Array 1 316814-318367 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPQ01000046.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SALI-436-3 NODE_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316814 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316875 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316936 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316997 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317058 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 317119 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 317180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 317241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317424 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317485 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317546 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317607 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317668 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317729 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317790 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317852 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317913 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317974 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318035 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 318096 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 318157 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318218 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318279 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318340 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334500-335976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPQ01000046.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SALI-436-3 NODE_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 334500 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334561 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334623 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334684 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334745 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334806 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334867 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334928 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334989 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 335050 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 335111 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 335172 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 335233 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 335295 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 335398 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335459 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335520 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335581 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335642 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335703 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335764 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335825 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335886 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335947 29 96.6 0 A............................ | A [335973] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //