Array 1 426943-427947 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGC01000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_2170 NODE_1_length_554171_cov_4.10966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 426943 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 427004 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 427065 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 427126 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 427187 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 427248 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 427309 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 427370 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 427431 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 427492 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 427553 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 427614 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 427675 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 427736 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 427797 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 427859 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 427920 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444216-446136 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGC01000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_2170 NODE_1_length_554171_cov_4.10966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 444216 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 444277 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 444338 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 444399 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 444460 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 444521 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 444582 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 444643 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 444704 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 444765 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 444826 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 444887 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 444948 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 445009 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 445070 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 445131 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 445192 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 445253 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 445314 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 445375 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 445436 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 445497 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 445558 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 445619 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 445680 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 445741 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 445802 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 445863 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 445924 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 445985 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 446046 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 446107 29 96.6 0 A............................ | A [446133] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //