Array 1 14016-15762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABY01000005.1 Streptococcus equi subsp. zooepidemicus BHS5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 14016 26 80.8 40 ..TTTC.T.................. AGCAAGAAATACGGTTGTTATCAACGCGACTATTGTCTCG 14082 26 80.8 41 ..TTTC.T.................. TCTTAAGGTTATCGCACAGGTCGCATGGGCTTTTAGTCTCG 14149 26 80.8 39 ..TTTC.T.................. AAGATATCAAAGATATTAGTGTTGAATTGCGAGGTCTCG 14214 26 80.8 39 ..TTTC.T.................. TATGACTTAAATCGACTTTAATAATTTCGCTCAGTCTCG 14279 26 100.0 40 .......................... CGCTATGGGAAACCTATTTTTGACCCTCCTATCAGTCTCG 14345 26 100.0 40 .......................... AAAAAATAGTGGATAAACTCAATAAGATGGACTAGTCTCG 14411 26 100.0 41 .......................... ACCTGCAGTTTTATTTTCTTTGGCTGCTAGCTTAAGTCTCG 14478 26 100.0 40 .......................... ACAATATATTCGTGGTGAGTATCTCCGTTTTCGTGTCTCG 14544 26 100.0 40 .......................... TCCTCTTGTAATCTTAAACTCAAAGGCTTTTTTGGTCTCG 14610 26 100.0 42 .......................... TTGTAATTTAGCGCTAGGAACAGCAGAGCCTAAAACGTCTCG 14678 26 100.0 39 .......................... ACGAGGATAATATGCCGATTGATGTTGTTAACCGTCTCG 14743 26 100.0 41 .......................... TCGCCCAGTTAGCTAAATTTTCAGCTTGCTGACGCGTCTCG 14810 26 100.0 40 .......................... TTGATAATACTATATTATCATGGCGATTAGTATTGTCTCG 14876 26 100.0 40 .......................... TTTAACGCCTGCGGATAAAGGCATAATAAAAAAAGTCTCG 14942 26 100.0 40 .......................... TCTAAGCGACTGCTTTTTACTATCCAATAGAAAGGTCTCG 15008 26 100.0 41 .......................... AGTGCCTCAAAAGACTTTTTTACAACATCACTAACGTCTCG 15075 26 100.0 41 .......................... AAACGCCGCTTTGATGTTGAGCAAAATGTGTATATGTCTCG 15142 26 100.0 39 .......................... TTATCGTTGAAAGTGGATAAACCGGGTATCAACGTCTCG 15207 26 100.0 40 .......................... ATGATAAGCTTACCTTTAGCTAAAGCTTGCGGAGGTCTCG 15273 26 100.0 40 .......................... ATTTCTTACCTCATACTCTGGAAAATCTTCATTGGTCTCG 15339 26 100.0 39 .......................... TAAGGTGCAGTATTATATGAACAACTTTGTTTAGTCTCG 15404 26 100.0 41 .......................... AGACTTTGCTTTATGGTCAAGATTTACAAAAGACAGTCTCG 15471 26 100.0 41 .......................... TTGCTGATGCTGCTAAGAAAGGCGCTGAATTTATTGTCTCG 15538 26 100.0 41 .......................... CTGCTTAAAATGGCTATTATCGATCGCATTTGTGGGTCTCG 15605 26 100.0 40 .......................... TTTATTGCATTTTGCCTGAAGGCTACTCAAACTAGTCTCG 15671 26 96.2 40 ........A................. AATTCGATTACTACTTGGATCAATCGCTAGTATCGTCTCG 15737 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================== ================== 27 26 97.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGACATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTGAGATGAGGCAAAGCGTCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGGAGTCATTGGTACA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //