Array 1 104519-104884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHQ010000012.1 Listeria seeligeri strain FSL W9-1318 NODE_12_length_114714_cov_65.616450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104519 36 100.0 30 .................................... TATTAGCGGTGGAAGAGGTTGACCGTGGGG 104585 36 100.0 30 .................................... AGTTGCGACTTCTTAAAGGTGAACCGTTGC 104651 36 100.0 30 .................................... TTCAGGATGTAATTGGTGCGCTTGAAATTC 104717 36 100.0 29 .................................... TAGTTGATGTTCTCACTATTGATGATAAT 104782 36 100.0 30 .................................... AGGATAAGCAGTTGCCGTACGAATTTAGTA 104848 36 80.6 0 A..........................A..AA.GTG | T [104859] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.8 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : GCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACGCCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTAATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATCCTTCTATTAACGTCCTTTGCGAACGTCCTTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : GCTTTAAAAGAATTACTTCATCGTTAATAGTGTTTCTACCAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGGTGGAGTTTATCAATTTTCAAATGATGATTGTTTTGATATAGCGGTTTAAATGTCACTTCCATTCCATGAGAGTTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTGCGATCATAGGAAAGTACATCCCGAGCATCGTCAAATAATTCTAAAATAGATTTCCTTAGCTGTCCGTTAAGGTAATTAAAATGTGAAATGTTATTTCGTTTTTCTTTCAATCGGTTATCAAAAAGTTCTAAGTACTCTAAGGTTAATCGTAATTGCTTAAGATCAACTTTTAACTGGGGATCATTTTTTGATGATACTTTTATAGAGGCATTTTTTAGATTATACAATTCGTAGTCGTTATATTTATATTTATTTTTATTTTCACTTA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 108252-109210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHQ010000012.1 Listeria seeligeri strain FSL W9-1318 NODE_12_length_114714_cov_65.616450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 108252 36 100.0 30 .................................... TCGGACACAACACAAAAAGCGAATGCCGTA 108318 36 100.0 30 .................................... AATGATTCTAACGCAAAAAGTAACAGCAAT 108384 36 100.0 30 .................................... GCACGAGCATGGTTGGACGGATACGAGGTA 108450 36 100.0 30 .................................... GATTCTCCGGATATTGGAAGATGACTTAGG 108516 36 100.0 30 .................................... TTATTCAAAAGTACTTAAAATTTAAAGGGG 108582 36 100.0 30 .................................... CCAATTTCGCTTAAAATATTATGTGCTCCT 108648 36 100.0 30 .................................... AAAATGGTGATAGGAGCAGTTGTGTGGGGA 108714 36 100.0 30 .................................... CGGAAATTGACCAATCAATCGAATCACAGT 108780 36 100.0 30 .................................... TGTTTTATGCAAGTGATCATTTAAATATCG 108846 36 100.0 30 .................................... ATATGCTATCAAAGGCGCATTTGAAGCGAC 108912 36 100.0 30 .................................... AGTTGAACTAAGTATTAAAGCGACTATTGA 108978 36 100.0 30 .................................... AGCTAGACCTTGCTATGATTGACAAGACAG 109044 36 100.0 30 .................................... GGTACAGAACTTCAAAGATCGCAACAAGTG 109110 36 97.2 30 ..................T................. AAATGCGTTAATCGGAACAGTAACAACGGA 109176 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.7 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : AAATGTCCCTTTCTGTTTTTTTAAGCTTTCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTCAGGACTATTTTCAGGGAAATAATATAAACTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAACTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTCCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGATTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTTGACCATGCTCGCACAGTTACTTGACACTTTTCATCTTCTAAGAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACCTTAACTACATTTTTAGAATCACTTGTTATTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 209059-209602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHQ010000003.1 Listeria seeligeri strain FSL W9-1318 NODE_3_length_298827_cov_90.388097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 209059 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 209125 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 209188 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 209252 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 209316 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 209382 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 209445 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 209509 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 209574 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 215824-217083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHQ010000003.1 Listeria seeligeri strain FSL W9-1318 NODE_3_length_298827_cov_90.388097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 215824 29 100.0 36 ............................. ATCTAAATGATCTTGACTGAAAAAAAATACCCTTCA 215889 29 100.0 36 ............................. TGACGAAATCTAGTGCCTGTCCTACCAGGTGATAAG 215954 29 100.0 37 ............................. ATCAACCTACTGTGGCGAAAATGAGACTTGCATCACG 216020 29 100.0 35 ............................. AGGTCGATGCCGAGCTTTGTAACAATGCCGAAGCG 216084 29 100.0 36 ............................. GATGATATATGAAAGCGACATACTCGCGGTCTTGCC 216149 29 100.0 35 ............................. ATGTTAGAATCTGTATTACTTAAAAGTTTAAGGCA 216213 29 100.0 37 ............................. CGATTTGATTTGATTTTGAGAAGTCGACACGAACATG 216279 29 100.0 35 ............................. AAAGCCGAGTAGGCTTATTTTTATGCAAAAAAATA 216343 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 216408 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 216474 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 216537 29 100.0 37 ............................. TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 216603 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 216671 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 216735 29 100.0 34 ............................. ACTTTTTAGGTTGCTCAACTAAATAATTAATTAA 216798 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 216861 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 216925 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 216990 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 217054 29 86.2 0 ........C....C..A...........G | T [217080] ========== ====== ====== ====== ============================= ======================================= ================== 20 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATAGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 226860-228699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHQ010000003.1 Listeria seeligeri strain FSL W9-1318 NODE_3_length_298827_cov_90.388097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 226860 29 100.0 37 ............................. ATCCATGTGGTTGATTGTTTGCAATCTTAAGTCCATC 226926 29 100.0 36 ............................. GTTACATGATGAAGCTGAGACAATGGAAGAGTATTG 226991 29 100.0 34 ............................. ATTTTCATCATCCCATCTGTTTTTGACATAAAAA 227054 29 100.0 35 ............................. ACAATTGCCAATTGCAAAACTCCTTTTAATATGTA 227118 29 100.0 36 ............................. ATTCCTACGAGAATAATGTATACTAGCGCGGTAAAC 227183 29 100.0 34 ............................. CATGCCGTACTCGTCAAGCATGCTGTTTGTATAC 227246 29 100.0 37 ............................. AATGAAATATACTTTCCGACTTCATCGCGCATAAGTC 227312 29 100.0 36 ............................. TTCTTCATCCCCATATACAACCATCTCTAACCCGTC 227377 29 100.0 36 ............................. ATGACCGCATTATCGTTGACAGAGACAAATGGAAGT 227442 29 100.0 36 ............................. ATAAAAATGGCATACAATAAAATTCTCGTACGGTAT 227507 29 100.0 34 ............................. TCCCACCAGACATCATTTTTTTAGATTCGCTATG 227570 29 100.0 36 ............................. TAAAATTACTAAGGGCGACCAGGCAGTTAGTAAGTA 227635 29 100.0 34 ............................. TTCTCATTTCGTTATATTCTGCTTCAACTTCTTC 227698 29 100.0 38 ............................. TTTACCTCGATTTCCAACTTTGTATCAAACGGAATATC 227765 29 100.0 34 ............................. ACACTGCCTTCAATTGTTGTACCGTCCAAAATCG 227828 29 100.0 35 ............................. ACAGTAAAAGGAATTGCAGAAAAATTCGGAGGTTT 227892 29 100.0 35 ............................. TGTCGAGTTGTTGCAAGGCATCTAGACTATCAATT 227956 29 100.0 37 ............................. CGAGAATCTTAGTTGTCGTGTTTGCGTATTGTTATCT 228022 29 100.0 35 ............................. GTTTCTGGGAAATATTCATCTAAGCCACCAGCGAG 228086 29 100.0 34 ............................. AAATTATAACTTTGTAATGCTAAATTTATATCTC 228149 29 100.0 36 ............................. CAGGTATAAATAGTAAGTTAGAGCTTACTAAAACCG 228214 29 100.0 36 ............................. AATAAAAAAACAGGTTTATTAGAACAAACGGATGAA 228279 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 228345 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 228412 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 228476 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 228541 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 228606 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 228671 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 29 29 98.2 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //