Array 1 144016-143685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000019.1 Tumebacillus flagellatus strain GST4 Contig019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 144015 36 100.0 38 .................................... CATGGCTTACAAGCGTCGTGACACCGAAACCACGCAAG 143941 36 100.0 38 .................................... CTCTGGTTTGCAAGTCTCATCTATGACGACAACGAGCG 143867 36 100.0 39 .................................... CACACGAGAGCCGCGAATCGTTTACGTCCGAATTCGTCC 143792 36 100.0 38 .................................... TATTTGCGCAAGAATTGTGGAGGCAATGGATGCAGCCT 143718 34 88.9 0 ...............A......T....--....... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 97.8 38 GTTACAATCCTAGACCCGATTACAAGGGGACTGAAA # Left flank : TATACGGGAATCGCTGTATATACAGTGACCGCGACACTCTGCACTTTCAAAATGCGACACACAAGGCCGAAAATCAGCTATTTTCTCCATGAGGTGCATCGGTTATACTTGGAAGGGATACAATAGGTCTAGGGAAATTGATTTTCGAGGATCCCCCCTAGTTTTGAAGCAAAAAGTCGATCCTCGAAAAAATGTGCATTTGCGACCGTTCTAAGAGTCACGAGAAGCCGCGCCGTGTCTAGGTTTTTCTATGCATGATTCGGGC # Right flank : TAGCTTGCGCGTGAGAGGCTTATATAGATAACGTGGATTTTATGCAAACTTTCTTGCAAGATGAAACTACAAGTCAAGCGGTGTATTGTTTGGCTCAATATTAAATGAATCGCACGGTGATAAAATGGAAAACCTTGCACGTAAAAAAGGAAGTATCACGGGAACTCTCGTTGGGGTAGCAGCCTATTCTTTTCAAGTGCATCGGTCATCGAAGCGGATTGCATTAGAATGTATGGAAATAAATTTCATGCGGAATACCTTCCGATGAAGGTGATTCAAGATCACACTACAGTGATCCTGACAAATTCGAAATGACTTCTGCACCCCCGCGTGCAGGGGTCTTTTTTTTCGATACAAAACCCTCCCCAGACACCCCCTCACGTTTTCTCCTCCGCCCACATAGGCTAGGGTGGAACTATCCCACGGAATGACTGATGAGGTTGAGGAGGGAACATCACTTGGCGAAGAAAGACAGTTTGACATACGACCTTGGCACTGTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATCCTAGACCCGATTACAAGGGGACTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 38678-38270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000020.1 Tumebacillus flagellatus strain GST4 Contig020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 38677 37 100.0 38 ..................................... GGATTCGAAATGCACGCAGACCTCACAAGCCTTGGTTT 38602 37 100.0 36 ..................................... CTCTCAATTATATGTTTTTTGTTTTACGCGAATCGA 38529 37 100.0 38 ..................................... GTCTTGGTACGGAACTCCTTTAGAATGGCGTTGGCGGT 38454 37 100.0 36 ..................................... CACAAGAGACATCGGTCGGACTACAAGTTCTATATC 38381 37 97.3 38 ...................T................. TGTGGCCGTTGTGTGCAGCTCCACGCGTTGACGTCGTA 38306 37 86.5 0 ....................T..C.......AA..T. | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.3 37 GTCACAATCCTAGACCCGACAAATAGGGGACTGAAAC # Left flank : ACGTCTCAACGCAAGACCGACTAACAGGGAAACAGAAACTAACTGGATAGAGCTACATTGCAATTCCATTCCGACTATTAAGAAAACGGAAATGGTTGCAGTACATTTATGCGCCTCTTCCCAACCAATGGTCGAAGGAAGGTTAAAAAAGGAGTTTCACCGATTCAGACGGCAATGTGTCTCAACAATCTGACGGTGATATTGTGTTCTATCCAGCAGATGCCCCCTCTTGCGATGATTTCACGGAAGAGGTCACGCATAAAATGAGCAAGGCCGGCCACGAAGGTCGGTTTTTTCGTATGTAAAAAAAATCTATTTTCACCAATGGATACATAAGTTATACTAGGTTTACGCAAAATAACCATGTGAGAAACAACTTTCGAGGATTGAGGGGGTTTTTGAGCAAAAAACCGATCCTCGAAAAATGGAGAGTTCTAGATGAAAACGGAGAGGGCTGGAAGCCGCATCACATCTAGGATTTCATGTGCGGATTTCGGTCG # Right flank : TAGTAAATCACCACACAAAAAAAAAAACACCTGCTCAGAGTGTGGCCGCTGAAAGTCCTATTTTGAAAAACAGCACGAAACTAAAAAAGCGCATGGCCTCTAGTAGACTCATAGCGCTTTTTATAGCATGAAGGGATACATCCAAGTACCCCTGAAAGTCTGTGTTTTGAAAAAATGTTGGACTTTTTCAGCGGCCTCCTCAGAGGCAGACGCTTTTTGCTATGCATGTACGAGTACTTGTTCGACAAGATCATTCGTTTCTCGAAAGATGTACGTTTCAGGAAATGACCCGAACAGTAGCCTATACATCTCCCTCATATCTGCTAATACGCGAAAGTCCTCTCCCCCATAATTATTCTGGAGGTCTTCATGAGAGACGCCTTTGAAGTTATGGGCAATCGGACTTTCATTGCGAAGGGTAGCGAGATTGTCCATTTTGCGGGAGTATCTCATGAGTTTTTGTAGAAGATTATGGTCAGGGTGGTTCTTTTCGATATGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCCTAGACCCGACAAATAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 40289-39139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000020.1 Tumebacillus flagellatus strain GST4 Contig020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 40288 37 97.3 38 .........T........................... ACATAGCAGCAGTACCTATCTCTACAGCCGCACCAGCC 40213 37 97.3 37 .........T........................... GCCCGATTGCATACGCGCAAGCGCACGTATTATATAA 40139 37 97.3 36 .........T........................... GAATATCCTTGTACTCAACTGAAGCCTGCCTTACCA 40066 37 97.3 37 .........T........................... TGCTTCACCGATTTCCACGGTCAACATCGGCGTGCGT 39992 37 97.3 36 .........T........................... ATCCATCGATACGTAGTTGCCGCCAAAGTTGGGGTC 39919 37 97.3 38 .........T........................... TGACCAAGATTTACCGCATCTTTTTGGTGTTGGGTCAA 39844 37 100.0 36 ..................................... TGACAATGATTTTCTGCTCGCCACCAAAGCGAAACT 39771 37 97.3 38 ......................T.............. TCTAAGAACTCTCAGGCATGTCTGACGATTTGGTTTTG 39696 37 100.0 39 ..................................... TTGGATTTATGGATGGACATCATCTGCACTGCGTTACGC 39620 37 100.0 39 ..................................... AATTGCGCGGCGTACGCGGTGAGATAAGCCATTTCCGTG 39544 37 100.0 37 ..................................... TCTGGGACTCCATCAAGCAGCTCGCGATAGCATACTG 39470 37 100.0 38 ..................................... TGCTTTTGGGGCGGGGGTTATGCAGGATTCTAATCACC 39395 37 100.0 37 ..................................... ATTACTGCGTCACTCTTCACCGTCACCTTGTCGTAGG 39321 37 100.0 36 ..................................... TTGATGCCTGAGTGGGATTGGTCGTTGCGTGACCTG 39248 37 100.0 36 ..................................... TGATGGAATGGGCAAAATTGATCAGTTCGCGGCAAC 39175 36 89.2 0 ........G.......-...........A..A..... | A [39146] ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 98.1 37 GTCTCAACCCAAGACCCGACTAACAGGGGACTGAAAC # Left flank : GTCTGGTCTAGCCTCCTTGTCGAAATACTCGGCATGGTATTGGCCAGACTGACGATCAAATTGATGGACGATCTCATGGACGTGTCGTACGACCGCCGCTCGGGGCAGACGAACTGGGCGATTCGCTCCGGAGTGGTGGAAGCGACGCTGCGCAAAGGCACCTGTCCGATTTACGACCGGTCCGTAACGGAAGAAGGAAAAAGGCACGCTTTCTCGACACAGAGTGGTGTGCCTTTTTTCGCATGCTCTTGATTTGATTCACTTGCGGCACCGGCCACGAAGGTCGGATTTTTTCGTATGTACGTAAAAAATCTATATTCACCAAGGGATACATAAGTTATACTGGACGTACGCAAAATAACCATGTGAGAAACAACTTTCGAGGATCGAGGGGGTTTTTCAGCAAAAAACCGATCCTCGAAAAATAGAGAGTTCAAGGTGGAATTTGAGATGGCTGGAACCCGCACCACAGCTAGGTTTCTTTTTGCGGATTTCGGTCG # Right flank : TAACTGGATAGAGCTACATTGCAATTCCATTCCGACTATTAAGAAAACGGAAATGGTTGCAGTACATTTATGCGCCTCTTCCCAACCAATGGTCGAAGGAAGGTTAAAAAAGGAGTTTCACCGATTCAGACGGCAATGTGTCTCAACAATCTGACGGTGATATTGTGTTCTATCCAGCAGATGCCCCCTCTTGCGATGATTTCACGGAAGAGGTCACGCATAAAATGAGCAAGGCCGGCCACGAAGGTCGGTTTTTTCGTATGTAAAAAAAATCTATTTTCACCAATGGATACATAAGTTATACTAGGTTTACGCAAAATAACCATGTGAGAAACAACTTTCGAGGATTGAGGGGGTTTTTGAGCAAAAAACCGATCCTCGAAAAATGGAGAGTTCTAGATGAAAACGGAGAGGGCTGGAAGCCGCATCACATCTAGGATTTCATGTGCGGATTTCGGTCGGTCACAATCCTAGACCCGACAAATAGGGGACTGAAACGG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACCCAAGACCCGACTAACAGGGGACTGAAAC # Alternate repeat : GTCTCAACCTAAGACCCGACTAACAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 22368-22183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000047.1 Tumebacillus flagellatus strain GST4 Contig047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 22367 38 100.0 36 ...................................... CTCCGACCGATCTCGGCCAGATTCATCTAGAGCCGA 22293 38 100.0 35 ...................................... GCGGCCGTACTATACGTCAAAGTTCGTGTTTGGCG 22220 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 100.0 36 ACTTTCAGTCCCCTGTTACTCGGGTCTAGGATTGATAC # Left flank : ATCTTTGTAAGCTCTGGATTTTTAG # Right flank : CGACCGCGAAGCCCTGAATCAAACCCACTCATACTGCGGGTTCCCGCGATCTCTTTCCAGGCGTGGGCCACGATTTTTTTCGAGGATCACCTTTCTGCTCCAAAACCCGCCCGATCCTCGAAACTCCTCGAATCCCATACTTAGTATCCCCTTACTAGTATATCTCATCCCTTTCATGGAGAGAATATCTACTTTCCACATAAAAACTGTCCTCCTCACAAGGAAACAGCCTCCACAACTATTTCCCAATTTAACCCATTTCCTCTGCGCATCCGACAGCACTTTCATTCCCCGGTAGTTCGAAGCGTTTCATGATAAAAAACATAGACAAAGGCAACCAAACGTCGAATAAGAAACAGAATTACCGTTACAACTTGTATACTCATGCGGTCACAACCTAAGACCCGAAATACAGAGTACCGAAAGAACTTTCAAAAAAAATCCGTCTTCAACACACCTTTAGAACAATTGGATTTACCCAGATCAGGTGTAACAGTCGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTCAGTCCCCTGTTACTCGGGTCTAGGATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 722-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000010.1 Tumebacillus flagellatus strain GST4 Contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 721 37 81.1 37 ....T.T..T....AA...A...........C..... CCAAGACGAGCAAGTGGACTTTCCCGAAGGCGCATAC 647 37 91.9 25 ...........T..............T........G. TCGCACTTTGATGCCAATGATATTT Deletion [586] 585 37 100.0 37 ..................................... GATGACTACTGTTTTGATCGCTCGCCCACTTCCTAGT 511 37 100.0 37 ..................................... CCAGGTTTGAGTTGTTGTCTTTGATAGCGAACCGGCT 437 37 100.0 38 ..................................... CGAATGGTTTCAACGCTACCTGCCGCTTCTTCCGAAGA 362 37 100.0 38 ..................................... CTACACGAAGCGACTAGAGGCAAAGGCGAACAAGGACA 287 37 100.0 37 ..................................... CTTGTAACGCTTGATTCGACGCTCATCTGCCGTTTCT 213 37 100.0 38 ..................................... GATGAAGCTATGGATGCAGCGTATATTAAGGCGTTCAA 138 37 100.0 37 ..................................... CACGGCGATTGGGCGGCATATTGTGACGTGACTGGTT 64 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 97.3 36 CTTTCAGTCCCCTGTTACTCGGGTCTAGGATTGATAC # Left flank : CCGCCCCATACGTATGAGCTTTCAGTCCCCTGTAGTTTGGGTCTTGGATTGAAACTTCGGGAGGTTCACTTGCATCGCGGCCTCTCCGATCACTTTCAGTCCCCTGTAGTTTGGGTCTTGGATTGAAACCGACCGCGAAACCCATATCAAAATCCAGTCGTATTGCGGGTTCCAGCCGTATCAATCAGGGTGTGAATGTTGATTTTTTTCGAGGATCACTTTTTTGCTCCAAAACCCGCCCGATCCTCGAAACTCGTCTTTTCCCACATTTAGTATCCCAACACCAGTATATCTCATCCCTTTCATGGGGAGAATAGCTCTTTTTCACAAAAAAGCCGTCTCTTCATGAGAGAACAGAAACCCTACCTTATTCCACTTCTACCTCGCGTGCTCTGCCCAAGCAGGAGGCCGACACCAACACACTCCGAACAACTGCCCACGTGACAATAAAATTCTGAAGTTAACTGCTAAATGCCTTGCGTATTGCATTCGCAAAAATC # Right flank : CTCATGGGCTTTGAGCCAGCCACTGTTA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCCCCTGTTACTCGGGTCTAGGATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 1424-1093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000010.1 Tumebacillus flagellatus strain GST4 Contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1423 37 86.5 36 A......C...T.......C.........G....... GGGTTCATTTTCGCTAGTTGGGCGCGCGGATCGCGG 1350 37 100.0 37 ..................................... AGTTTTCTATTGACTGACCGCTATAAACCCGTCAGAG 1276 37 100.0 36 ..................................... TCTGTCGCATCTTGTGAGCCGCCCCATACGTATGAG 1203 37 100.0 37 ..................................... TTCGGGAGGTTCACTTGCATCGCGGCCTCTCCGATCA 1129 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.3 37 CTTTCAGTCCCCTGTAGTTTGGGTCTTGGATTGAAAC # Left flank : AAGACCTCCCTGTTCGGATAGGCCATTGACTATCATTGTTCTGAGAAAGTATACCTTCATCGCTATCCCGTGCTGATGAGGCGTTCGTCCATTTTGGAGATGGCTTAGCTGAAGCCGGGGTTGGATGTCCGGGTTGTGGCTTGGAGGCTGGGGGAGACGACCTTGGCAAACGGGCGACCTTGGGAGGTGAGAAAGTGGATGGAGATGCCCTCTTCGACACAGCTCTCGATGACGTCGGAAGAAAGGGTGACGCCGCGGGAGAGGATGAGAAGATCGTGGACGTCGAAGAAGGGGACTTCTTGGATGATTTTGCGGTCGCGATCGCGGATGACCAAGCGCTCGCTTGCCTTGCGGACGGACATGCCGTATTCGTCGATGAGAAGTTGCATGGGGAACACATCCTTGCGAATTTTTTGGATGGTATCTATTTTCGCAAGATTTCGGGGAGTTTATACGGGTGGGAGGGATTTTTTTGTGGGTTGTTGACTGGTTGAAGATTA # Right flank : CGACCGCGAAACCCATATCAAAATCCAGTCGTATTGCGGGTTCCAGCCGTATCAATCAGGGTGTGAATGTTGATTTTTTTCGAGGATCACTTTTTTGCTCCAAAACCCGCCCGATCCTCGAAACTCGTCTTTTCCCACATTTAGTATCCCAACACCAGTATATCTCATCCCTTTCATGGGGAGAATAGCTCTTTTTCACAAAAAAGCCGTCTCTTCATGAGAGAACAGAAACCCTACCTTATTCCACTTCTACCTCGCGTGCTCTGCCCAAGCAGGAGGCCGACACCAACACACTCCGAACAACTGCCCACGTGACAATAAAATTCTGAAGTTAACTGCTAAATGCCTTGCGTATTGCATTCGCAAAAATCCTTTTATTCTCCTGAAACTAGGGTCTAGGATCGATACCCAAGACGAGCAAGTGGACTTTCCCGAAGGCGCATACCTTTCAGTCCCTTGTTACTCGGGTCTTGGATTGATGCTCGCACTTTGATGCCAAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCCCCTGTAGTTTGGGTCTTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 2773-1489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000060.1 Tumebacillus flagellatus strain GST4 Contig060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2772 37 100.0 37 ..................................... GGCCAGTTGCCGGTTTCGATGTAGATCATGTAGGCTT 2698 37 100.0 35 ..................................... AAGATATAATCGACGGTCACGTTGTGATAGTCAGC 2626 37 100.0 36 ..................................... TGATCACCGACTTGAGCCGTCAGCCAGTACGCGAAG 2553 37 100.0 37 ..................................... CTTTTTATGCTTTTTGTTTCGCAAAAAAGGGCGGTCA 2479 37 100.0 36 ..................................... AACGTCAACGTCGACGATTAGGCCGTTACCGATGTA 2406 37 100.0 37 ..................................... TGTGGGTTGGGAGCACGGCCCGGACAGCGCCGAGCTT 2332 37 100.0 37 ..................................... TTTTGGTAATACGAAAGCAATCGCATTACAGTTTGTC 2258 37 100.0 36 ..................................... ATAGTCTGAACGACTTCATATTGTTTTTTATACTTC 2185 37 100.0 36 ..................................... GTGTAACCGAACCACGCCGCCAGAGTGATGCCCGAT 2112 37 100.0 37 ..................................... TCTGACTTGAGGGGCTTTTTTTGCGTGGTTCGTTGGC 2038 37 100.0 37 ..................................... AAGAAGAAAGGATGAGCGCCATGACCAAGGACACGAA 1964 37 100.0 36 ..................................... AAAGTGTACTCTTTGTATCGCGCGATTTCTGACGGT 1891 37 100.0 36 ..................................... TGCTTCTAGAGCTCTGGGCCGATCAAGCTGGATCAG 1818 37 100.0 36 ..................................... TGCCGATGAAGAGAGCTATTCGCTTGATTCTGGGTA 1745 37 100.0 36 ..................................... AGACTTCCTCCGTCGTCAGCTCGCGGATCGGCGTGT 1672 37 100.0 35 ..................................... TTTGAGAAATCCGTCGTTGAGCAGGAGAGGGAGAT 1600 37 100.0 38 ..................................... ATCACAATACCACTGAAACATTAAACGAACAGCTTCCG 1525 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 100.0 36 GTCTCAACCTAAGACCCGAATTACAGGGGACTGAAAG # Left flank : TATTATCAACTAACGTGTAGATTGGTGCTTCCAAACTCAGCTACGTCACCTCTGAAACCACTAGTTTATGTTCAATGTTAAGAGGATAGTCATTCTTCCATAGTAGAATATTATAAAAGATGTTCCGATTTTTGTACATAACTTTTAGTGAAAATCCGCAATAATTCTTTACTTCCGTTCGTCCTTGTTTACAACCTCTTGATTGCCCATGCAATAGCTCAAGCAGTCAGTGGGCTGGCAAGGTAGGGAACCTGCGAGGTATGGTTTTCTGTTCTCTCCTAACATAAAGAGACGGTTTTTTGTGAAAAAGAGATATTCTCCCCATGAACGGGATGAGATATACTGGGGAGGAGATACTAAATGTGGGAAAAGGAGAGTTTCGAGGATCGGGCGGGTTTTGGAGCAAAAAGGTGATCCTCGAAAAAAACCGCAACTCACGCCCCGACAGAGATCGCGGGAACCCGTAGCAGGAGTGGATTTTGTTATGTGCTTCGCGGTCG # Right flank : ACATCGACAACGAGCGAGATGACATGTTCGAAAAGGATTCCCTTGATGCAACGGATGACGATCTGTATCGAGCCAAAGCCAATGCCTTGCTGCGCCGACTGAAAGAGAGCAAATGGATCGACATCGAGGACCGTGACCAATATCGCCAATTTGTCGTCTTGCCTCACTACTCCAGCCGCATCTTATCGGTTCTCCAAGAGTTGTGCGAGGGACGCTCAATCGAGTATCAGCGTTACGCATTCTCCACCTATCAATTGCTCACGGGGGAGGAAGCCAAGCAGAATCCCTGCTTTGCTGTCCAAGAAGCAGAGAAGATGACCAGATCGTTCCTCGAAGAACTGCAAATTTTGGTCAACAACATGAAGAAACACATGGAGCAACTGACCTCCATGTCGACCATCGAGGAAGTCCTCGACTACCACTTCAACCGCTCATAGCAAGTCGGTGAACGTTGGCCTGCTTCCGGGTGGGGTAGGATTGACAGGGGAGACGATCGAGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACCTAAGACCCGAATTACAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 4613-5978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIR01000060.1 Tumebacillus flagellatus strain GST4 Contig060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4613 37 100.0 38 ..................................... GTTGAACAGTGGATTCAGGAACTCCCCGACCACCTAGA 4688 37 100.0 38 ..................................... TTGATACGCGGCCGCACGTAGCAGAGGCTCCGCCCTGA 4763 37 100.0 37 ..................................... TGGCGCCCTCATATTCGACTGTTTCGAATTCTTTCTC 4837 37 100.0 36 ..................................... CACAGTTTTTGGCCAATTTGCGGTAACATCTTGCCA 4910 37 100.0 37 ..................................... ATCGGGTTGTATTCTTCGCCTTCTTCAAGTTGCGCCG 4984 37 97.3 36 ..................................A.. GACGCTTGCTTCGCCAACTCCCGATGTGCTCAACGC 5057 37 100.0 37 ..................................... CACTCAAGTACGGAGCGGCGGACATGAACCTCATGTC 5131 37 100.0 36 ..................................... CTCGGAAGTCTGATCCGGAAGTATCGTAAACAAAAA 5204 37 100.0 37 ..................................... GATGCACCCTCTTTAACGAAAACGCGGGTCAAAATTT 5278 37 100.0 37 ..................................... CGACGCCTTCGCTTCCTCGATCGCGGTCTGTGCGTCC 5352 37 100.0 36 ..................................... CGGCATTTTTTATGCCAAAAACGCCCCGAATCCATG 5425 37 100.0 37 ..................................... TTAAGGCAGAGAAAGCAGGGTCAATTTTTGCTACAAT 5499 37 100.0 37 ..................................... GAGGATCGACGTTACTTGGTTGGTGAGGCATTAAAAG 5573 37 100.0 37 ..................................... TCGACCATTCCGCGCGGTTGCTCGGAATGGTCTCCGT 5647 37 100.0 37 ..................................... CAGCTATGCGCTCTATGCTCTCCTATCTCGTAAAGAA 5721 37 100.0 37 ..................................... AATGGGCAGCCCTGATGAACAAGATTTTTGGCGAACA C [5733] 5796 37 100.0 36 ..................................... CGGGTCATCGCTGCCTGTTCGAATCTTACGATCAGA 5869 37 100.0 36 ..................................... TTGTGCAACTGAATGATCCGTCGGAGTTCCATGTGT 5942 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 99.9 37 CTTTCAGTCCCCTGTTACTCGGGTCTAGGATTGATAC # Left flank : GTTAAAGTGCAAGAGAACGATACTGCGTTGAGGGTCATTGAACAATATGTTTAAATGTGCGCTATCTCGCTTGTAAGTGCTTATTCGAATTTTACTCAGATCGGGATGACGGTGAAGCAGCCTTGAAGTATTATAAGAAGGGAAGGGCATATGCTTCTTCCGTAGTGGAGTTCTACGAAAAGGAGGAATACTGATGAAATTAAAATTTCTGGTGGGGCTTCTCGTTGCTGTTGCTTGTATCGCAATCGGAAGTTCTAGCATCCAGCAGACTGCTGAAATATCTCCACCTGGACCATTTGTCATTGTCAACTATAAGTAATACCTGTACTCCTCGATCTGCATAAAACAGGGCAACCGTATAGGAGACGGATTGCCCTGTTTTTGGTGCGGAAATTTGTCCCGTAGCTATTTCCCGAAGATTTCGACGAGAATCTCTGATCCTTTTTGACATCCTCCATGTCTAGTTTGGACAGAAGCACCTGTTACTCAGGTCTACAATA # Right flank : ATGCCTGTTATCTTTGTAAGCTCTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCCCCTGTTACTCGGGTCTAGGATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //