Array 1 255365-255910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIV010000001.1 Listeria marthii strain FSL W9-0752 NODE_1_length_918950_cov_67.283423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 255365 29 100.0 34 ............................. TTTTCCGAGCAATTGCGATTGTAGGTTGATTAAG 255428 29 100.0 35 ............................. GGGAATTTTTTTAATGATTTCAACGTACTCAATTC 255492 29 100.0 36 ............................. ACAATTCCGTCATTTTCGCCGTCACTGTCCCAGTCT 255557 29 96.6 35 .......A..................... TGCACCATGTATTGTGTTTCTTTTCGCGTATAGGC 255621 29 96.6 36 .......A..................... TTTTTTACATCTTTCTTTTTTAGCGTTAATAAATCA 255686 29 96.6 36 .......A..................... GTTTCAACAGCTTTTTTCTTTTCTTCATATAAGCTC 255751 29 96.6 35 .......A..................... GTCGCTAGGGCTAAAAAATGGATTGAGGAACAACA 255815 29 100.0 37 ............................. CCTTTATAATTATCACCAATATGCGCGAATGTCTCCA 255881 29 89.7 0 ..............A.A......A..... | A [255904] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 97.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAGTCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGTTTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGGAAGTTGGGAATGGTTGGGGTGAGAGGAGTTTGGTGGTTTTTGGTTTTCAAAACCATGTAGAGAAGGATGGATTTTCATTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGGAAAGTTAGCGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCTGACTCAACAAGATTCGAGTTTATTTTTATCCCCCTCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAATCTCCAACTACACCACACACCAAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAATCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 270842-272740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIV010000001.1 Listeria marthii strain FSL W9-0752 NODE_1_length_918950_cov_67.283423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 270842 29 100.0 36 ............................. TTCCGCGAATGTTGTTCGACTAACGCCGAGTTCAGC 270907 29 100.0 35 ............................. ACGAGATTCTTTTTTACTAATTCAATAGGGTATTT 270971 29 100.0 36 ............................. TCGTTTCATGAATTGCCTCATAACTTTTTCGTGCGT 271036 29 100.0 36 ............................. TTATAAAATACTAATACATTCTGGTGAATACGAACT 271101 29 100.0 36 ............................. TCGAAAGTGAAATATTAAAGTGTTCTGATATATCTT 271166 29 100.0 35 ............................. AATACAACAGTAGCGCGGGACTTAGTCGAAAGTTT 271230 29 100.0 34 ............................. AAACATCTCATAGGTGGTGTTTTAATAAGTTCCT 271293 29 100.0 36 ............................. TGGTGTTCGAATACCGCAATAACTTTTTCGTTATTT 271358 29 100.0 35 ............................. TTCGGCATTCTAATTTTCCCCACATTGGCTCTAAA 271422 29 100.0 35 ............................. AAAAGCGCAATCGCTTGCGCATCGTCTATATAATC 271486 29 100.0 38 ............................. ACATTATGTTGGTCCGCTTTCAAACGATGGTGGTTATG 271553 29 100.0 35 ............................. ACGGCACAACATTTATGGCAGATGTTTCCACTATT 271617 29 100.0 36 ............................. TCCTCAATGTCGCGAATTTTGAAGGGGTATGCCGTG 271682 29 100.0 35 ............................. CTGGATAATAACGGGCTAATTCTGGCAGCTTTTCC 271746 29 100.0 35 ............................. ATGTGTTTAAACAGGTTGGAGGAACAAATGTTACT 271810 29 100.0 35 ............................. ACGGTTGAATTTACTCCGTGCAGGTTGTCATTTTG 271874 29 100.0 36 ............................. GAGTACACTGCGTTATTGATTTTTTTCATGACCATC 271939 29 100.0 36 ............................. GAGGCATATGTCCGGACTGTAACCAGAACAACCGTC 272004 29 100.0 35 ............................. TTCACTGCTGTGTTTATTGATGCTTGTTCTGCTGA 272068 29 100.0 38 ............................. TCTTTCAAAGTTAGTTATACGCTGGCAACGATTTTAAA 272135 29 100.0 34 ............................. TTTTCAATCCGATAATATTTTGTCATTTGCCTTC 272198 29 100.0 35 ............................. ACATAATCAGTCCAAAGTAGATGCTTTTTTCACAC 272262 29 100.0 36 ............................. TTTGTCTTAGCTTCAATGTACTTAATGTTGGTCTTC 272327 29 100.0 34 ............................. GCAGCAAGCTTGTCATAAGAATAAGTGACTTCAC 272390 29 100.0 35 ............................. CAGTGCCAGGCATTGCGATGGAAAGGTACAACCTG 272454 29 100.0 36 ............................. TTGCCTACACAAAATGCTTTATAGATGTAGCAAAGC 272519 29 100.0 34 ............................. GTTAGGGTGATTAGGTCTGTATCTGTGTCATCTC 272582 29 100.0 36 ............................. TCAAGACCGGTGTTCACGTCTGTAGCACCTACACCC 272647 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 272711 29 86.2 0 ...............C......CA....C | C [272733] ========== ====== ====== ====== ============================= ====================================== ================== 30 29 99.5 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAAAAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCTATTCCAGCTCCAGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAATCCGTTATAAAGCCCTTGATTCGCAAATAGTGTCTGAACTTTCTTATTCGCAAGCAGCTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //