATGACTTTGCGAAGCTATCTTTAAA 10386 30 100.0 35 .............................. ATTCTTAGATACTCTTGTAATTGGTGTTCGTTGCT 10321 30 100.0 36 .............................. TATTCCCATTTAGACATACTAGATCCACTTTGTATC 10255 30 100.0 36 .............................. TAAAAAAGCATAGCTAGGGCGTCTAGCTCATCCGGG 10189 30 100.0 36 .............................. AGAATTATACTTAATCACTCAGGACCTAAGTCTTGT 10123 30 100.0 35 .............................. TTGAATTTTCTAAAAATACCTTCCGGCCATTTTTG 10058 30 90.0 37 ......................A..A...T AGCTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 9991 30 73.3 0 ..........A....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.7 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TCAAATAATCAAATTTTAAATTTAGATAATTAAATTCAAAGTTCAAATAATCCAAATAATTCAAGTTCAAATAATTCAAATTTAAATTATTAAATTTAGATAATTCAAATCTAAATAATTCAAATCCAAATTTAAACTCAAAATTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTCAATAGTTTTCAATAGTTTTCAATAGTTTTCAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTAAAATTACTAAAAATACATCTGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 37-2380 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLJ01000001.1 Campylobacter fetus subsp. testudinum strain CFT12S00416-3 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 37 30 100.0 35 .............................. AAAGCTACTATGCTATAATAATAATGGTCTTTTTG 102 30 100.0 35 .............................. AGAAAAACGTTAGTTTCACTTCCATTAGGCTGTTT 167 30 100.0 37 .............................. TCGTTTAGTTTTACTACCTCTACACTAGCTTCTTTTT 234 30 100.0 35 .............................. TCACTCAGGCTTTCATCTATCATTTTAAATTTCCT 299 30 100.0 37 .............................. AGAGCTTATTTCTAAGATAGATATAATAAAGGCAAAA 366 30 100.0 36 .............................. ATGCAAGTGCTGTTGTTATCGCGCACAATGCGCTCT 432 30 100.0 37 .............................. AGCACTATACGTGCAAAGATAAATTTGGAGAGAGGTT 499 30 100.0 35 .............................. TTTTTGGATGATAGTTCTTTTCCACATACAGGGCA 564 30 100.0 36 .............................. TAGCTAACGCTAAATGGGCTAAGAGTTTTTATAAGT 630 30 100.0 37 .............................. AGCACTATACGTGCAAAGATAAATTTGGAGAGAGGTT 697 30 100.0 35 .............................. TTTTTGGATGATAGTTCTTTTCCACATACAGGGCA 762 30 100.0 36 .............................. TAGTTTTTTCTTTCTAGCTCATCATCCAGCCAAATT 828 30 100.0 36 .............................. AGGTGAAAATATTGCTTTTCGTGACTCCACTCGCAA 894 30 100.0 36 .............................. AATAAGTCGTTTTCTAATTCTGTTTTATTTGTTTCT 960 30 100.0 37 .............................. AAGCTTACTCCTAATCCGTTTTGACCGGAATGATATA 1027 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 1092 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 1157 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 1221 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 1286 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 1352 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 1418 30 96.7 36 ...............G.............. ACGTATCTTACTCTTTGGCAATCAGCAAATATAAAT 1484 30 100.0 36 .............................. CCATTTGTTATAAGGGTATATACAGTATCATCACTG 1550 30 100.0 38 .............................. TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 1618 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 1684 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 1750 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 1816 30 100.0 36 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 1882 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 1948 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 2015 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 2081 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 2147 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 2218 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 2283 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 2351 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 36 30 98.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTTTCAGATTTGGTGGTCTAGTTCCGTTTGAGTTTG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGCGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 3195-1848 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLJ01000027.1 Campylobacter fetus subsp. testudinum strain CFT12S00416-3 contig00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3194 30 100.0 37 .............................. TCGTTTAGTTTTACTACCTCTACACTAGCTTCTTTTT 3127 30 100.0 35 .............................. AATTGATAATCTTAAAATCTCAAAGCGGAGCCCAT 3062 30 100.0 35 .............................. TTTGGCGTGGCGGTCGTTGATGTGTTATTTTTTCT 2997 30 100.0 35 .............................. TTGCTAAGATTACCATTAACATTAGTATCAGCTTT 2932 30 100.0 36 .............................. TCTATCCATTCTATCCATTGTGGCGTTTGATAGTTT 2866 30 100.0 37 .............................. GAAAACTCGAAAAAGAAGACGCAGCCAAAATTATAAA 2799 30 100.0 36 .............................. ATATCTTGCATACTAGCGCACATCTGAAAATGCTGC 2733 30 100.0 37 .............................. TGCAAATAACTTTTTGGAGGTTAGCGTAGTAATAGAT 2666 30 100.0 36 .............................. TTGGGATAACTCCATATCCCCTATGTTGCTGGATAA 2600 30 100.0 35 .............................. TAAAGAAGCGTTTTGCAGGTACGCCCAGCATACCT 2535 30 100.0 35 .............................. CTTTGGGCTAAACAAACCCCAAAAAGAGCTGAGAA 2470 30 100.0 36 .............................. AGTTCTTTCTCTAAGCCTTTAATCTCTAAAACATTT 2404 30 100.0 36 .............................. ATGACAAGATAACCTTTTTTAGGAGATATAAAATAA 2338 30 100.0 35 .............................. GATCCAACACCAATTTTACGTTTCTGGTTTATCGA 2273 30 100.0 36 .............................. TACTCATATTTTTAAATTTAGACATTATCTGTTCTA 2207 30 100.0 36 .............................. TCTTTATTATACAGTCACCAAACATATCTTGAAAAT 2141 30 100.0 37 .............................. ACAGTATCCTTTGCTTGATAAATTTCATAAGTTCCCT 2074 30 100.0 36 .............................. CCGATATTTGCACCGCTATCTTTTAGCTCACTTATT 2008 30 100.0 35 .............................. GCAGTTACGCTTAGTGTAATAAACAAGCCTGCAGG 1943 30 96.7 36 .............................T AGCTCATCCCCAAATCTTTCAGACAATCCTCTTATT 1877 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AGAAAAACGTTAGTTTCACTTCCATTAGGCTGTT # Right flank : TTGTCGAACGCCTATTCTACCACTTCTAAATAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCAAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAAGGATAAACTATGAAAAGCTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCACTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTCTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAACTAGAAATCAACTATACCAAAGTTTCTATAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //