Array 1 804843-801640 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNQ01000001.1 Cronobacter dublinensis strain cro3214W contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 804842 29 100.0 32 ............................. CGCTGGTATCAGTAGTTTTATTACCCTTACTC 804781 29 100.0 32 ............................. CCGCTCTGGACTTTGGCGACAAATGGCAAGAA 804720 29 100.0 32 ............................. CACTATCGCAGGTTACCACTCTGGCACGTAAA 804659 29 100.0 32 ............................. CCCTGACGCCCTTCCTCAATGGCTTCCAGTAT 804598 29 100.0 32 ............................. GCGCTCAATACGCTCACAGTTACCACCTGTCC 804537 29 100.0 32 ............................. ATCTCGCAGAAAGGGTAAAAAAAATGGCTGAA 804476 29 100.0 32 ............................. GCGTCCCTCGGTTGTAGGAATTGGTGCGGGCA 804415 29 100.0 32 ............................. GATTTGAGGACACCAGAGACCAAATCGACCGG 804354 29 100.0 32 ............................. GTGACCTCGTTGGAATCAGATAGCTTAGCTAT 804293 29 100.0 32 ............................. GAAAACGGGAATGAGTGCAGGGTACTCTACAC 804232 29 100.0 32 ............................. CAGGATTGTGGCGAGAAGAAACCAGTCAGTGA 804171 29 100.0 32 ............................. GTGAGAGTTTAGGCATCAGTCGTCATCATCAG 804110 29 100.0 32 ............................. GCCACAACTGCGCCATCGATTACTGCGCTGAA 804049 29 100.0 32 ............................. CGAGCCTGAAATATTTGGAGTGATTTGTTTGT 803988 29 100.0 32 ............................. CGTTTAATCTGTGTTTTTTTGTTAATTCTTGG 803927 29 100.0 32 ............................. GCGGATCTAAATAAAATAACGTATCTGGCCTG 803866 29 100.0 32 ............................. GGCACTGGCTGAACGTGTCGGAATGTCGGCCG 803805 29 100.0 32 ............................. TCGACGCAGGTCGCCCGCGCGCTGCGCCAGCG 803744 29 100.0 32 ............................. TTTCGTTCAAACAAATCGGTGTCGCGCTGGCC 803683 29 100.0 32 ............................. GCCTTCATATCCAGACTGTCAACGTTGATTCC 803622 29 100.0 32 ............................. GTGTAACCGGCGCGGCGCGGAACTCTTCCGCG 803561 29 100.0 32 ............................. CAAACTCTGCTGCTAACTATCTGGCTAAAGCG 803500 29 100.0 32 ............................. TGCACATAGAATGTTCACGAAAAACGTTTACA 803439 29 100.0 32 ............................. CGATGCGCCAGAATTTACACATCGTCAACGCT 803378 29 100.0 32 ............................. ACACGATCACTACAGCTAACGCGATTGCGGAA 803317 29 100.0 32 ............................. ACCCACCTGTTTTTTCTCGACGGCGCTCAGTA 803256 29 100.0 32 ............................. ACTGGGAGCGCGCGGCACAGGCGCAGCAGGGG 803195 29 100.0 32 ............................. CACGTCTATTTTTGAACGCAAAAAGCCTCTTG 803134 29 100.0 32 ............................. CACGAACGGCTTGCGACGGTCGCTCGCGAAGC 803073 29 100.0 32 ............................. TTCATTGCCACCGGCAGCTACATTGAAAACAA 803012 29 100.0 32 ............................. CGCGACTACTCGCAGTTTATCGCGTACCCCGA 802951 29 100.0 32 ............................. TGATCGCGGCCCTTCGTGAGCGTGGAGCAAAA 802890 29 100.0 32 ............................. TCACCCCGCATTATTGCCAAACCTGGTTATTG 802829 29 100.0 32 ............................. ATTTCCGCGGGCGCAGGGTGACAGTGATTAAT 802768 29 100.0 32 ............................. CCGCAGCCGCGCTGAAACAGGCGCAGAACCTG 802707 29 100.0 33 ............................. TGCGTACAGAAGTGCGTAACAGTGATTTAAAGC 802645 29 100.0 32 ............................. CGTGGAGACTGAGAAATGACAATCAGTTTTGA 802584 29 100.0 32 ............................. AAAAATGTTGTTAAAACTGATTTTGTGCGCGC 802523 29 100.0 32 ............................. GACGTGATCGGTGAGCGGATGAAAATCGCATA 802462 29 100.0 32 ............................. GCCGGGAGCATTGGCGGCGGCCGCATGAGAGA 802401 29 100.0 32 ............................. TGCGGGCTGGGCTGTTGTTCAGCGAGATTTGC 802340 29 100.0 32 ............................. CGTTTCGCTCGCACCTGGTTACAGAATTGTAC 802279 29 100.0 33 ............................. CACACCAGCGCATCAAACTGGCCCTGTGTGAGC 802217 29 100.0 32 ............................. TGGTCGACGCCTGCGCGAACGGCGGCACGCTC 802156 29 100.0 32 ............................. TTCATGGAGAGCGTAGAGCCGGGAAGAATTAT 802095 29 100.0 32 ............................. TCCGGCAATATCGAGCTCTATCGAATAAATCT 802034 29 100.0 32 ............................. CTAATTACCCTCGCTGACGCGCTGGCGGGCTA 801973 29 100.0 32 ............................. GACGCGGGTATTTACATAGAGCAAAACAAGAC 801912 29 100.0 32 ............................. CCCCGTTGCACTTGAGCCGGGGTTTTTCTCAT 801851 29 100.0 32 ............................. GCTGCTCTGCCTGTATTCGTGGTAACTGCACC 801790 29 93.1 32 .......T....T................ TGGCCGCGCTTGGCTCGACTATCGGGGCGGCA 801729 29 96.6 32 .....T....................... TTCGACGGGCTATCTGCCGAAGAGGCGGAGCA 801668 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGTTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGTGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACAGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAAAAAAACTTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTTGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGTCACGCGAGAAATAACGATGATGAATTTTATGATGCCGACTTTTTTATAAAGGCGCAGGACATTATGCCTGACTGGCCAACACATACGGTTGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGACGTGGTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 833882-831045 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNQ01000001.1 Cronobacter dublinensis strain cro3214W contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 833881 29 100.0 32 ............................. CCATGCGCCAAACTTCTGGCGCTGGCTACAAC 833820 29 100.0 32 ............................. CATTTATTATTGAAAATGAAAAATTAATAGCC 833759 29 100.0 32 ............................. TTGTATGTCGCTGGCCGGCGCGTTTAATACGT 833698 29 100.0 32 ............................. CGGAAACGCTATATTTCCGCGCCTTACGCCCC 833637 29 100.0 32 ............................. CTATCATCTACCACATCAACCATAACAAATAT 833576 29 100.0 32 ............................. CTAAGAACGCGCAGATTGCGGAGCTTTTAGAG 833515 29 100.0 32 ............................. AAACGCACCCGTTACGACGAATATATTGAATT 833454 29 100.0 32 ............................. GTCTTATCGCGCCGTATGCGGCCAATAACAAC 833393 29 100.0 32 ............................. CACGTATATGTATATTAATCGCCGTCATTATA 833332 29 100.0 32 ............................. TGGCAATACATGCCTGTTTGACGGCGGCGGTA 833271 29 100.0 32 ............................. TGATGTGCGCTTACTGTCTCTTGTCTGGAATG 833210 29 100.0 32 ............................. TATTTCGATGATGATTGCTATCCACAGGAGTC 833149 29 100.0 32 ............................. GGCCGCAACGATCAGCACGTGACGCTTGTCGG 833088 29 100.0 32 ............................. TTCGTTGAGAAAAACCCCGAAGCAGTCAGGAC 833027 29 100.0 32 ............................. GATTAATTTATCCGCCTCAAGCATCAGGTGAA 832966 29 100.0 32 ............................. AGATTTTTTTTACCGTGGCAATTTTGCGCATC 832905 29 100.0 33 ............................. TATTGCCGCCAGCAGGTGCGCCTGCTGATCGCC 832843 29 100.0 32 ............................. CAGGCGCCGACCACTGTTGAAATGACCGTAAT 832782 29 100.0 32 ............................. TCCTGACGAGTGGAGCGCAGTAGGCGTTATCG 832721 29 100.0 32 ............................. CTGGAAAACTCCCGCTGACTATCGCTATTCAT 832660 29 100.0 32 ............................. CGCGCATACAGAAAGCGCGATTACACCAATAT 832599 29 100.0 32 ............................. GTGTGTTTGTACCACTGGAGTCGTACGACATC 832538 29 100.0 32 ............................. AGGATACCATCCAGGGTGTTGTTTCTCAGCCT 832477 29 100.0 32 ............................. CACGCGGGTAGGGCAGACATCTTTCCCGGCTA 832416 29 100.0 32 ............................. AGAAAATGCCGATTGAAAACCCGACCTATATA 832355 29 100.0 32 ............................. TGGTGCCAGTCGGCAATCGTCCGTAAAAATGA 832294 29 100.0 33 ............................. CAGTTTTGCCTGCGCAACAAGGTGCCGGTAATT 832232 29 100.0 32 ............................. AACCGCAACTCCTGCGCCACTGGCGTCAGATT 832171 29 100.0 32 ............................. CCTTACCAAAGAGCAGCACGACTGGATCAACG 832110 29 100.0 32 ............................. GAGTCTTTACCAGAAAGCCACCGGTTACAACT 832049 29 100.0 32 ............................. TCAGTTCTTCTTCGTAAGCTCAACAAGGGCGA 831988 29 100.0 32 ............................. CCTTTTGAGATGTTATCTGTCCTGAAAAAGAT 831927 29 100.0 32 ............................. GTTGTCAATATGGGGCTGAGTTGGCTGTGCGC 831866 29 100.0 32 ............................. GTTACGGTCCCAGCCCGCGCTCTTACGCGCAT 831805 29 100.0 32 ............................. ACACCAGGCTGCATAAGATATTTTTCTATCTC 831744 29 100.0 32 ............................. GTGCGCGCTTCATTTTTTATCTTCCCAGCTTG 831683 29 100.0 32 ............................. TTTAGTGAGGCGGCGCAGGTGTGGGAACCTGT 831622 29 100.0 32 ............................. GACTCGTTAGAGCAGGCCTCGCCAATGCTCGA 831561 29 100.0 32 ............................. GGCTACGCGATTGGCTTTAACTGGCACGACGT 831500 29 100.0 32 ............................. TGGATAGGCTGGAGTCCGGCATATGCGAAGAA 831439 29 100.0 32 ............................. AGTGATCATGCTGCCTCCTTTTTTAGCGCTCT 831378 29 96.6 32 ............T................ CGTTACAAAATCAGATCAAAAACAGTTACCAG 831317 29 100.0 32 ............................. GGAACGAGCAAATGGCATTAAGCACTGAAGAA 831256 29 100.0 32 ............................. TAATCGGGCATGTGCGAGTTCGCGTACTGCTC 831195 29 100.0 32 ............................. GAAAGCAACAACAGAGAATAATTTGGGAAATA 831134 29 100.0 32 ............................. TGGGTGGATGTGGTGCATGCCGTCTACCCGAA 831073 29 93.1 0 ...........C..C.............. | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCACACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGATGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTCGGGCCCGAAGACGAGGTGGTCGCCGATGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCCGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCTGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCATTCGCCGTGGCGCAAAAACTTACCTCTGCCAACCCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGATGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCGTCTTTTTCCGGGCGCTGAACAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATCAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCATCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //