Array 1 2424099-2427021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN997841.1 Propionibacterium freudenreichii subsp. shermanii isolate PFREUDJS1 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2424099 36 100.0 37 .................................... CTGGGTAGTAGTATAATCTTACTTGTTGATGAAGGGG 2424172 36 100.0 38 .................................... CCGACGCTTGCGTGGAGCAGCTCGGCGACGTCCTTCTG 2424246 36 100.0 38 .................................... TGTTGGATGCCTGGCTGGTGGGGATCGTGCGCCACAGG 2424320 36 100.0 36 .................................... CCCCGAACTGGCGGTCCCGGCCGCCTCTTCTTCCGT 2424392 36 100.0 39 .................................... GCGAAGGGGATCAGTTTCCAGCCGGTCGAGGTCCTGACG 2424467 36 100.0 35 .................................... TGTAGCAACAGTGCTCCAGCATGTCAAGTGTGGGG 2424538 36 100.0 37 .................................... ACGCCCGGACGTGACATCCATCAGTTCTTCGACCCCG 2424611 36 100.0 38 .................................... CCTGTCATTCGCCCATTGGGCCGCTTGAGAAGCTTGAT 2424685 36 100.0 36 .................................... GCTCGGGGATGCTGCCCTGGCGATGCTGCCGACCGC 2424757 36 100.0 37 .................................... GACAGCGCGGTCCGCTCGATCATCGGCGACCAGCCCT 2424830 36 100.0 35 .................................... GACGATACAAGACTGACCTAACGAATAAGGAAACG 2424901 36 100.0 37 .................................... GCCTCCAGCGGTGGAAAGAGCGGCAGCGCTACGGACG 2424974 36 100.0 35 .................................... CCGACCGCCAAGATGATCAATGAGCGGAAGCACAC 2425045 36 100.0 34 .................................... TTGAAGCAGGCGCCCGCAGCGCCCCATCGCCCGG 2425115 36 100.0 37 .................................... GACCGGGTGAAGCGCGCCGGGGGCCTGAGCATCAAAC 2425188 36 100.0 36 .................................... GGATCGTAGCGGGGCTGTTGGCAGCAAGTCTCGCTG 2425260 36 100.0 35 .................................... GACTACAGGTGTTCGATCTGGTCTGTGGCCGTCGA 2425331 36 100.0 36 .................................... GTAGGTGGAGGGGCGCAGACATTAAAATCTACGCCC 2425403 36 100.0 36 .................................... CAGAACAACGCTCGAGGAAAGGGTTCCAATCTCATG 2425475 36 100.0 38 .................................... GGTGTTGAGTTACCGCCATATTCGGCCAGAGTCTTGAA 2425549 36 100.0 38 .................................... CCGTTTCGGCTGTCGCCACCAACTGCTCCGGGATGGGC 2425623 36 100.0 35 .................................... ACACCCGCCGCGATCGAGGCCGACCTGAAACGCTG 2425694 36 100.0 39 .................................... GACGGCGGGCCAGTTGCACAACACGGCCACCCGCACCAA 2425769 36 100.0 37 .................................... TTCGCGGTGCGGTCGGCAATGCTGGACGCGTGCCCGA 2425842 36 100.0 36 .................................... CTCACGCCCGGAACCCATGCCGGAAGATCAGTCGCC 2425914 36 100.0 34 .................................... GCGGCGCCTCAGATGGACCTGTCCAGCGGTGAGC 2425984 36 100.0 36 .................................... ACGGCCTCGCCGTCGCGGCTGATGCTCGCATGCATC 2426056 36 100.0 35 .................................... GCTCGGCGACGCCGCCCTGGCGATGCTGCCGACCG 2426127 36 100.0 35 .................................... GTGGTTTCGACGCCCTTGTCGGGGCCGTGCCTGCC 2426198 36 100.0 34 .................................... GCCGGTGCTCCCGTCACGCCGGGGCGTTCTTCGG 2426268 36 100.0 36 .................................... ACCTGGGCGGCCTTCGGATTGTCCAGGTCAAAGAAG 2426340 36 100.0 35 .................................... GGCGAGTTGGCTCGGACCTCTGGACAATTTTTGGA 2426411 36 100.0 36 .................................... GCAGCTGCTGGTCGCTTTGGTGCAGGGCATCCTCTC 2426483 36 100.0 37 .................................... TATTCACAGGATGCATGGGTTCGCTCACATATGGACG 2426556 36 100.0 34 .................................... CCGAGATCACAGATGCCGAGCTCATCACCATTCA 2426626 36 100.0 35 .................................... AGACGTGTCAGGCGACAGCGGAACCAAGACAGCCG 2426697 36 100.0 36 .................................... TTCGCCGTGAAGACCCGCGAGGCGGAGGTCGCCCGT 2426769 36 100.0 36 .................................... GGCGGGTCCGCGAGATTCGTCGGCGTCGCACGGCGG 2426841 36 100.0 38 .................................... GTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAG 2426915 36 94.4 35 .....T.............................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 2426986 36 94.4 0 .......A...........A................ | ========== ====== ====== ====== ==================================== ======================================= ================== 41 36 99.7 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CGACCTGTCACTGAACGACAACCCCACCCGCGCCATCCGCACACTCCACCGATCAGACCCCCGCCGACCGGGAGTGTTGCTTCGACGCTATGACACCACCCTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : CTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //