Array 1 18369-18137 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQW01000011.1 Bacillus pumilus strain LNXM70 NODE_11_length_99390_cov_53.9021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18368 32 100.0 35 ................................ TTTACAAATCCTTGGATACCAAAGACAACAATTTC 18301 32 96.9 36 ...................T............ GATCTCCTCGATCTTGGCTTGATACGTTGGATTGTT 18233 32 100.0 33 ................................ GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 18168 32 71.9 0 .........A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 92.2 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AACCACTGCTGAGTCTTTGGACTGGAGAGTTGGCAATAATATTGTTGGATGTCGCACTCTATATGAGTATGTGGATTGAAATTCCTTTATAAATTCCCACTGAGTAATAAATTTAGTCGCACTCTACATGAGTGCGTGAATTGAAATACGACTGTAAGCCCATATTTCTTTGTAATCTCTAGTCGCACTCTATGTGAGTGCGTGGATTAATAATTACGAAAAACATAACTCAGCCTCTCAGTAGTAATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAATTCGGTGCGAATGAGAGGTGAACATAAAATCTCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCGAATTACATAAATTCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAGTGCCCTTTGCTGCGATAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGGAAGGCTGAAATATTTTCGTCTTGCTTGGCAATTTTCATAATCTCTGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTTCAATTTCATCGAATTGTGCACGCA # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27463-27232 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQW01000011.1 Bacillus pumilus strain LNXM70 NODE_11_length_99390_cov_53.9021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27462 32 96.9 34 .............A.................. AATAGAATATGAGGAAATGCCCTCAATTCATTAT 27396 32 100.0 34 ................................ CACAATTCAAGGTTTACTTGAGCGTTTTTATCTG 27330 32 96.9 35 ............C................... TCACGTTGTAAATAAGTTTATGTATTGTACTCGCT 27263 32 84.4 0 ............C........C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTTGTGCCTGTCAAATATGCGAATGTAGTCGCACTCTACATGAGTGCGTGGATTGAAATGCCGGCTCCATAAACTCATATGAATCAATGTCCTTGTCGTACTCTACAAGAGTGCGTGGATTGAAATATTGACGCTTTACTTTCATATAGGCTGTCATAGTCGTCGTACTCTACAAGAGTGCATGGATTGGGCAGCATCATAGACCAAGTAACCCCCGGACTGGCTCAGTAGTCCATATTTTTAAATAAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGAATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGAGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATCTGATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTCGACTATTATTTCCTAAAAAATGTTACAATTTGGGCGGAGATCGCA # Right flank : GATTGTGTCTTAAACGGGTATGCCACCTAAAAGACCATCTTCTTACAACATCCTCTTTCAGATACAAAAGCCATCAAAATATACTGTTCATTTGTATAGTGAAAACATGACTTTTTGCAGTCATGTTTTTTTCTTCTTTTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGCTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGA # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28267-27770 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVQW01000011.1 Bacillus pumilus strain LNXM70 NODE_11_length_99390_cov_53.9021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28266 32 100.0 33 ................................ TGGATCAATCGCTTTACCGTTTTTCTCAATCTG 28201 32 100.0 36 ................................ GTTAGCAACTTTACTATTAGTATCAACGTTGTTGCC 28133 32 100.0 35 ................................ CATCCGATCTACTGATGTAGGTGGAAAAGCGTTTT 28066 32 100.0 33 ................................ ATTGAGGATCATGGTGATGAATACGGAATAGAA 28001 32 100.0 34 ................................ TCCTATTCTTGTGCCTGTCAAATATGCGAATGTA 27935 32 100.0 35 ................................ GCCGGCTCCATAAACTCATATGAATCAATGTCCTT 27868 32 93.8 35 ....T........A.................. ATTGACGCTTTACTTTCATATAGGCTGTCATAGTC 27801 32 78.1 0 ....T........A......A.......GGCA | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 96.5 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGGCCGGCTAGGCGAAACGAGACAAAACATCTCAAACATACACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGAAGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGACGGTGCGAATGTGAGGTGAACATAAAATCCCCGTGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GCATCATAGACCAAGTAACCCCCGGACTGGCTCAGTAGTCCATATTTTTAAATAAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGAATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGAGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATCTGATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTCGACTATTATTTCCTAAAAAATGTTACAATTTGGGCGGAGATCGCAGTCGCACTCTACAAGAGTGCGTGGATTGAAATAATAGAATATGAGGAAATGCCCTCAATTCATTATGTCGCACTCTACATGAGTGCGTGGATTGAAATCACAATTCAAGGTTTACTTGAGCGTTTTTATCTGGTCGCACTCTACCTGAGTGCGTGGATTGAAATTCACGTTGTAAATAAGTTTATGTATTGTA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //