Array 1 294081-294628 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKG01000001.1 Listeria monocytogenes strain FSL L7-0213 NODE_1_length_1472463_cov_62.444542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 294081 29 100.0 36 ............................. CGAACAGCGCCGTCGCATATAATACCGTCTAGTTTG 294146 29 100.0 36 ............................. GCGTTTATGTCTACTCCTCGATGTAATTTCTCTTCC 294211 29 100.0 37 ............................. TTATAAACAACTAACGCATTACTTGCAATGTTGATAA 294277 29 100.0 35 ............................. TTTCTTGCGTGGTGTGATGTTCTAACCGCTGCATC 294341 29 100.0 35 ............................. TGCGTTACGTCGTCCAACATGCGACACAGTTCGCG 294405 29 96.6 36 ....A........................ GTGGTTTCAGAGGCTGTGGCTGATTGGTTTGAGGAA 294470 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 294535 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 294601 28 79.3 0 A.....A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCGGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGAATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAATTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 310233-312904 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKG01000001.1 Listeria monocytogenes strain FSL L7-0213 NODE_1_length_1472463_cov_62.444542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 310233 29 100.0 36 ............................. GATTTTAAATTTAATTATAACGCGCGACAGTATAAA 310298 29 100.0 36 ............................. TCACAAGAATCACAATCTATCACAGTTCAGTTGCCC 310363 29 100.0 35 ............................. CGGGTACAGAGGAAGACATAAATGTATTAACGAAT 310427 29 100.0 35 ............................. AGACAACTTTGTTCCAGGCTTGTACCATTTAATTT 310491 29 100.0 34 ............................. TTGCAATGTACGGTGTAATTTGTGCAGGACTCGG 310554 29 100.0 34 ............................. CCATGTACAGAATCAATTAGATTAGATACAAATC 310617 29 100.0 37 ............................. CTACTAAATTCAAAAATGGAGAGACGGAACTACTTTC 310683 29 100.0 34 ............................. TTAATATCGCTTGGATTTAAGCCGGTTACATCTT 310746 29 100.0 35 ............................. TAGTGTGTAATAATATGAACTAGCTCGTGATGGAT 310810 29 100.0 35 ............................. TACAGTGCAGAGATAACATTAATGAGATAATTTAA 310874 29 100.0 35 ............................. AGTCCTGAAATTTTAGCATTGATATCTTTAGCGAT 310938 29 100.0 35 ............................. GTTCCTACAGAACCAGCTAGCACTAAAGTCTGATC 311002 29 100.0 36 ............................. ATTAGAGCAAAGATAGAAGTAATTACAGTAATAAGC 311067 29 100.0 36 ............................. ATTATTAAAAAGATATTGTAATGATGTCACTGATCA 311132 29 100.0 36 ............................. TAAAGTAATCCTTAGCACGACCGGCTACTGCTTTAC 311197 29 100.0 37 ............................. AAGTTCATTAAAGAACTGGTTGGACAGAGTGAAATCA 311263 29 100.0 35 ............................. ACTTCTCGCCGCGGGTTTTCGGTTGCATTAGTATC 311327 29 100.0 34 ............................. ATCGCTTTTATATTTTTTGAACTTCGGCACCCAC 311390 29 100.0 35 ............................. CTGATTTTTTATGAATAAATACCAATCCCGACATC 311454 29 100.0 35 ............................. AAATATCGCTTCTTCTTTGCCATTTTTATTTCACC 311518 29 100.0 36 ............................. ATCATAATCGGAGTTAATAAAAGGGTTTGTCACCGC 311583 29 100.0 35 ............................. ATAATGAACACGCGTTCTCTGTTTTGTGGAACTCC 311647 29 100.0 37 ............................. AAATCTTTGCTGTTAAGAATTCGCCATTCCGCATCAT 311713 29 100.0 37 ............................. GAAATTGAAATGCCAAAACTCCCACATTTTAGTTTAG 311779 29 100.0 34 ............................. ATTGCTAAATTCTGCGAGTTCTGGAAAGTCTTTA 311842 29 100.0 35 ............................. TCAAGTAGGTAAGACTGTGTCATTACTTCGACTAA 311906 29 100.0 36 ............................. CAGATAACGGGCAAAGGACAAGTATATCTATTAAAC 311971 29 100.0 35 ............................. CATGTTAAGTCTGTTGTTTTTGATAAGTCAATACC 312035 29 100.0 35 ............................. GAAGGCATTTAAGTCACCCCTTTCGCCGCTTTGTA 312099 29 100.0 36 ............................. TGGTTCTAATATAAGAGGTTGTCCCGCCCATTTACC 312164 29 100.0 37 ............................. GAACACGCGCCAGAAAAATGGGCCAAATTCATCGAGT 312230 29 100.0 34 ............................. TATTCTCTTTTAGCTAGCTCTAGCTGCTGCTCTA 312293 29 96.6 34 ..........T.................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 312356 29 100.0 35 ............................. AGACCCCGCGCAACCTTCGTGTTGACTTCGATTTC 312420 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTTGTTATAAA 312486 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 312550 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 312616 29 100.0 35 ............................. ATTTATCACTGCGATTAAATCGGGGGATTTTCAAG 312680 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 312745 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 312810 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 312875 29 93.1 0 .......................A....C | C [312898] ========== ====== ====== ====== ============================= ===================================== ================== 42 29 99.8 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCATCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACATCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //