Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXX010000017.1 Erwinia amylovora strain 1280 Ea_1280_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31705-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXX010000017.1 Erwinia amylovora strain 1280 Ea_1280_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31704 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 31643 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31582 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31521 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31460 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31399 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31338 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31277 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31216 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31155 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 31094 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 31033 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 30972 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 30911 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 30850 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 30789 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30728 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30667 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30606 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30544 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30483 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30422 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30361 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30300 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30239 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30178 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30117 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30056 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29995 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29934 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29873 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29812 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29750 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29689 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29628 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29567 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29506 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29445 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 44830-40744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXX010000017.1 Erwinia amylovora strain 1280 Ea_1280_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 44829 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 44768 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 44707 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 44646 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 44585 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 44524 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 44463 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 44402 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 44341 29 100.0 32 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACGC 44280 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 44219 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 44158 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 44097 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 44036 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 43975 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 43914 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 43853 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 43792 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 43731 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 43670 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 43609 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 43548 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 43487 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 43426 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 43365 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 43304 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 43243 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 43182 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 43121 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 43060 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 42999 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 42938 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 42877 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 42816 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 42755 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 42694 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 42633 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 42572 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 42511 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 42450 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 42389 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 42328 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 42267 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 42206 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 42145 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 42084 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 42023 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 41962 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 41901 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 41840 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 41779 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 41718 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 41657 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 41596 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 41535 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 41474 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 41413 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 41352 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 41291 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 41199 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 41138 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41077 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 41016 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 40955 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 40894 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 40833 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 40772 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 67 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GCCGGGTGTTCCCCGCGTGAGCGGGGATAAACCGGTGTTCCGCCTGGCTGGGAGAATGTGGATGGCGTGTTCCCCGCGTGAGCGGGGATAAACCGCTGAAAATGAGTGGTGGGCAGCCGGGAGTTAGGTGTTCCCCGCGTGAGCGGGGATAAACCGAACTTACGGTGGCCTGGCTTGAACTTCCGGACGTGTTCCCCGCGTGAGCGGGGATAAACCGCCGGGCGAATGCGGGGATTGCAGGGGCAATGGGTGTTCCCCGCGTGAGCGGGGATAAACCGGTATTTATAAACGATTCATTAATACGCTTATAGTGTTCCCCGCGTGAGCGGGGATAAACCGCAGCAACCGGTGGTATTTTTCCGGGTCGGTTAGTGTTCCCCGCGTGAGCGGGGATAAACCCATTACTGGTAGTAACTCAGCAGTATTCGGTACGTGTTCCCCGCGTGAGCNNTGAGCGGGGATAAACCGGGCACCGCCAATCTTCTGGCCCCAGTGATTAT # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //