Array 1 2584577-2582941 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024463.1 Arachnia rubra strain SK-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2584576 36 94.4 37 .TT................................. CTCACCGCATACTCATACAGCTCCTGATCATCGAAGC 2584503 36 97.2 36 C................................... ATCAATCCTGGCAGGCGGGGTGGTTCTCTTCATCGC 2584431 36 100.0 36 .................................... CACGTCCTCCGGTTCATGCCCCGGCCGCAGATACCT 2584359 36 100.0 38 .................................... AAGATAGCCCCTTTGTTGATCAGCCACGCGAGGAGCAT 2584285 36 100.0 38 .................................... CAGGCACCCACGACCTCGCCAACCTGCATCAGCGGCCT 2584211 36 100.0 34 .................................... TCGAAATCACCGCCAGCCACATCTGGTACATCCG 2584141 36 100.0 37 .................................... TGGTCACGCCACACATCAACCGCCACTGACCAGCCCT 2584068 36 100.0 34 .................................... TCGAAATCACCGCCAGCCACATCTGGTACATCCG 2583998 36 100.0 36 .................................... GATCAACTCGATGTCACCGACCTGGGACGCGGCCGT 2583926 36 100.0 37 .................................... CCATCGAAGTCCAAACCTACTTCGTCCAGGATCCTCG 2583853 36 100.0 36 .................................... GGCCCTCACCGAAGAGGTGGTGACCGAGGCCATCCA 2583781 36 100.0 38 .................................... TCCCGTCCGACCGAGTCCTCCAGCCAGAGTGTCCAGTC 2583707 36 100.0 38 .................................... TCCCGTCCGACCGAGTCCTCCAGCCAGAGTGTCCAGTC 2583633 36 100.0 37 .................................... GAGCCGCAGCATGCCATTCCTTCGCGTTACCGAAATG 2583560 36 100.0 36 .................................... GGACGATCCATCCTCGTCCACGGCAAAGGCGGACAC 2583488 36 100.0 37 .................................... TCGCCAGCATCCGCCGTCAGCAACACCGACTCGTCTC 2583415 36 100.0 38 .................................... CAGAGCTGGCTACCTACCTCGCCAAGTTGCAGAGCCAA 2583341 36 100.0 36 .................................... GCGGCCCGAGGTATCTCCAGGAGTCGGTCCCGATGG 2583269 36 100.0 39 .................................... GGCCAGCCACCCCACTTGACTAGCAAACCTTGTTTACGT 2583194 36 100.0 38 .................................... CCGACCTCCTCCAGGGGGAGTTCTCGTGGGTGTGCGAT 2583120 36 100.0 36 .................................... CTACAACGTCAATGCCGAAGTCGAGCGTGTCCTGCT 2583048 36 100.0 36 .................................... CGGCAGCAACTCCCCGCTATGGTCGCGCAAGACCCG 2582976 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.6 37 GCCGCAATGGAGCCCAGCTTTTGGAGCTGGGAAAAG # Left flank : CCCTGCCGGGTAGTGTGCATGATGCAAAGGCCATCAAGGAATCCGGCTTCCTCGCAGCCCTCGACAGTCAAAGTCATATTGGAGACAAAGGCTACATCGGATTGGGGATGATCACCCCCGCGAAGAAACCCGCCCATGGTGAACTCACCGACAGCGACAAAAGAAACAACACGACCATCAACCGCGTCCGCTACCTCATCGAACGTGTCATCGCGAACGTCAAAACCTGGCGTGTTCTACACACCGATTACCGCCGCCCCTACAACACCTTCGAAACCACAATACAAGCCGTCACAGGACTCATCTTCGCCTACAGTCTATGAATAAGCCTCCTAATATATGCTGATCTGGGAAGATTCATGTCCAAGATTCGATATTAAGTTAGAGTCGATGTTCAATTTTTGAGAATGCTGAACGGGGAATATATAAAACCCTCAACGGGTCCAGCTTTTATAGTTTAAAAAGATAGCCGATTGATTTATTTAGCGACAAATAAAATA # Right flank : AGCTCGCGATTTTTTCACCAACTGACTACCAGTGTTGCACATCTCTGCGAGCAGCGGAAGTTCTGGGGCAGACGAGTCGGGTTGTTGCTCCCTGACAGGCTTGGGAAACTCGCGTTGACTAGGGCGCGAGCGCTCCCCAGGGGGACGGAGGGCGCTGGAGCGCTCGCTAGACGATCTGCGGGCCTCGGGTGGGTAGCTCCTCGCGGGCTCCAACGAATATGAACCTGTCCTCACCGATCTCTCCTAAATCAACAATCACCACCGAGTCTACTGCTAGGTTCATAATTTCTTCTCCGGCTGATCTTAGATGGATCAGTTCTGACTTGTTGAGGTCGCAGATGAAGACGGAGTATTGGAGTCGTTCTCCGTGGGCTTCCATCAGTTTGCAGATTTGTCTGAGTCGTCCAGGATTACGGATGTCATAAGCCACTAGATAACGACGCCGTTGTGTTTTCATCGAGTCACCATCGCCGTGTATTGTTCGATTTCCTTGGTGAGGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCAGCTTTTGGAGCTGGGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.30,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 2829192-2828937 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024463.1 Arachnia rubra strain SK-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2829191 37 100.0 34 ..................................... AAGGGATGAGTGACAGGAGGGTGTCGGCGGCGTA 2829120 37 100.0 36 ..................................... CGTCGAACACGCGTGCGAATATCCGGTCGCCGCCAC 2829047 37 100.0 37 ..................................... GGACGGGGCCGTCATGGTGCCACTCCGGCCACACCGG 2828973 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 36 ATTGTTCCGGCCTCTTAGGCCGGACTCCATTGAGACC # Left flank : ACAGCTCGGGACGGTCGTGCCACGACCAGCAGGACACCAGAGTACCGTCGATGATGTACTGACGGTCCGGGTCGAGGTCCCCCACACTGGGCACCCAGTTCTGGAGGGCTTCGGCGATCAGGGGAGTGTAGACCGCCACCACTCGTGAGATGGTGGCTTGGGAGACTGTGTGGATGTCGGCCAGCAACTCCTGGGTGAGATTGTGCCGCAATATCAACACAGTGACCTGGATACAGCGGAACAAGCCCAGGACACGGGACCCTGCCGGGGGAAGGTTTCCGGAACGGGATGTGTGGATCAGTTCGCACAGGTTGAGGATCTGGTCACGGTCAAGGCTTGTGGTAGTATTCACGGCGGCGGCTTGTCTTTCATCTGAGGGTTTTCTTTCTGCATTTTGAATTATCTCAGATCGGGCAAGCCGCCCTCACATCCCCCTCGGGTAAAGTGTTAGCTGGGGAAAGCCAAAACACCCCTATGAATAAGCCTCCTGGTCTCCAATC # Right flank : AGGCTGCTCGGGCTGTGGCGGAGCGGTCCACGGAGGCATTGTTCCGGCCTCTTATAGCTCTCTTTAATCAAAATCCGATGTCTGTGGGGTATTCGGGTCGGCCGGGGGAATCGGGTTTCCCGGGTGGATGTGGTGGATATCCCGTCGGGTGTGTAATATCCTTGATGCGTGAAAACAGTTGAGATATCTCCAGAGGAATTCCGGATCCTCCAAGACTACAAACACGAGGGTCCCCACAAACTCATGAAAGGAAAAGCCGAAGCGATCCTACTGCTGTCACGAAACGTGGACATCGGGGTTGTGGCAGAACTCGCAGAACGCACCACCGCAACCATCAAAACCTGGCTACAGGACTGGCATGAAACCCGACTCGCGTCAATACACACCGGCCATGCTGGCAACCTCAACGCCTCCAAACTCACCCCCCAGCAGCGGGCAGAAACCATCGAGGTGCTGCAACAACCACCCGGCCAGCTGGGTCTACCCGCCGAGTTCTGGAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTTCCGGCCTCTTAGGCCGGACTCCATTGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.40,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 2830140-2830969 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024463.1 Arachnia rubra strain SK-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2830140 36 100.0 36 .................................... TCGCGATCAGCAGGCGACGTTCTATTACTCGTTGTT 2830212 36 100.0 35 .................................... GGTAGTTCATGGGTGATTTTGGACCCCGGCATACG 2830283 36 100.0 37 .................................... CACCCTCACCCGTGCTCAAGAGATGCTCACCGACCTC 2830356 36 100.0 37 .................................... TCCAAGGATGGCCGCCACCGCCCCGGGAAGTAGGCCA 2830429 36 100.0 38 .................................... GGACAAAACTCTGGCTTGTGTACCGGCTCTACCGCAAT 2830503 36 100.0 35 .................................... TCGAAACCCAACTCGTGGTCCCCAACGTGCACCAG 2830574 36 100.0 36 .................................... CGGCTAGACCGGGGGGAGAACCGACAGTGAAAAGCA 2830646 36 100.0 34 .................................... CTGACCCTGGAATGACTTGGGCTGAGATCTCCTC 2830716 36 100.0 36 .................................... CGCAGCATCCCGAGCCACATGCGATTCTGTTTCTTC 2830788 36 100.0 37 .................................... CTGCCCAGCTGGCCGGCCAGCTGGGGATCAGGGATGA 2830861 36 100.0 37 .................................... GTCCCTTGATCGTTCCTGCCACGTCGAACGCTAGTAA 2830934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 100.0 36 GTCTCAATGGAGTCCGGCCTAAGAGGCCGGAACAAT # Left flank : ATCGACGGTACTCTGGTGTCCTGCTGGTCGTGGCACGACCGTCCCGAGCTGTACTCAGGCAAGCACCACACGACGGGGGTGAACCTGCAAGTGGCCTGCACCCTGGCCGGACAGCTCGCCTGGATCTCCCCGCCCCTGCCGGGTAGTGTGCATGATGCAAAGGCCATCAAGGAATCCGGCTTCCTCGCAGCCCTCGACAGTCAAAGTCATATTGGAGACAAAGGCTACATCGGATTGGGGATGATCACCCCCGCGAAGAAACCCGCCCATGGTGAACTCACCGACAGCGACAAAAGAAACAACACGACCATCAACCGCGTCCGCTACCTCATCGAACGTGTCATCGCGAACGTCAAAACCTGGCGTGTTCTACACACCGATTACCGCCGCCCCTACAACACCTTCGAAACCACAATACAAGCCGTCACAGGACTCATCTTCGCCTACAGTCTATGAATAAGCCTCATGGTGACCAAAGCCGTCTTGGGCGCGAAAAACCT # Right flank : TAGCTCGCCTCGGAAGGCCACCTTGACTAAGGACTTTACCAGCACCTGCGAGCTCTCCGCACCGCCGGGTCCCATAAAACCACTCTGTTGAGTTGTCATGGGGTAAAACACCTAGTCAAACCCCTTCGAGCGCTCCCCGGGGGAGACGACATGACCGGAGGTCTCGCAGCGGCTCACACCACCACGGGCCCCTCATCGGGCAACCTACGCGGTACCCCAAGCATACTGATGTCTGCGTCTTGCGGGGCGCCGAGGTCGATCACCACCACCGAATCGTAGGCGAGTGCGATCACATCACGAATGTCCCGTTCCCACATTGCGAGTTCAGCCTTGCTCAGGTCACACACGAACACCGAGTACTGGAGCCACTTCCCGTAGCCCTTCATGAGGTTGAAGGTGGCTCGCAACCGCTTGGGATCCGATATGTCATAGGAAATGAGATATCTTCGTCGGGCCATGGGTCACCTCGTCATCAATGGGGTGTAGGAATCCAGTTCTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGGAGTCCGGCCTAAGAGGCCGGAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.40,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //