Array 1 13490-5119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBT010000004.1 Wohlfahrtiimonas chitiniclastica strain DSM 100676 NODE_4_length_183575_cov_163.145647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13489 28 100.0 32 ............................ AGAAGATGCCGTTAATTGTGGGATATTTACAG 13429 28 100.0 32 ............................ ACCTTTTCTTTCACCACCAGCACCGATAACAC 13369 28 100.0 32 ............................ CACTTGATTGGTGTTTTTCACCAATTTGTGTA 13309 28 100.0 32 ............................ ATATACTTTGCATATATCCAGGAGTGAATGTC 13249 28 100.0 32 ............................ TCGATGATGGTATAGCCTTCACCATAATAATA 13189 28 100.0 32 ............................ AAAACATGAAACTCAGGACTATGTTAAAAAAG 13129 28 100.0 32 ............................ GCTTCGTTATATTTTGCTCTTTCGCTTTCAAA 13069 28 100.0 32 ............................ CGAAAAAAAAACAATAAGCCCGAGCCTGATAC 13009 28 100.0 32 ............................ GGCAACACTTCATCACTAAAATATTTAGTACC 12949 28 100.0 32 ............................ TCTTTGAGCATCTTCCTTATCAATTGGGATTG 12889 28 100.0 32 ............................ AAATGGGGGAACGCAATCAGTTCAGTGGTCGT 12829 28 100.0 32 ............................ ACATGATTTCTCTCCTAATAGATTAATAGTAT 12769 28 100.0 32 ............................ ACGAGAAGGCGTATATACAACAGATATTGTAA 12709 28 100.0 32 ............................ TGGTGAATCCCCGATTTGCTATGAAGAACAAT 12649 28 100.0 32 ............................ ACATATTGAGAAAAGAATTTTTCATAAATTTT 12589 28 100.0 32 ............................ CCTCAATTAATGCAATCGTTGAACTAAAACAT 12529 28 100.0 32 ............................ TTTGTTTTTTTCAGCATAAACCCTTTTTGCCC 12469 28 100.0 32 ............................ TGATCCGCTTCATATTCAACACTTAAACTTTT 12409 28 100.0 32 ............................ CGCTGTCTGTGAATATGACAATGCCGTTTTTG 12349 28 100.0 32 ............................ ACAGGACAGGCGGTTATGGCGTGGCATTTCAT 12289 28 100.0 32 ............................ GCCCTTTTTTATGTCCTACTGAAAAGTAAGGA 12229 28 100.0 32 ............................ TGCTGAAAATAGTCCAATAGTTGGACACTTTC 12169 28 100.0 32 ............................ GCTGCGGCTACTTTTGGACGTGTAAAGAATGC 12109 28 100.0 32 ............................ TTCATCCTGCACGATGCATACGGTTTGCCCGC 12049 28 100.0 32 ............................ TGAGTTGTGCTTCTGTTGATTTTACACGAACT 11989 28 100.0 32 ............................ TGGCCAACAGAGCCGCCCACACTGCCTGAGCG 11929 28 100.0 32 ............................ TAAGCTTTAAAATGCTATTGAGCATTCATCGT 11869 28 100.0 32 ............................ GAGCAAGAAGCATTAGAAGCGAAAAGATTAGC 11809 28 100.0 32 ............................ TGGTGTCGTGATGCAAGCCACATTCGTTACAT 11749 28 100.0 32 ............................ TGGCGTTGTTGCCCCAAAAATTGATAAAAATG 11689 28 100.0 32 ............................ TTCACCAAGACGGAATGGGGTAGCACTCATGC 11629 28 100.0 32 ............................ ATATCATCACCGCGTGCGGTAAATCAAAGCCG 11569 28 100.0 32 ............................ ACAAACAAGCGGACTTATTCGTTGATTTTATC 11509 28 100.0 32 ............................ TAACTCTTCCATGATTTTCTTACTCAAAACTA 11449 28 100.0 32 ............................ ATCTGGCACTTCTTTAAGTTGTGTTTTAAGAA 11389 28 100.0 32 ............................ CTCATGACTACAATTGCAATTTGCTTTCTTTA 11329 28 100.0 32 ............................ AATGGCGTGGGATATTTCAATACGAAAAAATA 11269 28 100.0 32 ............................ TGTCTGGACTGCTGGAATAACTTTGTATTTTA 11209 28 100.0 32 ............................ GCCAAAAGCTCTAACAAATAATTCTGTTGAAC 11149 28 100.0 32 ............................ ATGAAAGAAATACAAAGTTAAAGGAAAAAATA 11089 28 100.0 32 ............................ GTTATATTGAAAATCAAGTGTTGCTGGATGCC 11029 28 100.0 32 ............................ ATCAGGCACAGTATTAAGTTGTGTATTAAAAA 10969 28 100.0 32 ............................ CACAAGATGATATTTTAAAAGCTAAAGTATTG 10909 28 100.0 32 ............................ TTTACTAAGATTCTCTTTTTGCTTGCTTAATG 10849 28 100.0 32 ............................ ACAACCACATACGATCTTGAGTAACTCAGAGC 10789 28 100.0 32 ............................ TTGGCAAACTTGGCTGAGTTAAACATCAAGCA 10729 28 100.0 32 ............................ GAAACAGGCATGACGGGATCAGAAAAGCGTAC 10669 28 100.0 32 ............................ TCCGAAAGGCGGAAAAGGCAAAACTAAAGGCG 10609 28 100.0 32 ............................ AAAGGAAAATATATGGAAACATTCACATGGTC 10549 28 100.0 32 ............................ TCTAGCGCGTGATTCGCATTTGCCACAATCTC 10489 28 100.0 32 ............................ ATCTCCTTTTTATGAATATGCTAAGGCGGAAC 10429 28 100.0 32 ............................ AATTGTTAAGCTATTCCCGATTGTTAAACGAA 10369 28 100.0 32 ............................ ACCACCAATCTCTTTTACTTTACCTGCTACAG 10309 28 100.0 32 ............................ AGCTATTTTTTGCCCTAATACGTTTTTATGTT 10249 28 100.0 32 ............................ ACAGGGAGAGTCAGTCGAAAGACGTGCAGAAC 10189 28 100.0 32 ............................ AATCGCATTTAAATTTATTAAATTCTACTCTT 10129 28 100.0 32 ............................ TGATGAAATAAAATTGGATAGCGATAAAACGC 10069 28 100.0 32 ............................ TTCAAGTTGTTTAAATTTAAAATATGTTTCAG 10009 28 100.0 32 ............................ GTGAATAGGGAAATGCGTTGTGGGTTTACTTC 9949 28 100.0 32 ............................ TTGACGCATTTATCAACCACATCAATGTGACT 9889 28 100.0 32 ............................ AATGACAATTCGTTTAAGTCTTGGAACACTCG 9829 28 100.0 32 ............................ GAGATAACGTTCCGCTGCCGCATACGTTTCAG 9769 28 100.0 32 ............................ CGTTTGATTGTTCACAAAAAATGATTCGTTCG 9709 28 100.0 32 ............................ TTCTGTGTCAATTGTGAACTGATGTCATCGGT 9649 28 100.0 32 ............................ AAACTTTGACGATCCATATTACGACATACCAC 9589 28 100.0 32 ............................ TGTTACTTGCAGCTCACCTGTGATGTCAATAG 9529 28 100.0 32 ............................ GCTTTCATGTGTAATCATCGTGATTAAGCTAG 9469 28 100.0 32 ............................ TTGTTCGAGGTTTTCAATGATGCCGCCGCTAT 9409 28 100.0 33 ............................ GGCATCTAATGACCGCGCTGGCGAATTGGTATT 9348 28 100.0 32 ............................ TTCGCGGCGATAGCGTTCAGTCATTGGGTGGC 9288 28 100.0 32 ............................ ACGATAAAAATGCGTATGCTCCCCAACTAGTT 9228 28 100.0 32 ............................ ACAGATTTAGCGCATCTTCTAAATCAATTTGC 9168 28 100.0 32 ............................ TTGAGTGTACGAAACAGAGCCGTCTGACTGCA 9108 28 100.0 32 ............................ AATTTTGAACTTGTAATAAGCAAATGCGAATA 9048 28 100.0 32 ............................ TTGCTGATCAGTCCACGATTCACTTGTTGCGA 8988 28 100.0 32 ............................ AGGCAATCTCGCTTTACCTTTGTTTTTTTCAG 8928 28 100.0 32 ............................ TAACGTTAAAAATAATATGATGATTGGAGCAA 8868 28 100.0 32 ............................ AAGGCATAGTATTGTGATCAACTGGATAAAAT 8808 28 100.0 32 ............................ TTTTGCGTTGTAATAACAAATTGCTAAACCGT 8748 28 100.0 32 ............................ CATGTTTTGCAAATGGCGCTCTAACTGCTGCT 8688 28 100.0 32 ............................ GAGCGCGTCTAATTCAGGCTGAGTCAATGGAC 8628 28 100.0 32 ............................ TAGTTGGGAGGGCGCATCACCCTCCCCGTTAC 8568 28 100.0 32 ............................ TATTACTCCTAGCCCAAAAGCACCAGTCTTCA 8508 28 100.0 32 ............................ GCGGCATAACTTAGGCACTTTTTCATCAATGC 8448 28 100.0 32 ............................ GATTGTAGTCCATAGTTTTCTTGAGAATGGAT 8388 28 100.0 32 ............................ GACAAACAATGTAAAAGTACCTTTAATTTTTC 8328 28 100.0 32 ............................ AAACAAAAAGAAAACGTTAAAAAAGGCGTATC 8268 28 100.0 32 ............................ TATTTGGATTATAGCCGTGGTATGTATGTTCT 8208 28 100.0 32 ............................ TAAGTGTGCTGTTACTGTTTGTTTGAGCAGGC 8148 28 100.0 32 ............................ CCATAAAATAGCAGCATGCCCATTGATTGGCG 8088 28 100.0 32 ............................ ACATAGGAAACCACGCTGAAAGAATGCAATTC 8028 28 100.0 33 ............................ AGATCATTTCGCCTTTCATTCGTCCAGCTCTCA 7967 28 100.0 32 ............................ AAGATAAAGCACCATTACCGCACCATTTTTTT 7907 28 100.0 32 ............................ TGCTCGATCACATGTGAAATTATTTGATCAGA 7847 28 100.0 32 ............................ CCGCGGCAGCGGTCTAAGTTTGTGATTATTAC 7787 28 100.0 32 ............................ AAAAGTGAGAGCGATTATTTTAACGCCGTGAT 7727 28 100.0 32 ............................ TGGGCGCCCATCGATGTGGCGTGCGGATCTCG 7667 28 100.0 32 ............................ ACTGAATGTTGGGCTTGTGAGCGCAAAAAGAA 7607 28 100.0 32 ............................ TTTTGTTCTGTCACTTTAACATCAATCACAAT 7547 28 100.0 32 ............................ GCCTTTTTTTAACACAAAGAAAACAACATCTT 7487 28 100.0 32 ............................ AAAACAACGGTTTCAGAGCTTGCATTGCACAC 7427 28 100.0 32 ............................ TCTTCTGTCCAAACTCTTGAGTAATCCTTTTT 7367 28 100.0 32 ............................ CTCTAAATAATCTTCAGTCAAAAGCCCTTCAG 7307 28 100.0 32 ............................ AGCAAAGGGAAGAAATTTCAAATAGTATTGCA 7247 28 100.0 32 ............................ GCATCTACTAATCTCTGCCCTTCATCGTCTGG 7187 28 100.0 32 ............................ TTTGTTATCTTCAATCCATGCTTCGCTAATGG 7127 28 100.0 32 ............................ ATCGTCATGACATACAACAATCGCGGTGACCT 7067 28 100.0 32 ............................ GTAGCCATTCTCATTCATTCTTAAGCCGAATG 7007 28 100.0 32 ............................ ATACACGTGGGTCATATATAGTGATGATTTAT 6947 28 100.0 32 ............................ CAGAGTTACCTTTAGTTTACCTGTACTGACCG 6887 28 100.0 32 ............................ TTTCATCGTTTCTGGAACATGTAACTGAATCA 6827 28 100.0 32 ............................ ATCAATGCCGCCGATCACTTCCATAACTTTAT 6767 28 100.0 32 ............................ ACTGTTAAACCCAGTGCGCGTTGCAATGTGCG 6707 28 100.0 32 ............................ ATACTCGTGGGTCATATATAGTGATGATTTAT 6647 28 100.0 32 ............................ AAATTTACTTGCGTACGAAACAGCAAGCAAAT 6587 28 100.0 32 ............................ AATATGATTTCAAGTAGATGCTTTTTGCGATC 6527 28 100.0 32 ............................ TATCTGCGTTATTGGGATCAACACGCAAGAAG 6467 28 100.0 32 ............................ ACCCAAGCCGCCGCCACCTTCAGCAAGATTTT 6407 28 100.0 32 ............................ GCTCCACAGATAATCCGCGCGTGATGATCCAA 6347 28 100.0 32 ............................ ATCATTGGATCAGCGTAGGAATGGGAATCCAT 6287 28 100.0 32 ............................ GATAAAAAATTGATTTGAATGTACTTCAACTT 6227 28 100.0 32 ............................ ATTGAGTCATAAAGCCAGAAGCAGCAATTAAA 6167 28 100.0 32 ............................ ACATCGCACAAAACGAACAAAGCGCAAAGATT 6107 28 100.0 32 ............................ ATGATCGGCTTTCCAGTGTTATTCGCATACGT 6047 28 100.0 32 ............................ TTCACGCATCAACAAATCGCCTTTCTTCAAGT 5987 28 100.0 32 ............................ AATATACATCACGCCTGACAACATCGCAGCTT 5927 28 100.0 32 ............................ GTCCTTGCACGCTTCTTGATCTTCTTCTGAAA 5867 28 100.0 32 ............................ GATTGAGGCAACCCCACTGATCCCATACAGTG 5807 28 100.0 32 ............................ GCCGACTGTTCTAACTGCTTTATCGACCTTTT 5747 28 100.0 33 ............................ TTTTCGCCACCTCTTTAATCATCATTTCTTTAT 5686 28 100.0 32 ............................ TGTGCTATTGAAGCCCTTTGGCGTTGTTTCAA 5626 28 100.0 32 ............................ ATCATGCATTGTAAGCGTCAATGACTCCCCAA 5566 28 100.0 32 ............................ TATTACCCATCGCAGAAGCCTACCACGCTTTC 5506 28 100.0 32 ............................ AAATAGCGTAGCATGTGATCCCCATTTGTCGC 5446 28 100.0 32 ............................ AAAAGGGAAACTTTTTAGCTACGAGCGCACCA 5386 28 100.0 32 ............................ ACCAGATGGAATCGGAGCACCAGCTGATATTT 5326 28 100.0 32 ............................ AAAAGTTAAAACAATCGGATTTTTTGTATTTA 5266 28 100.0 32 ............................ TGACGCTTGCCCACCTTTTCCCCATCCTTGCT 5206 28 100.0 32 ............................ ATTGCAGAACTTTACCACGCGTTCACCATTGA 5146 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 140 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCCAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAGAGTAAAAGTGACAGCACCAACGGAGGCGGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTTCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : AGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGATATTGGTGTGAATGCAGAAATTGAAAATAAAAATGAGATTTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGTGCGTTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGCGGACCTGAAGTTTGTACGCCACTTGAGCGTAATTCATCCATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 145485-142315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBT010000004.1 Wohlfahrtiimonas chitiniclastica strain DSM 100676 NODE_4_length_183575_cov_163.145647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 145484 27 75.0 174 .......ATG...A.C...-....T... GGTTGTGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGCCATTGGAAAAGAATTGGTTTTATGGCTATAAACTGCCGAAATCATGATGTTTCCAATGGCTCTGTAATATTTTTAATT T [145481] 145282 28 100.0 32 ............................ CAACTCTAAAACAACAACATCATCAGAATCAC 145222 28 100.0 32 ............................ ATTGATCTAGCTAATGCCTTCTGGGACAAATT 145162 28 100.0 32 ............................ ACGGCGTGCGGCGATCTCTTCAGCGGTCCCCA 145102 28 100.0 32 ............................ AATGTTGAGGAAGTAAACCTCTTTGTCACTCA 145042 28 100.0 32 ............................ GCTTATGCAATACACAGGCCTAAAAGATAAGA 144982 28 100.0 32 ............................ ACTTAGAAAAACAGAGCAAACAATTATTAGCT 144922 28 100.0 32 ............................ GCAGTTAGAAAAAAAGGCGTTCGGATTCGGTA 144862 28 100.0 32 ............................ TCGGAAATTCAAAGACACTTGTTGCGAGTCAA 144802 28 100.0 32 ............................ TGCTATAAATCCTGCTGCTTTTTTAGCTAGTC 144742 28 100.0 32 ............................ ACTTTAATCAGTGGGCTTTTTTTACGTCATTT 144682 28 100.0 32 ............................ GCCCGATGTGACGCTGACAATCAAAGCGAAAA 144622 28 100.0 32 ............................ TGCGGCTCTAGCTCATTGCCGCGCATCATTGC 144562 28 100.0 32 ............................ TGAAGCGCCTTCAACTGGGACGGGGCAATCTC 144502 28 100.0 32 ............................ CGAATGGATATCGCTTTAGATATTCTTATGGA 144442 28 100.0 32 ............................ TGCAAATTCAACATTTGTAAAACCGCTTGATC 144382 28 100.0 32 ............................ CTCCGCAGCTTTGTCGCTATCTTTGACAATAA 144322 28 100.0 32 ............................ ATCTGTGCCATGCCATTTTATGGCTTCATTGC 144262 28 100.0 32 ............................ TTTCGTTCTGCAGGTGTAGCGTTCTCGCCTAA 144202 28 100.0 32 ............................ CATCGCCGGTGTTCGTTTAGTCATCGCTAATT 144142 28 100.0 32 ............................ TGGTCACCGATCTTAAAGGGCTTTACAAGTCT 144082 28 100.0 32 ............................ TAAAGCAATCAACTGATGGTGCTAAACTAGGG 144022 28 100.0 32 ............................ TTAATGCCAAGTGCAGCACCTGATTTGAATAT 143962 28 100.0 32 ............................ ATAAATTTTCTTTCAAAAAACTGTTTACATTA 143902 28 100.0 32 ............................ GTCATGTCAGCCATTGACGATATAAACTGATC 143842 28 100.0 32 ............................ CAAAGCCTTCGCCAGTTTTAAAGACTCCTGAA 143782 28 100.0 32 ............................ TGTGATGAATATTTCGCTGCCTTTTTGGAAAT 143722 28 100.0 32 ............................ ACCCACAATGCCGCCAAATCGCACCATTTCGG 143662 28 100.0 32 ............................ TTTTAAGCGGCGATCAAAGTTATTCTGAACAG 143602 28 100.0 32 ............................ AACACGCTTGTGCAGCGCGGTAGTGTTAGCAT 143542 28 100.0 32 ............................ CGCATTATTTACTGAAGCCACGTTAATATCTG 143482 28 100.0 32 ............................ AGATGGTGCGCGCGTGATTGCAAAAGGCGGTG 143422 28 100.0 32 ............................ ATTTGGGATTGACCAATCTTGACCGTTAAAAT 143362 28 100.0 32 ............................ GCTGTCATAATCGATTGTTCCCGCATTCGCAC 143302 28 100.0 32 ............................ TGTCGGCACATCGCTCCATTGTCCTGTTTGCC 143242 28 100.0 32 ............................ AAAATGGCATAGCAATGCTGACCTGTATCAAG 143182 28 100.0 32 ............................ TCAAGCGTGCCCTCAATGTGTTGAAGTCGGTT 143122 28 100.0 32 ............................ GAGATATCTCACATCTTCTTTCTGCTTCGTTT 143062 28 100.0 32 ............................ TCGCCCTTTTTGAATGATGTGCGCATTACTGG 143002 28 100.0 32 ............................ TTATCGTTATTGTTCGATTATTAACTTTTGAA 142942 28 100.0 32 ............................ AAAAGAGTCCATCTTCCTTAATGTTGCGGCGC 142882 28 100.0 32 ............................ CCAAGATCATGGGACAAATCGTCCTAACAAAG 142822 28 100.0 32 ............................ GCGTAGCATAACTTGAGAGTAGTCGCTACTCG 142762 28 100.0 32 ............................ TTTTGATCAGCATTGGCAGGTATCTCATAAAA 142702 28 100.0 32 ............................ GTCCTCGATAATCAAATCCGAGCCCGTTGTGC 142642 28 100.0 32 ............................ ATCATCTGATCTTAAAAAGTATTTGACAAATA 142582 28 100.0 32 ............................ GAGCTTGCATTACTCCTGTGATGATGTATCTC 142522 28 100.0 32 ............................ GCGTAAATCATTTGAATCATGCGCCACAATGT 142462 28 96.4 32 .............C.............. TAGCTTTAAATGCCTGAGCCTTATCAGGATTA 142402 28 100.0 32 ............................ ACAATACCGCCATTGGCATAACCTCGTAGCCT 142342 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 51 28 99.4 35 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGTATCGTCAATGAAGTTAAGCACGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACACATAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGTACATTGAAAGTGACGCGATCTGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : GACCGGAGCTGTGCCATCGCAATGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCACCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCTCGGATGCCCACACGATATTTACCAAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCTACATTGCCATAACCATGGGCGACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCGGAATGGCGCGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //