Array 1 278769-278191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027843.1 Leptospira santarosai strain U160 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 278768 29 100.0 32 ............................. TTACGAGTATGCTCGGATCAGGAGAAGATTCG 278707 29 100.0 32 ............................. TATTCAAGATCTTTGCCTATTGCAAGATGGTT 278646 29 100.0 32 ............................. CAACATTGAGGGATTGATTGAAGGGTGCAGAT 278585 29 100.0 32 ............................. AAATAACGAATTCATTAGGAATGGAAGGTGCA 278524 29 100.0 32 ............................. TTACGAGTATGCTCGGATCAGGAGAAGATTCG 278463 29 100.0 32 ............................. TATTCAAGATCTTTGCCTATTGCAAGATGGTT 278402 29 100.0 32 ............................. CAACATTGAGGGATTGATTGAAGGGTGCAGAT 278341 29 100.0 32 ............................. AGAGGCAACGTTGCTCTGCTTTCAAGGGAAAG 278280 29 96.6 32 ............................A GCGCCCGCTCCCGCAACCTTCAATACGAATCT 278219 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CTTTTCCCCACATGCGTGGGGTTGAACCGAGTTCTCCCTGATGCTGATCCACAAAGAATTTCTTTTCCCCACATGCGTGGGGTTGAACCGAAATAACGAATTCATTAGGAATGGAAGGTGCACTTTTCCCCACATGCGTGGGGTTGAACCGTTACGAGTATGCTCGGATCAGGAGAAGATTCGCTTTTCCCCACATGCGTGGGGTTGAACCGTATTCAAGATCTTTGCCTATTGCAAGATGGTTCTTTTCCCCACATGCGTGGGGTTGAACCGCAACATTGAGGGATTGATTGAAGGGTGCAGATCTTTTCCCCACATGCGTGGGGTTGAACCGAAATAACGAATTCATTAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGGGGTCATGCGTGGGGTTGAACCGAAATAACGAATTCATTAGGAATGGAAGGTGCA # Right flank : GCTGCATACATCAGAATGAACCGCTTCCCACCATACGTAGTCGCCCTAAAAAAGGTACAAAATGGAGAATAACGTAAAGGACGTGAGTTCGGCCTCAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACACTTTTATCAAAACTATCGGACGATAGGAACCGATTTCTTTTAAGGTTTTGAGACTCGCTCCAAGCATCATAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTACCATTCATCCAGTTATTACTATTATTACTCATCTCTATATAATAGGGTACCGCTCATTTGAGACCAATCTCCGTTTTGAAGCAGAATTTTGGACACCCGGTTATATAGTTCTGAGTATAACATGGACAACTCATCCGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGCTCTATTAGAGAAGTATAATTTTCATGAAGGCGACACCGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 279574-278935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027843.1 Leptospira santarosai strain U160 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 279573 29 100.0 32 ............................. GATTGGAATTTGTTTCTCGTCTGCAAGCAGTT 279512 29 100.0 32 ............................. AAATCGTTTCGGTAAATTAACCATTATTACTT 279451 29 100.0 32 ............................. ATACATTATGGGAAGTTGCGAATATGTCGCCT 279390 29 100.0 32 ............................. CAACATTGAGGGATTGATTGAAGGGTGCAGAT 279329 29 100.0 32 ............................. GACGTGCTCGTGATTCTCGGATTCATCGTATC 279268 29 100.0 32 ............................. AGTTCTCCCTGATGCTGATCCACAAAGAATTT 279207 29 100.0 32 ............................. AAATAACGAATTCATTAGGAATGGAAGGTGCA 279146 29 100.0 32 ............................. TTACGAGTATGCTCGGATCAGGAGAAGATTCG 279085 29 100.0 32 ............................. TATTCAAGATCTTTGCCTATTGCAAGATGGTT 279024 29 100.0 32 ............................. CAACATTGAGGGATTGATTGAAGGGTGCAGAT 278963 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAGCTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGACGCGATCATGTTGTTTTCGAGCAATTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAATAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACGTTCCTAATGAACCTTAGAGACAGATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : AAATAACGAATTCATTAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGGGGTCATGCGTGGGGTTGAACCGAAATAACGAATTCATTAGGAATGGAAGGTGCACTTTTCCCCACATGCGTGGGGTTGAACCGTTACGAGTATGCTCGGATCAGGAGAAGATTCGCTTTTCCCCACATGCGTGGGGTTGAACCGTATTCAAGATCTTTGCCTATTGCAAGATGGTTCTTTTCCCCACATGCGTGGGGTTGAACCGCAACATTGAGGGATTGATTGAAGGGTGCAGATCTTTTCCCCACATGCGTGGGGTTGAACCGAAATAACGAATTCATTAGGAATGGAAGGTGCACTTTTCCCCACATGCGTGGGGTTGAACCGTTACGAGTATGCTCGGATCAGGAGAAGATTCGCTTTTCCCCACATGCGTGGGGTTGAACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2628138-2626949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027843.1 Leptospira santarosai strain U160 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2628137 29 100.0 32 ............................. CGGGAACCGGTTCTTGTCCCGCCGCCGCGCCT 2628076 29 100.0 32 ............................. TTTTTGATTGGTCGAAGCGATGCGACGACTTG 2628015 29 100.0 32 ............................. TTGACGGCGGATTTCGTGCAGTTGGGCAAATC 2627954 29 100.0 32 ............................. CCAGATGAATCAATTCTCTCGAAAATTGATCC 2627893 29 100.0 32 ............................. AATTCCATCCTCCTTTCGATTGGCAATTTCCA 2627832 29 100.0 32 ............................. GACCAATTCCAAGATTTCGAGTTTACTCACAA 2627771 29 96.6 32 ............................T GGAAGATGCCGCGATTTTAATGGGAACTACGA 2627710 29 100.0 32 ............................. TTTTCCTGAATTTGAGAGGCGTGGGTAATGAT 2627649 29 100.0 32 ............................. GGAATCCCATTCGGGGCGGAAAACCTTTCGAA 2627588 29 100.0 32 ............................. TGAACAATAACTATTCGGTGGATGGTTCATCC 2627527 29 100.0 32 ............................. GGCACCCTCTATACGTCTAATTTTATCCCCGC 2627466 29 100.0 32 ............................. CAGGACAGAAATTAACTCCTCGAACAATTACC 2627405 29 100.0 32 ............................. AAAATGAAAAATGTATTTCGAATTTTGAATTT 2627344 29 100.0 32 ............................. ATCTAATTCGACGACTCGTAACAAACGAACTC 2627283 29 100.0 32 ............................. GCATTGTTTTCGTTTCGTTCTTCTTCGTTCGG 2627222 29 96.6 33 ............................C ACCGGAGGTTATGTCCGATATATGATTACAGCA 2627160 29 100.0 32 ............................. TTTTTGTGACTTTGTTCACGAATGTTTTTGCG 2627099 29 100.0 32 ............................. TCAACACCGGTAGCCATGACTCTTTTCGGCTC 2627038 29 93.1 32 .........G...A............... TTTTAGTTGTGCCCTGAATGTCGTTTGCATTT 2626977 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATTTTAAAAGCGATAAAAATACGAAGTTTCTTTGAATCCTAAAACGGAAAAACCTCATGACGGAATTTTTCTCAGAATCCTCGTCTCCACTCGCAATCCGGTCGCCCGCACAAGTTAAAAATTTATAGTTCCAAGCCTCAATATATTATAATTTTTTCTAATATTCAAATCACATGATTCCGAATATAGAATCATAGCTCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAACCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGCCCTATACAAATCTGGCCCTTCCGGTAATTTCATGGGTAAAGGTTCAAACCGCCATACGAACCTGGATTTGCAATAAAGTCAAA # Right flank : TTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTATATTTTGGAAAAACTTCACCCATTCAAAGATACATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTTGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATTTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 2875595-2875202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027843.1 Leptospira santarosai strain U160 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2875594 29 100.0 32 ............................. CGGTACTGTAAGCCTTGAGGCCAACAACATGT 2875533 29 96.6 30 ............................A AAAAATAGTCTCCGTCCTGTTGAATTTTGA 2875474 29 100.0 32 ............................. CTGCAGTCGACATTGCAGCAATCTCTAAATCA 2875413 29 100.0 32 ............................. CCCGCTGCGTAACGCTAGATGAAGAGTTACAA 2875352 29 96.6 32 ............................T ATAGAGTTTCCATTCCAAATGATAAACTTTTC 2875291 29 100.0 32 ............................. GCGCGAAGAACCGAAGGACTCGTATCTGCCGT 2875230 29 75.9 0 .....................CATTT.AT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TTCTATTTCATAAAGACAAAACCCACAAAGAGACGGAAAGAAAACTTTTCGCAACTTCTCATACGGTGAAAAAATAGAAAGACCGACACCTTACAAACGAACTTTCCGGTCCGGTAGATCTTTCCGTATAATCCACTCATTTCCCCTAAGCTTATCTCAGAGAAATTTCAACTCTTTTTTAGTCGGATAAGTTTGTCGGAACAAGTTTAAATACAATGTCTTTTGAATACGAAATTTAAATTCAGTTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCATAAAAACAAAATGTGGGAACTCCCATAAGAATTGAAAAAGTCCGCTCGAATACCCTCGTCTAGATTCGGCACATAGGCAAACGCTTTAGACCGGGGATATGATATCACTATAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCCGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCGCATTTGTCCTATACAAGTTTTTAGCC # Right flank : TGCAAAAAAATTTTGAGAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATTTTAGAATACGACGGCATAAGGAAAACAAGATATCCAAATCCTACTCTAAAATTCCCAATGATATCGGAAGCGATTCTGAATCTTTAACTACCGGCAGAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTTGCGCGACGGTAGCTCCATTTTCTGGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGGGAATGTATACCGCATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGACAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGGAACCCGAGATCATATCTCTCAAAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //