Array 1 494121-492653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLW010000001.1 Yersinia kristensenii isolate MGYG-HGUT-02461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 494120 28 100.0 32 ............................ AGTTGTCCCAACCATTAGCCGACCATTAACTA 494060 28 100.0 32 ............................ TTTCTAAAAAAACTAAATCAGGGTGACCAAAT 494000 28 100.0 32 ............................ TGAGAAATCAACATTCCGTCATCGTCATTGCA 493940 28 100.0 32 ............................ TACTGGATATTGCCTTTGCCATGAGATTAGTC 493880 28 100.0 32 ............................ TGATGGGAAGGTAACTCCGCATTGGAGGGCTT 493820 28 100.0 32 ............................ ATAATTGGCGGCCGGTTATTTATCCGCATCGG 493760 28 100.0 32 ............................ ACAGGTTTTATAAACCGGAATCCCCTGTTGTT 493700 28 100.0 32 ............................ AGTGAGCAAAGCAGAAATTGAAGAAGGAAAAC 493640 28 100.0 32 ............................ TACTGGATATTGCCTTTGCCATGAGATTAGTC 493580 28 100.0 32 ............................ TACGCTCTGGCCCCATGTCATCGCGGTAGGGA 493520 28 100.0 32 ............................ TTATCTGCGTTGCACTGTTCTATCACCGTCAG 493460 28 100.0 32 ............................ GTGGACTCAGAATCAGTAAGATAAACGGCCAC 493400 28 100.0 32 ............................ CACAGCACATTGAGAAAAGTAACCGGGCGGGA 493340 28 100.0 32 ............................ ACTTACCGTACCTTTGTTTGAGCGCCATACAG 493280 28 100.0 32 ............................ AAATCGTGATGAACTCATACTGAGATTCGAGA 493220 28 100.0 32 ............................ GATTGCGCCGAATTGTTCCGGGGTGACCCAGT 493160 28 100.0 32 ............................ CTGAGATAAAACGGCCCATTATTTTCAAGTCT 493100 28 100.0 32 ............................ CCGCAATGTTGGCGTGGTGGAATGATTTCTAC 493040 28 100.0 32 ............................ AGCATCATAGTATCTTCCGTTATAATTAACGC 492980 28 100.0 32 ............................ AGATGCCAAATCAACATGCGCATCAGAATGTC 492920 28 100.0 32 ............................ TTGACAGGCTTCATTATCAGGCGGCAATATTC 492860 28 100.0 32 ............................ TCACCGTCTGCCCCAATGGTCATGGTGTTTTT 492800 28 100.0 32 ............................ ACTTGAGGTGGAACCAAACCCATGAACGCATC 492740 28 100.0 32 ............................ CAGAACTAACTATGTAAATTGACGGGGCGCCA 492680 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTTCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTGATAAAAAAATCATTTTTTATCACCGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTGATGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 495709-495501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMLW010000001.1 Yersinia kristensenii isolate MGYG-HGUT-02461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 495708 28 100.0 32 ............................ AATATCATTCGATGAACTAGCAGATAGAGTTC 495648 28 100.0 32 ............................ GCTCGACATATTCACCGCACTGGATATTGAGT 495588 28 100.0 32 ............................ TAAATTATCAGATGGGGATGTAGTTGGTATTA 495528 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCAGAGAAGATCCATGGATGGCGACGGAGCAAGGATTTTTCACGTCCTTTAGCAAGAAATAGGCGCATTGTAAGAGTCTTATTAAATCAAATAGTTGAAATTGATAAGTCATTATCAATCAAAATAAGGTGCTAATGATATAGCAATATCATGTCACTCACTACCACGGCGGCCTTGATATCTGGTGGCAATATCGCGTTGAACAGCGCGACTAAAAACTTTTTCACTACTATATTCATAGAGCTATAATAACTTTCTTTCTTCAAAGTAGGGACCGCATCATGACGAATAAGCAAACTGACTTAGCACTCACAGAAAAACAAAAAGAAGAAATTGACGAAATTGCGCTACAACGCGTTCAGGCAATGAACAGCGATGAGTTTCTGTGTAATAGCATTGACCAAAAAATTCACTCGATGGAAGAACAAGTTAAGTCCTATTTCCAATCGCGTTTTTCGTTCCACTTGAACCAAAAAAACCGCGATCAATAAAGGCTCTTT # Right flank : ACATTTCACGATTTTTGGTGAAAACGGGACAATTCGAGTGGAAATATGAGGTTAATGGGGGGGCGGGTATGGCAAAAATATGCACCGCTGCGTATGTCTATGGTGTGGTTCAAGGTGTAGGGTTTCGCTATAGCACGCAACGGCAAGCACTGGCGTTGGGGGTGACCGGTTATGCCCGCAATTGTGACGACGGCAGTGTAGAAGTGGTGGCTTATGGTGAACAACCGGCGGTCGAGCAACTGATGGAGTGGATCAAACAGGGCGGGCCACGGGGCGCGCGAGTTGATCGCCTGCTGACAGAACCTCATCCCGCCACACCATTTGAGACATTTAACATTCGTTATTAGCCGACTCACCCAGAATGTGGCCGTTGGTTAAATACATTTCACCGGTTTTGGCAGCCCGGCAATTTTTGTCGCTTGCTTTGCAGGCCCCTTGGGGAATAAACGATAGAGATAGCGGCTATTACCTTTTTCTTCACCGTATTTCTGCGCCATGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //