Array 1 180069-179039 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386494.1 Caldanaerobius polysaccharolyticus DSM 13641 CalpoDRAFT_CPK.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 180068 30 100.0 36 .............................. AATTTTCCCATTTGATCCAAAAATGCCTGTGCTTTT 180002 30 100.0 37 .............................. GGTGTACAACCTACAAAGCAACGTATAATTTCAAAAG 179935 30 100.0 37 .............................. TTAGTAAAGAACTAAAAAAGAAAGTGGAAGGTATACT 179868 30 100.0 36 .............................. GCTAGATACTTTGCTGTTGTAGCTGCCGTAGCCGCA 179802 30 100.0 37 .............................. TGAAAAATTTTAAAAAGGAGGAATGAAAAATGTTTAT 179735 30 100.0 36 .............................. GTAACAAAGAGAGAATGTGTGATATGTTTTGGTTTT 179669 30 100.0 38 .............................. ACCTGCTACAGCAGGGAAATAATGAGGAGGAATGAATA 179601 30 100.0 36 .............................. GCAAAACAGGTGTCCATTTTATCCCTCCTTTGCATT 179535 30 100.0 37 .............................. TTATAACTTTGTATTAAGTCTTCTTCACCGTTTTTTA 179468 30 100.0 35 .............................. TATTGAAAAAGTTTGATATGGCATTCCACACTGTC 179403 30 100.0 37 .............................. AAGTATTGTAAAATCCCCTTTATGAGTAATGAAAATA 179336 30 100.0 37 .............................. ACCTTAATTGTGGCAGGAAACTGAGATAACATTTGTA 179269 30 100.0 36 .............................. AGGAAGTTGGCGGAAACGTTGAAGAAGCTGTAACAC 179203 30 100.0 36 .............................. ACGGTTGTGATCACCTTGCCGCCCTGCCGTGCCTGT 179137 30 100.0 39 .............................. GGTAAGCTGATTAGCGAGGCGTGGCGGTAGCCCTGCCTC 179068 30 86.7 0 ..........A....C.........AG... | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 99.2 37 GTTTAAATCGGACCATTATGGAATTGAAAT # Left flank : GAGTGTTTAAGTAAGCTCAAACTAGAGGGACTATGCCTGCATGATTAAGATAAAACTCAACACCGGGCAACGAGAATATACAGGACAGGGTACAGGATGTGGCGCATAGTTAGTTATGGAATGCATATATCGTAGGTAAGTTTTAAGGACACATAAGACATTGGCGATGGGATTTCATGCGGGAGATATTAACCCCTCTTTCTGGAAATGGAGAGGTTGTGTAGACCGTATTTACGACAAGGTAGTTCCACTGTTAATGCTGCAGAAAGCTCATATATATTACTTTGTGTTTAGATGGGGAGGCTTTACGGGAGATCTAGAAACTAGTTAATTAGTTTAGCATGGGGTATTGACATAGTTACGTAAATATGATTAAATTATTCTAATACAGTTATTAAGTTTGTCAACTGTGGGGTATTTTTACATTACCTGAGGTTGACGAGAAATTTATACTATGAGAGGGTATTAAAAATCCTCATTTTATGCATGTTTTTTGCTGG # Right flank : GTTAGCGATACAAAGGGAAAATGTGAACCAGTGTAAAAAAAGCAAAAAAGAGAAATTAAAGGAAAATCGAGCGTGAAAAAGTTTATAGAATTTTTCAATCAGACAGTGACGTCTGAAAAGAAAAATAGAATATGCAACTGAAGCATGTTGATGTTAGCTCATGATTCTTACTTTTTGTATTTTTGTAGATCCTCTATGGGCCTATTCTATCATTTTTATCTGAAAGATAAATAATTCTGCATATTAATTTGATGTCGCATAAATCTTTTACAGCAGAATTATTTCTTTTTCTATATTACTGACATAAGCATCTGTGCTCTTTTCAATAAAGTTCAACACATCCTCAATTATATTATCGGTATAAACGTAATCACCGCCTACACAGGCGATTCCTAGCACAATTGATTGGTGCAGATCCTGATTTTCTATCTCTGCGACGGAGACATTAAATTTATTCCTTGCTTTATTTTCTAAGCTTTTTATAATCATCCTTTTTTCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATCGGACCATTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 462545-461195 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386494.1 Caldanaerobius polysaccharolyticus DSM 13641 CalpoDRAFT_CPK.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 462544 30 100.0 36 .............................. AGGGTTTTATAAATTTTATCAGAACAAACTGGAGTA 462478 30 100.0 37 .............................. CGGCAAAGATGGCCGCATACTTGAGTGGAAGACTTGG 462411 30 100.0 35 .............................. AGAGGCATTGCAAAAGAGAAGTCGCACAGACTACA 462346 30 100.0 34 .............................. TAGACGGAGTCAGTATTGCAGCATTGTTAATGCC 462282 30 100.0 36 .............................. AGGCGTACAGGCATGGGATATACTTGCAAAAGCAAT 462216 30 100.0 37 .............................. TGGCCAGTATATTTTGTTATACACAATTGTATTTGCA 462149 30 100.0 36 .............................. CTGATAGCTGGATATACGGTACCATCTATCTGGTGC 462083 30 100.0 36 .............................. AATGCTGTCATCTTTCCCTGCACACATCACCGTGCA 462017 30 100.0 36 .............................. GGGTCATACTCCCATTCGATTTCGTATACCTCGCAT 461951 30 100.0 36 .............................. AGATTGGAGAAACTGCTGAAACAAAGCAAGTGAAAG 461885 30 100.0 36 .............................. GTTTTTGGATCCTTTGGTATCAAGTCCTCTGGGATG 461819 30 100.0 35 .............................. ATAGGCTTGACATAAAACCTGCTGATAAACAAGAC 461754 30 100.0 36 .............................. CTTCACACAGCTTTTCGTATTCTTTTTTTGTTTTTG 461688 30 100.0 37 .............................. ATACGAATCTATACCAATCCCAGATCGCATCTCTTTG 461621 30 100.0 37 .............................. TCCTTACTTTTTTATCTGAGGCATATCGGCTATGCCT 461554 30 100.0 35 .............................. AATCTTCAAGCGTCTTACTCGGTGCGTCGTACCAG 461489 30 96.7 36 ....A......................... TTTTTGATCTATTAAATACAATTCTACATGACCCCG 461423 30 96.7 36 ....A......................... CTCTTCAAACAGGAGAATATAAAGGCACTCTGAAAA 461357 30 100.0 37 .............................. GCTAACAAACAATTTTCTAAAACGTATATAATCCATC 461290 30 96.7 36 .............................G TATCATCTTTATCTTCATCCGTCAAAGGTTCTCCAT 461224 30 93.3 0 A................G............ | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.2 36 GTTTTAATCGGACCATTATGGAATTGAAAT # Left flank : TCATGTAGTACAGAAGTTAGACAATGTCTTAATATCAATGATCATTTGTTTTATATCATCAGAGATAGCATGCGCAGGTTTACGGTTTTGATTTTTGCGAATAAGTGCCGCAGCTCCGCTTTCCCTCACTCCTTTTTTCAGGCGTATTACCTGGCGGACACTCAGGCCTAAAACCTCTGCTGCTTGTTTAACGGTCATACTGCCTTCAAGAGTTTTTGAAATGACAGTGTATCTTTTTAGTTGTTCTTGTGACATAAGATAACGCCCCTTGTTCTTCATAGTGATATTTTATCATAATAGTTAACAAGATGACATTATCACATAATAATCACAACGATGCAATTCATGGTGTTTACTTGATTGTACGAATGTGGTAAAATATAATTTAATAAATATTGAGTTTGTCAACGCCTGGAGCTTTTTGCATTATCTGAAGTTGACAAAAAATTTATACCAGGACAGGGTATTAGAAGTGCTGATTTTATGCGTGTTTTTTCTGG # Right flank : AATATTTATTTCTACCTTTCTCTTTTTGGGTGCGCTTTAATTGGACCATAGCACAATATATGGAATGATATTAATATTTTTGATAAAGCTTGTGCAAAGCAGTGAGGTACTTGGTGATAACAATAGAATTGGCCTACAAATACTTGATACAACACCCCTATGCAAAAACCCCTTGACATAACGTGTAAAGCTGTGGTATATTAATAAAGCCACACGGGGCGAAAGAAGAAGCCCCTTGACAAAAGGTCAAAAGGGTGGTAAGCTATAGAAGCGTCGCGAGGGAGCAAAAAAAAGCACTTGACAGGAAGCGGCGCAGGTGATAGAATAAGAAGCTGTCAGCCGAGAGGCTAACGGACCTTGCCAATTAAACAGTGAGCGGGATACAAATGTGTTAAGTGATAGAAAAGAGTTTACAAGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGGAGGTAGTGGAGCTTGCTCTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACCATTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 229893-229129 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386495.1 Caldanaerobius polysaccharolyticus DSM 13641 CalpoDRAFT_CPK.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 229892 30 100.0 36 .............................. TCCGAGCCATAAACAGGATACCAGGAATAAATATAA 229826 30 100.0 37 .............................. TGACTTGCTATCTTTTCAACGTCCATAACTTGTGCTG 229759 30 100.0 38 .............................. CAGCAAAACAAAAAAATAAAAAAGGAGTGTATAAAATG 229691 30 100.0 37 .............................. TTAAGAGGTTGGGACATAGATAAAGCGTTAAATGAAC 229624 30 100.0 35 .............................. ACATGCCAATGTCGTCAAACATAATGACTCCGTTT 229559 30 100.0 36 .............................. ACATGACAGCAGAGTTGAGAGGCGATAGTACCAGCA 229493 30 100.0 36 .............................. TCTCAACGATATGATGAACGGTACTAGCAGCCGTCA 229427 30 100.0 37 .............................. ATAATAACATTCACCCTATTACGCCTATTGAAGCTGA 229360 30 100.0 37 .............................. TCACTTCAAAAATGGATGGAGATGGCAGAGAAGGTGC 229293 30 100.0 38 .............................. TCAGAATATTGAAATATACACCGCCTTGAGAATTGAGC 229225 30 100.0 37 .............................. ATAAGCCAAAAAGCTGAAGATATAAAGAAAATAATAA 229158 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.7 37 GTTTTGAGTCTACCTATGAGGGATTGAAAC # Left flank : ATAATTAAAACAACGCACTGTTCTTTTAAGTATTCATTGGCCTTGGCAGTGAATAAAATCTGGCTATTGGATATTCTCCAGTAGCCTTTTGATATCTAACTGATGATCGCCTCGACTCTCAAATCCTAGGCGCCTGGTGCGCGTGATAAATAATTTCTCTTGTTATTATAATCGGTGCTTATCTAGAGAGTTATATAAGATGAGATGAGGCGAGGGAATACTTAATTGGTTTCTTAAGATTAGACTTGAGTACAGTGGGAAAATAGGAAATGCTGTGGGAGTAAAATTGGAGATGACATAATCATATAGATTTTAAGTTTTCAATGTCGTCGACCTGCGGTAGCGTAAAAACAGCGGGGGTTAGACGACACATTTTTTTATATCAAAAACCTTGATTTAAAAGAAAAATTATAATATCATTGAATTGCAAATGATAATTGGGATGTTTGATTATTATTATTGCGTTGGCGTAAAAATACCGCTTTAAGTGCTCTGTACGG # Right flank : ATATCTCGTTAAGTGTTTTTTAAAATGTTTTAGATAGTCTTACTTAGAAAATAAAAATACCGCTTTGACTTATTAAGTCTTAGCGGTATTAATCTGTATATAAAAAGTGAGCTGTATAGCCCACTTTTTATATCAAATGTATGATTGTTCTGATAACTTTTTGTACGTTTCATAACGCGCTCTGGCGTGCTTTTCTGCTTGCTCAAACAGCTGCTGAGCTATGTCGGGTGCTACATTCATAAGCGATGAGTAGCGTATTTCTCCTTGCAGGAAATCCTTAAATGACTGAGTAGGAGCCTTTGAATCCAGTATAAAGGGATTTTTGCCTTGCTTTTTGAGCTCAGGATTGTATCTGTACAGGTGCCAGTATCCGCTTTGTACGGCTTTTTTCTCTTCTGCTATGCTTGTACCCATACCCATCTTTATGCCATGATTTATGCAAGGCGCATAAGCGATGATAAGGGAAGGGCCTTTGTACTTCTCGGCTTCTGTAATGGCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGTCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 863340-864437 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386495.1 Caldanaerobius polysaccharolyticus DSM 13641 CalpoDRAFT_CPK.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 863340 30 100.0 37 .............................. TAACAAGCGGATTCAAGTTAGAAAGGGCTGGAGGTTA 863407 30 100.0 37 .............................. GTTTACAAGTATTTTATTAAAGTTCTACTATTAAAAA 863474 30 100.0 37 .............................. GCGCTTGGGGGCTGATACAAAATGACAATCAATGGCA 863541 30 100.0 38 .............................. TGTAATAGTCAGAAAATTCATACAATAAAATCCTCTTT 863609 30 100.0 35 .............................. GACTTGCCGATGATAGAAAAGCGAGGGCAAGGGAA 863674 30 100.0 35 .............................. GCACCCAGTACCAGTCGCCGTTTGGAGCCTGCCAT 863739 30 100.0 38 .............................. AGAATAGCCCTTAACATCTTCAAAAAGAATTACACTCA 863807 30 100.0 37 .............................. TCTTTTTTTGTGCACAAAAAATAGGCCCGAAGGGCCA 863874 30 100.0 42 .............................. CTGCATGATAAGCAGTTGTGATATATACTACATACGTGCCTG 863946 30 100.0 37 .............................. CTTGCCAGCCGCAAGCATCCCTCACGGCCAGCATATA 864013 30 100.0 36 .............................. TTAATTATGATGTTTATTATATCATCATATCCTGCT 864079 30 100.0 36 .............................. ATGAGAAGCAAAGCATGACCCTCTTTACCAAAAATA 864145 30 100.0 36 .............................. GGGAAGACGTATGCTTCGCCCACCCCGGCCACCTCT 864211 30 100.0 36 .............................. GAAGTAGCATACAACTCATTCAACCTCTGGAATGCA 864277 30 100.0 35 .............................. GCGATTTCCCCTGCTAAAAGAAGCTTTTTAACCAA 864342 30 96.7 36 ...............A.............. AAGCTTTCACCCAATCCCACGTTGTTGACGGTGAAG 864408 30 83.3 0 ....C..........T.GC..........G | ========== ====== ====== ====== ============================== ========================================== ================== 17 30 98.8 37 GTTTTAATCGGACCAGTATGGAATTGAAAT # Left flank : AGGACACAATTAGGGATTGATGAGTTTGTGATGCTAGAACCAAATCTTTTAGAGAGATGGTCTAATATACCGCCTGATGTTCATTTACTGTATGATCATTTGGAAGGCCTATTTAAGTGGATTGATAAAAATGCATGTGATGGAGATTATGTTCTGGTTCAAGGCGATTACGGGGCTACGTTTATGGTCGTAGATTATTGTATGGCCAGGGGGATAAAACCTGTTTATGCTACTACCCAGAGAAAGGTTAAAGAAGAAATATCAGGAGATAGCATTATTGCTACTAGGGAGTTTAGACATGTTATGTTCAGAGAATATAGACGACATGGTCAGTTAATTTGATTAAGGTATTTACAAAACTACGTAAATATGGTTAAATATAATTTAATGGATGTTTAGTTTGTCAACTCTCGAGCGTTTTTACATTATCTGAGGTTGACGAAAAATTTATACCATAGGAGGGTATCAAAAACCCTCATTTCATGCGTATTTTTTACTGG # Right flank : GCAGGTTACAATGAGCAGTATAACCATGCCGATCATTTCCAGTCGACAACAAACCCCATTTTTACACGCATAATAATTATTTCAGTTTAACCGATCTGGAATTGAAGGAATTTTATGTTCAATGTAGAATATAAATTTAGGATATATCAGTTAATGGAGGATAATATATGAAAAATATATTAATCTCTTTAATTGGGCGTGGGAGAAAACCAGATGGAGGTAAAGGATATATAAAAACGAGGTATAGTTTTGATAATGGTGAATATATAAGCGATGAAACGGCTTTTTTTGGTTCAGCATTGTATAGATACTTAGTAGGTAGAGGTTATGATATTGATAAGTGGATTATATTTGGTACTAATACTTCAACCTGGTCTGAAATTATTGAAGCAGTAAATAGCGTTCAACATGAAAGATTAGAAGAGATGTATTATAAAGTCTTAGATGAAGAAGAAAATGGGATAACTGATAAAACATTGAAGCAGTGGGAATGCAATATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACCAGTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 874266-878154 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386495.1 Caldanaerobius polysaccharolyticus DSM 13641 CalpoDRAFT_CPK.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 874266 30 100.0 37 .............................. ATATTTCCACCAGTTCCGCCTCCAAAGTTGCCTGTAT 874333 30 100.0 35 .............................. AAAAACGGTTCTACAATTTTTTCTTTTATGCTTTC 874398 30 100.0 38 .............................. ATGAAATTATGCGTACCCACCTAGAAGGTATAATAAAA 874466 30 100.0 37 .............................. GTAGAAAGTCTTAAAGATAAAATTGTAGAACCATTCT 874533 30 100.0 36 .............................. TAGACAAACCTCCAATTTATTAATATTAATGATATT 874599 30 100.0 37 .............................. ACGATTTGCTTACATTTTTTACATTTCAGGTAGACAC 874666 30 100.0 38 .............................. TACAAAATATCAATGCTTGTCTGATCTCTTTGCTCCAA 874734 30 100.0 36 .............................. AGAAAAAGTAGCTGCAACAATTGTCAATGCGATTTG 874800 30 100.0 36 .............................. AAAATTTTTACACGGTTTGTTGCGTTATTGTCGTTT 874866 30 100.0 37 .............................. TGAGCAACTAAATACATATGCTTGTTTGATATATCAA 874933 30 100.0 37 .............................. TGGAAATCCTGTTCTTTAATTTCCTCGTTTGATCTAA 875000 30 100.0 35 .............................. GAGTAATCTGTTTGCCTTCCAATTGGGACTTTGTA 875065 30 100.0 37 .............................. AGTGAAAACAGCCACAACAACAGTAGCAAGTACACTT 875132 30 100.0 37 .............................. GTAGTGATAAAACTTACATATGGTAATACATCTTTTA 875199 30 100.0 37 .............................. GGAGTATAAGAAACAGGGATATGGTGTGATAAAAGTA 875266 30 100.0 36 .............................. TTTAAGTCGTACCACATCTTTTCATATCTCATCTTC 875332 30 100.0 34 .............................. CTGATAGACTACGAAAACGGAAGAACGATACCGA 875396 30 100.0 36 .............................. CCTTGTAAATTATTACAAGATACCTATCTAACCCAA 875462 30 100.0 36 .............................. TTTAATAAATGTTTAATAAATATTTTTAATGCATCA 875528 30 100.0 36 .............................. CAATTTCTTCTATGTCAACATCATCATTCAACATAT 875594 30 100.0 37 .............................. AACATAGGAACAGAAACGTTCCTGTGTGTTGAAACGG 875661 30 100.0 36 .............................. GAATATTTAAGATGAGATAAAAAATCTTGTTGACAG 875727 30 100.0 36 .............................. ACTACCTTCTTCCTTGCTCTCTCCAGTATCCATGGA 875793 30 100.0 36 .............................. TGGTCAACTATATTGTGCCATCTGTTTTTCTCATGC 875859 30 100.0 36 .............................. ACAGGTTTTTGTATATTGTTAATTCATATACAGCTG 875925 30 100.0 36 .............................. GGATTAAGTTGGGATATATAAGTACCTAATATACTA 875991 30 100.0 38 .............................. AGTAGATGTGGAATTTGATATTAGGGATGATGCGACTA 876059 30 100.0 37 .............................. TGTTATAGCTAATAGAGTTGGATATTTAGATACTACT 876126 30 100.0 36 .............................. GAAACAAGACTTTCATCCATACGATAATACAAGCAA 876192 30 100.0 36 .............................. CAATAATAATCACCATCTATTTCAACAACATTATCT 876258 30 100.0 36 .............................. AAAGCTGATACAACGGCGACTGCGTATTTCCAGCAT 876324 30 100.0 35 .............................. ATATCCCTCCATTTTTATTAGTATATCAATATTTC 876389 30 100.0 37 .............................. GTTGCGTAGAAACTTATATCCGTTACATCGTAATCGT 876456 30 100.0 36 .............................. AGTTGTTGTATTTCCTTATTTAATTCTTCTTCATAT 876522 30 100.0 38 .............................. TTATGAAAATTAATATATAAATTCCCGTCTTCTAAATA 876590 30 100.0 35 .............................. GCAACGCAATCGAAAAAGCAGGTGCTTGCTGTGGC 876655 30 100.0 36 .............................. AAATTATCCACAAAACTTACTAGAGTACCAGGATTC 876721 30 100.0 38 .............................. AATTTAAGAAGGCAAAAATAAAAAGCTAAAGAATTTTT 876789 30 100.0 37 .............................. GAGCTGTAGGTAAAACATGCAATCTCAATCTAATATC 876856 30 100.0 36 .............................. TACAATAAATTTATTTTTTGATAATGATAAAGCGGG 876922 30 100.0 36 .............................. ACGTTACACGTGGAATGTGCATTTGAGCGATGACCC 876988 30 100.0 35 .............................. ATATTAGAATTATTTAATAAATATCCTTTAGACTG 877053 30 100.0 36 .............................. GATCGGCTACTTTTTCTCTTTCGACATACAAAATGC 877119 30 100.0 38 .............................. AAAAAACAAATTAAGGAAATACAAGAGAGATTGAATAG 877187 30 100.0 36 .............................. GAGTGATCGACGCTTACAGATGGAATACATTGTAAA 877253 30 100.0 38 .............................. GCTGTTGTCAGAGGCCCTTCTTTTGCTGGAGAATGTGG 877321 30 100.0 37 .............................. AGTGAAAACAGCCACAACAACAGTAGCAAGTACACTT 877388 30 100.0 37 .............................. GTAGTGATAAAACTTACATATGGTAATACATCTTTTA 877455 30 100.0 36 .............................. GAATATTTAAGATGAGATAAAAAATCTTGTTGACAG 877521 30 100.0 36 .............................. ACTACCTTCTTCCTTGCTCTCTCCAGTATCCATGGA 877587 30 100.0 38 .............................. ATGAAAAAAGGTTATATCAGAACTGCTTCAAAGGATGG 877655 30 100.0 36 .............................. ACATAATCTAATACTCTATAAAGTAATTCCATTCAT 877721 30 100.0 41 .............................. CTACAGTACGTTAATAAAAATCATGCGAGAGCAGGGAGCAA 877792 30 100.0 37 .............................. AGAGCAGAAAATAAAGTTTATAATTGGTTAAAAGAAA 877859 30 100.0 38 .............................. ATTATGACAAGACAATGACCCTCTTTGCCAAAAATACC 877927 30 100.0 37 .............................. GTTTTTCCCTAAAGATGCTTCACCTATCGATTTGAGT 877994 30 100.0 35 .............................. ATGCAAGGTGCAGGATACAGAAGGACTTCATCTAT 878059 30 96.7 36 .............................G AAACTATAACAGCCAAATTACCATAAGTTTACAAAT 878125 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 59 30 99.9 37 GTTTCAATCGGACCATTGTGGAATTGAAAT # Left flank : ACTGTAAGTTATCTCCACGAACCAGGCGAGAGGAGATTTTCTTTGAGTTTAGATATAAGTGAAGTTTTTAAGCCGATAATAGTGGATAGGGTTATATTTAAGTTAATAAATGAAGGCATGATAAGAGAGGAACACTTTGATAAAGATCTGAATATGTGCTATTTAAGCGATAAAGGTAGAGCCGTTTTTTTAAAAGAATATGATGAAAAATTAAATACTATAATCCACCATAAAGACTTAGATAGAAACGTTAGCTATAGAAGATTGATAAGGCTGGAATGTTATAAATTGATAAAGCATATTACAGACGTAAAGAAATATGAAGGGCTAAAAATTTGGTGGTAAAATATTGACACAAATATCTTATTTATGATAAACTGAAAAGTAATGGTCGTTAAAGATGTCAACGTCCAAGCTTTTTTACATCACCTGAGGTTGACGATAATTTTATACCATATGAGGGTATCAAAAACCCTCATATATAAACATTTTTTGCTGGG # Right flank : TAGTATAAAAGGTAGAGGGATTCATAAAGGTTTAAAAAGTTTCAATCGGACCATTTGACAAGGATTGGTGGTGGGTAATGAGCGCACTGGAACGCTTGACAGTTAATCTGTTCGCATAAAGAAACCACACTGAAAAACTGTGAACGAAGGACGTTTGATTAGGCTGTATAAGCCTTGTTTAAACAGCCTTGAAATTGTGAAACCGTTTTTACCACGGTTTTGTGGGGAAAAGGGGTCCCACAGGTTATTGGAGACTTGCCTTGAAGATGTATAGTAAGATTTTTGATCAGAGGAAATTTTACCCTGTGTTTGGATTTGCTGCTACGTGGCGTACACGTTGCAAAAGAAATGCGTTATTGTTATAATATTTAGTGATTAATTTTAAAGGACGGAGGTAAAAAATGAAACTAATAGACGACAAAGGAAAAATCTTTGGTATTATTAATTTAATCGACCTTATTGTAGCTTTACTAATAATATTAATTATAGGTGGACTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCGGACCATTGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //