Array 1 24602-23430 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVR01000012.1 Acinetobacter ursingii strain TUM15489 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24601 28 100.0 32 ............................ AATACGGTCTAAATTGTGTCCAAGGCTCATAT 24541 28 100.0 32 ............................ ATTCCATGAAAAACAAATTTCGGAGTCTTTTT 24481 28 100.0 32 ............................ TAGCCATTGCACCACGTCCACCACCATTAACG 24421 28 100.0 32 ............................ TTCTAGCCCAGTCACCCACTGGGCATTTTTTT 24361 28 100.0 32 ............................ GCAGTATATTGGGGTTGATTAGGACTGTTGTA 24301 28 100.0 32 ............................ ATTTTCATTAGCAAATTTTTGTGCTTCAGCTT 24241 28 100.0 32 ............................ GACAGTTGAACCGATTAATGCAGCACCAACAC 24181 28 100.0 32 ............................ GATTTGTGGCAAAACTTTTTTCTACGAACAAC 24121 28 100.0 32 ............................ TTCGTTTGCACCAAGCTGCCAAATTCTTTGGA 24061 28 100.0 32 ............................ AGAACAAGGCACATTCGTTAAACAGCGAAAAC 24001 28 100.0 32 ............................ GTACCGCATTGAGCCAAGCGATACACCTGAAG 23941 28 92.9 32 ....C...............C....... TATACAACTCCAAAATCGTCAGATATACAGTT 23881 28 92.9 32 ....C...............C....... TTCCCCCGTATTTGCAGCCAAAGATTTATGCT 23821 28 92.9 32 ....C...............C....... ATCTTCGGTTTTTATTCCAATAGTGTGCAATA 23761 28 96.4 32 ....C....................... ATATGTAGCGCCTAAAAATTATATTGTTTTAG 23701 28 96.4 32 ....C....................... TAACTGTAGTAGAGAACCCACTGTCAGCACGA 23641 28 92.9 32 .T..C....................... ATTTAACTACTTTGCACAGCAGCAGCCACAAC 23581 28 96.4 32 ....C....................... GCAACGAACAGTTAGAGAGCAAATGCTCACGG 23521 28 92.9 31 ....C......................G ATTGGAAATGGACAAGTTTCAGAAGTGGCGC GATA [23497] 23458 28 82.1 0 .A.................A....TTT. | C [23448] ========== ====== ====== ====== ============================ ================================ ================== 20 28 96.8 32 GCTTTCTATCGCATAGATAGTTTAGAAA # Left flank : CTTAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAGCGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTATTTTTAAAGCATAATATCAAATTATTAAATTAACTCATTGTTACTAAATGATTTATTAATAAGATTTTATA # Right flank : TTTCCGTGATTCCAAGCATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGTCCGATAAGCCAAACATTCCTGCGTTTCTTCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAAAATAAATTTGATGAACATTGGATTTTCTATAAATAAGTATTTGCCGATATCAACTCCAATTTTAAAACGCAAAACAGCAAATAGAAACCATTGAATAGACATGTTTCATAAGTCCCTGTCATTTTTGCCTATGGAAGAAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGTCCAACTGTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTCTATCGCATAGATAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GCTTCCTATCGCATAGATAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 809-122 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVR01000226.1 Acinetobacter ursingii strain TUM15489 sequence226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 808 28 100.0 32 ............................ GCTTAAATTACTTCAAGGTCATAATGTTTATG 748 28 100.0 32 ............................ TGCCCAACTGTTGTTTAAGCCTGCTGCATTCC 688 28 100.0 32 ............................ TAAGCGCAGATTTACCATGAACTAAAGTTGTT 628 28 100.0 32 ............................ AAGCGGTCAAAAAACTTAAAGATGAGAAGCAT 568 28 100.0 32 ............................ TATAAGAAACATTAGTTTCCAAAGAATAAAAA 508 28 100.0 32 ............................ TTCACTACACCTCCAAACGCGCCTGCGACTAT 448 28 100.0 32 ............................ ACCAATTTTCCCTGCAAACTCAGCATCGTATT 388 28 100.0 32 ............................ TTTTCGCACAGCAAATCTGCGCATCATGTACG 328 28 100.0 32 ............................ TACGGAATCAATTAATCAGTTCACTATTAACA 268 28 100.0 32 ............................ GTAGATATGACCAAAAAAACTCAGTCAGGGGA 208 28 100.0 32 ............................ TTATAATTAAAACATAGATGAGGAAATTGACA 148 27 89.3 0 ......................-..G.C | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.1 32 CTTTAATACCGCATAGGTAACTTAGAAA # Left flank : TGATTTAAGAATCGTCTCACCACTTAATTTGCCGCTGGCGATAGGCGTAAGCACACCGATGGTTAAAATAATAACGCCAATATTTAAACCATGTTGTTGTAAATAAGGGAAAAATTGACTTAGTGGGGTAAGCTTAAAAAAGATTAGAACACCCGCAGCAATCGTGACTGCCGCATTTTGACTGAAAATACCACAGGCCAGTAAAACGAGTAAAACCAACAGATTGACATCAAGCTGTGACATGATCATGGTAATAAAAGCGTATATTGGGGGAGTGGTATATTGTATAACGTTTTTTTATTTTACCAATGGTTGAAAAAGATCTTTTTTTACTCTGGTGTATAGTAGCTTACCAATTAGGGCTATAGAACCCAATATAACATGACTCTTTAATAATTTAATAAATACATAGACTAATCCTTTGAGTGAAAAACATTGATTCAAATGAATTTTGAAAGCTAACTTCTTGTACGATAAGTTATTTTTTATAATAATTTACT # Right flank : CTTACGCATTGACGGATTCAAAAAAGTATTAAAATACTTTATAAAGTATCTGTGATCAGACGAATTAAACATGCTTCTACAGCAACTTGTACTCTACCCATTTATATGGGCTTTCTCATGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAATACCGCATAGGTAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1518-1250 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVR01000293.1 Acinetobacter ursingii strain TUM15489 sequence293, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1517 28 100.0 32 ............................ AAATCCCCATAAATCCCTTCCGATCCCTCTGA 1457 28 100.0 32 ............................ ATCTAACCATTGGCTTTGCGGTAGCAAATCAG 1397 28 100.0 32 ............................ AATTACACCAGACAATTGATTTCTCCTTTATT 1337 28 100.0 32 ............................ TCAATATGGAAAATCATCATGTTGCTGGTTGT 1277 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTTAATACCGCATAGGTAACTTAGAAA # Left flank : AATGTATATCGTTGGCAGAAGAAATTATTTAGACCAATCATCAAAGACTTCATTGATGACTTTATTCTCGATAAAAATCATCTGCTACCACAGAGAATCTATAAATAATACTGCGTAAGTCCTAGTAACTTAGAAAGTATTTATGAAAAAGGTAAGCAGTTAGGCGA # Right flank : GCTTCGATCTACCGAAGAACCACACTTAAACCCTTCATTACCGTACAGGTAGAGGTAGTTTGAAGAATTGCTCAATGACGAGTTAAATTTCATGATCCTATATCTTTCATTGTAAGTATTTCGGAATTTTAAAGTTATAAAATCAGTTAAACTATACCATCGCTTATTTCGGATATTGTTATGCTCTTGGAAAAAATGTTGCAATCACAAGGTTTTGGTTCACGCAAACGTTGTCAGCAACTGATTAAAAATGGAGCAATAAGCATTCATAGCGAAGTGCAAACAGATCTAAAATGTCGTGTCGATGTGAATGGTTTAAACTTTTCAGTATATGGTCAAGATTATACTTATCGCGAAAAAGTGTATATTGCGCTGAATAAACCTCAAGGTTTTGAATGTTCACATCAACCTCAGCATCATCAAAGCGTCTTTAATTTATTCCCAGAGATTTTAAGAGAACGTGGACTCGCTGCGGTTGGGCGTTTAGATCAAGATACAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAATACCGCATAGGTAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30933-22384 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKVR01000020.1 Acinetobacter ursingii strain TUM15489 sequence020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30932 28 100.0 32 ............................ CACTCGCAACAGTGCATGCGAGTAATTCGCCG 30872 28 100.0 32 ............................ TCATTCATCAATAAAGCTATTAATGCCTCATC 30812 28 100.0 32 ............................ ATTGGCCATAATGAAGTTAAAAAGAAATATTC 30752 28 100.0 32 ............................ TAGCAGATTTTCTAAATGATATTAATAAAGGT 30692 28 100.0 32 ............................ ATGGAAATCGTGACCAATGGTAATAAAACAAT 30632 28 100.0 32 ............................ ACTTCCCCAGATCAAGCTCAACTAGATGGTTT 30572 28 100.0 32 ............................ GTTCCACATGTCTAAATGCACAGGTTAAGGAA 30512 28 100.0 32 ............................ TTTTCAGGCATGAGAATGTCCAAAACTTTGGT 30452 28 100.0 32 ............................ GTTTTGGTATTGATCAATGCGGTTTTTTGAAT 30392 28 100.0 32 ............................ ATCTTGGAAGCCTTTGCGTGTTTACACTGATG 30332 28 100.0 32 ............................ ACACGGAAACGGAACAAAGCCTAGTGGAAATG 30272 28 100.0 32 ............................ GCTTTTAAGCCCCTGAAATTACAGAAATAGAC 30212 28 100.0 32 ............................ CTGGAGACGGTAAGCCGTTACAGATTACTGAG 30152 28 100.0 32 ............................ AATCAAGCATTGCATTTAATGTCGGATAAGCC 30092 28 100.0 32 ............................ TTCATCTCGAGGTGAATACGGCTACTGTGTCG 30032 28 100.0 32 ............................ GCCTAACATCCCTGCAACACCGCCACGAGCCA 29972 28 100.0 32 ............................ ATACGTGGCATTTTGACCGATCGTGTTTCTAA 29912 28 100.0 32 ............................ TGTTTCAAATGATGATTTAGCAGATGCATTAC 29852 28 100.0 32 ............................ TGATTGTGATGTTGGCATCATGTGTGAAAACA 29792 28 100.0 32 ............................ GTATGCTTTAAGCCACTCATTTAACTTTTGAG 29732 28 100.0 32 ............................ TTTATGATTGTTAATACTTGATCCGAAAGTGG 29672 28 100.0 32 ............................ GTGTACTTGTACATCAGCAACGTAGTATTTAT 29612 28 100.0 32 ............................ TTTGTCAAAGTCGAATGAAATTGCTTTGTCAC 29552 28 100.0 32 ............................ AGTCATGAAAGAGTTATTCACGGCTCATTATC 29492 28 100.0 32 ............................ GATCCAGTGTCTAAATTGATTGATGATGAAAG 29432 28 100.0 32 ............................ GTTACCAACGATCTAATCCTACTTTTTTACAA 29372 28 100.0 32 ............................ AATTGTTCCTTAAACTCATTGGATTTGACATA 29312 28 100.0 32 ............................ GACTCATATCACTTTTGGAAAATACAAAGGCA 29252 28 100.0 32 ............................ TGAATAAGCAAATCTTTGTCCATGCTCATGCT 29192 28 100.0 32 ............................ TTTTCAGCAACAAGTTTAACCATATCTAAAAA 29132 28 100.0 32 ............................ AAGAAGTCTTTGTTCTCAGCACATTTGCTCCA 29072 28 100.0 32 ............................ ACCCAAAGCACCTGAATTTTTGGCGTGATGAG 29012 28 100.0 32 ............................ TTATCACCAGTAAAGCCAATTGAGCTTTTACC 28952 28 100.0 32 ............................ GTGGAAAGTTGTCAGGGCTTTTTGTTGTCTTG 28892 28 100.0 32 ............................ ATGCGAGCCAATGCAAGTGTGCAAATGGCCTT 28832 28 100.0 32 ............................ GCATTGTTTGAAATTGTCTGATCTTTAACTGA 28772 28 100.0 32 ............................ AACTTAACCCCAAACGATCTTGCGCCTTTCAA 28712 28 100.0 33 ............................ TTCGATACGAACATCTTTGAACTGATAATCAGT 28651 28 100.0 32 ............................ GCCAAGATCTGGGCGATAAATGATCTGATCGC 28591 28 100.0 32 ............................ TTTTATCAGTGCTTTTTTAAGATATGGATCTA 28531 28 100.0 32 ............................ GCGGTGCAGTGGTTCCTGTTCAAAAATGGACC 28471 28 100.0 32 ............................ GATATCAAAACCAAGATTATCGACTGCAAAGA 28411 28 100.0 32 ............................ AACATGCCGAAAAAATGGCAAAGAATCCCGAC 28351 28 100.0 32 ............................ GCAACAAGAAATTCGCGCTTCTTTATGTCAGC 28291 28 100.0 32 ............................ TGAATTCAATACATCAGCCCTTTTAGCTCAAA 28231 28 100.0 32 ............................ GACTAAAAACTCTCGATATCCGTTTAAGTAGC 28171 28 100.0 32 ............................ AATCACCGTACCATTCAAAATGCAAACGCTCT 28111 28 100.0 32 ............................ ATAAATCGGGACTTGAACTTCAAAATCCTGAA 28051 28 100.0 32 ............................ ATCATGGTCAAATATAATCCAAACAAGCCCTA 27991 28 100.0 32 ............................ TTTGCAATGAAACGTGCATGGGGTCAAGTCTG 27931 28 100.0 32 ............................ GCTACTACTAACACACCGCCATACGTCGAAAT 27871 28 100.0 32 ............................ GATGGCCGTCTAGTTTATTTCTGCAATTTCAG 27811 28 100.0 32 ............................ ATGCTCAACACTCAGTACAGCCCAATTTGAAA 27751 28 100.0 32 ............................ ACATGGGATGGTCGCACACTTAAACGTATTCG 27691 28 100.0 32 ............................ ACACTGGCCAATTTCATCAAGAGTACCAATTA 27631 28 100.0 32 ............................ AATTACCAATGGCATTAGAAAGCCCTCACTGT 27571 28 100.0 32 ............................ TCTGTACGTTGCAAGTGCATGTGTTTTTCGAC 27511 28 100.0 32 ............................ GTGTAGGATCACAGCATTTGCAGCTGAATTGG 27451 28 100.0 32 ............................ CAGTTCCTGAACCAGTATTTCCACCTGAATCA 27391 28 100.0 32 ............................ TGATCAATCTCAACTTGATGGACTTAATGGCG 27331 28 100.0 32 ............................ AGTTGAACCAGTTCCTCCATTGCCAGATGTAC 27271 28 100.0 32 ............................ TGCCCAACTGTTGTTTAAGCCTGCTGCATTCC 27211 28 100.0 32 ............................ CTACTGCTGAACCGTCTGCTGAGGATGAAAAG 27151 28 100.0 32 ............................ AAATGGATATTTATCCAATTGGAGAATTTATT 27091 28 100.0 32 ............................ GCCGTGAAAGGGCGATGCACCACATTGCCCTT 27031 28 100.0 32 ............................ TATTTTGGGGTGTTGGTTTATATCTTCAGTAT 26971 28 100.0 32 ............................ TTAACAATCATAGATGGTATCCAATACGGTCT 26911 28 100.0 32 ............................ TTTTTCTCAGGATCAGGCATAAGTAGGTCAAG 26851 28 100.0 32 ............................ GTAAGGAGTATTAGCTTTTAAGCTATCAGCAA 26791 28 100.0 32 ............................ TGGTATATCAGGATTTGGCATTTTTATAGAAT 26731 28 100.0 32 ............................ GAATCTGTGTTCAAATTTGTCGCGCTTCAATG 26671 28 100.0 32 ............................ ATGAGATAGTCCCCTATGGTTATAGTGATTTG 26611 28 100.0 32 ............................ CTGGTTATCCAAAACAGCCGTTAAACAGTTAT 26551 28 100.0 32 ............................ TTACAAGCCATACCAGTAAACGAAGTCGGTAA 26491 28 100.0 32 ............................ GTGTAATTGACCATGTTCAGTACAGTATTGAA 26431 28 100.0 32 ............................ AGATAGCCAATTGCTCATTACTTCGTAACTCC 26371 28 100.0 32 ............................ TTGTTGCTTCGATTCGATCTTCAACACCGAGA 26311 28 100.0 32 ............................ ATTCAAACCATTTGATACTTGATCATAGATCA 26251 28 100.0 32 ............................ AATTCAAGCGAATAACAACGATGAAGACTATT 26191 28 100.0 32 ............................ TTGTTGGGTATATCCCGTAAATGTGCCATCAC 26131 28 100.0 32 ............................ AACTGAAGATCTTGTCTTGGTTGAAAATTTTA 26071 28 100.0 32 ............................ AAACCCAAAGTCAATCCAATTCCAATTAAAAA 26011 28 100.0 32 ............................ ATCGTCATCGTGGATTTGATTTCTATATCATT 25951 28 100.0 32 ............................ TGACGTGTTTCAATCTGATCCGCATTGAGTTG 25891 28 100.0 32 ............................ TACGCGCGGGCTTGGTCGGGCGTCGAAGCTCC 25831 28 100.0 32 ............................ AATTCAAGCGAATAACAACGATGAAGACTATT 25771 28 100.0 32 ............................ TTATCGAAAAAGCTAACTTTATTAATGTACGC 25711 28 100.0 32 ............................ GTTTTGAACATCTTCAATACTGTACTGAACAT 25651 28 100.0 32 ............................ GCCTGATCTAGATTTGTATTTCTGCCGCCTAA 25591 28 100.0 32 ............................ AAAATCCAGAAGCATAGATTTTGCTAATAGTG 25531 28 100.0 32 ............................ TGTTCAGGTGAATAATCACTATAAAAACTTGG 25471 28 100.0 32 ............................ TCGTTAACTATATATCAGAATTATCGATTTTA 25411 28 100.0 32 ............................ TGCTAAACCAGTATTTATCTGAGAAACCTCAT 25351 28 100.0 32 ............................ ACTTGAGCACCAGGGCGATGTACGTGTAGAGA 25291 28 100.0 32 ............................ AGTTCAGCCAAAAGCTAAAGAGACTGATTTAA 25231 28 100.0 32 ............................ ACTCCAAAATAGCCTAAGCGGTTTTTTGAGCC 25171 28 100.0 32 ............................ CGTTGCTGCTATTTATGAAAATGCTTTGATCG 25111 28 100.0 32 ............................ CTGAAGCCATGATTGTTAGCATGTATTTACTA 25051 28 100.0 32 ............................ TGCCATCCGCCTGAATTTGCAGCATCTTGCTT 24991 28 100.0 32 ............................ GTTTAAAATAACTTGTTTTGAGCCGTTGTAAA 24931 28 100.0 32 ............................ TAAGTTGTAAGTAAAACTAACCAGTGCATCAA 24871 28 100.0 32 ............................ ACTGAAAAAGAGCATCAAGTAAGTGTGCTTGA 24811 28 100.0 32 ............................ CAAACTTAAGATTTGTTTTTTCAGTTAATATT 24751 28 100.0 32 ............................ TTTGCAAATTTTGCACCCGATGCGGCCGCACC 24691 28 100.0 32 ............................ ACTACCGATAGCAAGCGAATCAAAGTTAAAAA 24631 28 100.0 32 ............................ AGTGCTAAAAATAAGAGGGCAGTCGTAACCGG 24571 28 100.0 32 ............................ ATATCCCAAAATCACTTGGAATTTCTGCGCTA 24511 28 100.0 32 ............................ TTTACCCTGTTTATCATCACAGCGGAATCGAT 24451 28 100.0 32 ............................ ATATCCCAAAATCACTTGGAATTTCTGCGCTA 24391 28 100.0 32 ............................ TTTACCCTGTTTATCATCACAGCGGAATCGAT 24331 28 100.0 32 ............................ AATAGTGTAGCTGCTGATGAAAGATTGCTTCA 24271 28 100.0 32 ............................ TATCAAGTTAATTCAGGGTGTGAGGGTGTTAA 24211 28 100.0 32 ............................ CTCATGAAATTAGCTGTCGCCTCTAATTCTGA 24151 28 100.0 32 ............................ ATTATTAATTACCCCACTGTGAAGCCATAGCA 24091 28 100.0 32 ............................ AGCAACCTGCATGGCTGTATCAGAATCGACAC 24031 28 100.0 33 ............................ ACCTTTGCACCATCGAGCTTGAATACCGAAACC 23970 28 100.0 32 ............................ AAGATTTAAGGTGTATGTTTGTGATGTTGTTG 23910 28 100.0 32 ............................ ATCGCTAACAATTAAACGATAGAAAGCATAAA 23850 28 100.0 32 ............................ GATTCTTAATCGATTATCTCCCGATGATGCAG 23790 28 100.0 32 ............................ ATCGCCCAGCACACACCACACGATTGATTCAG 23730 28 100.0 32 ............................ ATAAATGATAATTTGGTTTAATCGCATATTTA 23670 28 100.0 32 ............................ CTCAAGCCCGTTGGTAACTTGAATGGTTTTGC 23610 28 96.4 32 ..........G................. AACGGCGATACAAATTTAAATGATAAATTGCG 23550 28 96.4 32 ..........G................. GCTGAAATTGTGCGTGATGAGATGGGTCAATG 23490 28 96.4 32 ..........G................. TACTCAAATGGTAAAACGCAAAGTGAACAAGC 23430 28 96.4 32 ..........G................. TACTCAAATGGTAAAACGCAAAGTGAACAAGC 23370 28 96.4 32 ..........G................. CCTCCAAGTCAAAGCCGTTATGCAGTTGTAGA 23310 28 96.4 32 ..........G................. TAATTGATTGCCCAAATCTAAGCTCTTTAGGG 23250 28 96.4 32 ..........G................. GACAATCTGTTAGAGATGAGCAACTTTGCATC 23190 28 96.4 32 ..........G................. TTGTTTAAATATCGCAGATATACAGACATTAC 23130 28 96.4 32 ..........G................. AGCAACATCTAAACCAGCATCTGATTTCAACG 23070 28 96.4 32 ..........G................. TGAAAGCTCTAAACGAAAATTTTCAGCCAAAT 23010 28 96.4 32 ..........G................. TAAAAAGAACGGGTTAAATGTTAGTATTAAGT 22950 28 96.4 32 ..........G................. AACATAAAGGGGAAAACACAAGCTCAATATCT 22890 28 96.4 32 ..........G................. TTTTTTCAATGATGGTGAATATATTTGCATTG 22830 28 96.4 32 ..........G................. AGTAGGGGGATTTATGGAAGTAGATATTAATG 22770 28 96.4 32 ..........G................. AGATAGATTTTATTGTTAAAAATCTGCTGAAA 22710 28 96.4 32 ..........G................. ATCAATCGAAGCGATTGTAATTTATGTTGATA 22650 28 100.0 32 ............................ ATAACAGTATCCAACCAAATCCTGATTTAAAC 22590 28 100.0 32 ............................ AACAGTTGAACCGATTAATGCAGCACCAACAC 22530 28 100.0 32 ............................ ATCTTTTGATTTCCTCTTTTTGTTGATTTCTA 22470 28 92.9 32 ...............A.T.......... AAAGATATTGTATGTCCGACATATCAGGCTTG 22410 27 96.4 0 ......................-..... | ========== ====== ====== ====== ============================ ================================= ================== 143 28 99.5 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : TAGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGATGGAGACCTTTGAACCTTATATCAATATGAAAAGTCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCCGATTTTTAACCCAATATTTTTCGTACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTGAAACTTTGGGTATTTCATACTTTTTAGGGATAAGGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : TACAAACGACTTGTAAGAGGTTAAGCGGATTGATTCACGAGAGTAGAATATGGAATTTAAACGATCGTAAAAATGAGTTAAAAAGAAATAATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTATGTTAATAAGATTATGCTGGTAAGTCAAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTATCAGCTTCTAATACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGATTTGGCTGTTCACCTGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAACAGATGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //