Array 1 2245295-2243289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009507.1 Methanosarcina siciliae HI350 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2245294 37 100.0 35 ..................................... TGTTCTTTCGTAACTCCTATTTTTGTTTCAGTCTC 2245222 37 100.0 37 ..................................... TTCCTTTTCTAGGAACATTTTAATGTCGTTATTTTCT 2245148 37 100.0 36 ..................................... TATAGCAAGATTATTTCTCTCAACCTTTTTTAGAAA 2245075 37 100.0 35 ..................................... ATTTGAACCTCTTTTATTAGTTTTTATCTTTTTTT 2245003 37 100.0 36 ..................................... GTTTTATCTCCTCTTCGGGGGTAAATCCTCTCTTTT 2244930 37 100.0 36 ..................................... CAAATAGTGTATCTACTCCTGTTCTTTCGCTTTCTT 2244857 37 100.0 37 ..................................... TTTTTTAATGGTTGCTTCTAAAACTTCCTTTTTTATA 2244783 37 100.0 35 ..................................... CCATTAAGTCTGACTTTTATCAGTACATATGGCCA 2244711 37 100.0 37 ..................................... CTTTGTTTCTTCTCTCATTCACGAGTCTATTGTGCTC 2244637 37 100.0 35 ..................................... TTTCTTGGAGAGGATGGTGATAGATTCTTATCACA 2244565 37 100.0 35 ..................................... TTTCTTGGAGAGGATGGTGATAGATTCTTATCACA 2244493 37 100.0 37 ..................................... CATTAACGAAAGAGCTATTACTCTGCAAATTTAAACT 2244419 37 100.0 35 ..................................... TCAACCCTTTCCTGGTATCCAGCCGGAACTTCACC 2244347 37 100.0 38 ..................................... TACAGTCTCCCCTCTGGTGTCTGTATTCATGTCAAACG 2244272 37 100.0 35 ..................................... CTGTTACTTCTCTCAGATCATAGATTTTTTTGCAA 2244200 37 100.0 36 ..................................... GCATAACAATAATTCCCATGCAAAGTCCCGGAATGA 2244127 37 100.0 36 ..................................... ACGACGATTCGAATGAAGTATGGGATTGTACATAAT 2244054 37 100.0 36 ..................................... CTCAAGAGGAATCTTTTTCAAGTCCCTCCTCCTTAC 2243981 37 100.0 35 ..................................... TCTTGATACATGACGTACTACTCCTTGGTATTGAA 2243909 37 100.0 36 ..................................... TCATAAATGGTCCGTAGTTTTCATAGAGGATTTCCG 2243836 37 100.0 37 ..................................... TTGTTCTTCTCCAACAACAAACCTCTCAGGGATTATA 2243762 37 97.3 36 ........................A............ CTCATAAACAGTTGGAATTCTTTCCTCCTTTTTCAA 2243689 37 100.0 35 ..................................... CCATCAAAATAAACGTCCGCGAAGAAATCCACATC 2243617 37 100.0 37 ..................................... TTGTTCTTCTCCAACAACAAACCTCTCAGGGATTATA 2243543 37 97.3 36 ........................A............ CTCATAAACAGTTGGAATTCTTTCCTCCTTTTTCAA 2243470 37 100.0 35 ..................................... CCATCAAAATAAACGTCCGCGAAGAAATCCACATC 2243398 37 100.0 36 ..................................... AATTTCTGTTTTAGTTTCAATCATTTTACATCACCT 2243325 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 99.8 36 GTCGAAAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : ATCCGAATTCTTGAAGTTTGTACCCCCCGTTTTCCTGAAGAATCACGCTTATTCTCAATTTGACCCCCTTAATTTTCAAAAGAACAATATCTGCATAGAACATCACAAAATACTGTTTTGAAGTATTTCTAAAGTAAAATTAGATTTTTCTAAGGAGCCGGGATGAAAAACTCGCTATCAGACGACTCGATAAACTTATTATTAGAATTATAAATGTATCCGAGACACCTTACTTTATAAATGATTTTTGAAAAGTGTACAGATATGTACATTATAAAAAAAATAATTTCGCTACCAAGCAGTTGAAAATACAAAAGTTTATATGGTATCCATCTTTATATACTACTTAGCTAATTGTCGACGGAGAAATTTAGTTAACAAAAATAGAAGTAAGCAAATTTCAAATTTTATACAGTTTGAGCAAAAAACAATTTGTTTGCTATTGCTTTTGAGATTTGAAAATATTTGACAATTTGCTGAAATTAAGGGAAAACAACCCT # Right flank : CTTCGACCACTTGGTCGATGCTGAGCTTGGAGGAAAGTCGAAAAGTAGCTTCCATAAACAAAGATTAAACTTGTTTTCAGACTCCTTTTCTTTCAGAATAACCGAATCACCCATTAAACGATAGGATAGCAACTTATCAACATAAGAGGGTGTAATGGGAAATACACAGTTCTACAGACACTTTAGGTTTTAGTATTCTGCCATGTCTAACATCCAATCTTTACTCGATATGAGTATCTCCTATCTGGTCCTATAGGATACTATATGGCAGCTACAACTACGATATGTCTTGACCCCAAAGTTAAGGATATGCTCAACAATTTGAAAATTTATCCGACTGAATCTTATAATTCTGTAGTTGAACGGCTTATCAGGATGGCAGATGATGAGGAACCGCTGAGTGAAGAGGAAATTGAAGGAATTGAAGAAAGCCTGAAAGATATCAAAGCAGGGAGAGTTTATAGCGAAAAGGAAGCAAAAAAATTGTTGGGCATTGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 2263955-2261720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009507.1 Methanosarcina siciliae HI350 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2263954 37 100.0 34 ..................................... TCTTCAGCCGAGTAATGTTTTTTCTCCACCTCGT 2263883 37 100.0 38 ..................................... AGCTATGAAGGCTCGGTCAACCTCAAACCTTTCCGTTT 2263808 37 100.0 36 ..................................... GTCATTAAGATTCTCGATGAGTTCACTTGCTTTCAT 2263735 37 100.0 35 ..................................... AGCTACGATGACGTAAATGACGTCCTGTTGGCAGG 2263663 37 100.0 35 ..................................... ATTTCCAGCTTTACGAAGGCGTTGAAAGTACATTT 2263591 37 100.0 35 ..................................... ATGTTCCAGCAGGTGCAAGCAATGGAAGAACAAAT 2263519 37 100.0 37 ..................................... ATATACTCAGCAACGCAATATCCGTTGTCGTCTACGA 2263445 37 100.0 38 ..................................... CAGGATCCGATTCTCCATTAGCTCCTTTAGCAGGATGC 2263370 37 100.0 36 ..................................... CTTGATTATTCTGCATTATCAGCTGTCTGCTGAAAT 2263297 37 100.0 37 ..................................... AGATAATCTTAAGAGCAATCGCATCCCATGCCTGAGA 2263223 37 100.0 37 ..................................... TCTAATGCTTTCCCTTTCTCATTCATGATATCCCTAA 2263149 37 100.0 36 ..................................... AACTCCGGAGCCTCCAGTTGCTATCATGTATAAGGC 2263076 37 100.0 35 ..................................... TGATAGTCAGCCATCGTTGTGGCATTTATGCTGCC 2263004 37 100.0 35 ..................................... CTGATTATCCTTAGTTTTACTTCCCATACTACACA 2262932 37 100.0 35 ..................................... CTAGTGAAACTACCTCTATCAGATCTCACATCTTA 2262860 37 100.0 42 ..................................... TTCCTTTAACTGCAACGTCCATTGAGACATTCCAGTCCGAAA 2262781 37 100.0 36 ..................................... TGAATTTTGACTCAACAATCATTCCGTACTCGCCGG 2262708 37 100.0 39 ..................................... CATTACCCGATGCTGCCTGTGAAATTCCCTGTTTATCGG 2262632 37 100.0 37 ..................................... ATCTGAGCTTTTGTATTGGAAATTTTACGTTCCATTG 2262558 37 100.0 37 ..................................... TGTTTTTAATTTTGCCGTAGCATTTTTTACTGCCCTT 2262484 37 100.0 36 ..................................... ATCAACCAATACTACAGGAACTTCACCTTGTGGGAT 2262411 37 100.0 33 ..................................... GGTTTCTATTTTTATTTTTATTTTAAAACCCCG 2262341 37 100.0 35 ..................................... AAAAATAGGTACATACCTCTTGAGAGTCTATTCCG 2262269 37 100.0 36 ..................................... GTGAGGTAATTTAGGGTATGTTTTCCGGCAAAACTG 2262196 37 100.0 34 ..................................... TCATATCCTATCTCTTTGTCTTCGTCCATGTCTT 2262125 37 100.0 37 ..................................... TAGAGAATCTAAAATGCAAAGACCCCTTGGGAAAAAC 2262051 37 100.0 35 ..................................... AAAACAACTGGCATACAGCCGCAGCGCCTGCACTT 2261979 37 100.0 38 ..................................... CCTCATCCCCTTCGGGATCCGGCTCGACTTTTTTGCTC 2261904 37 100.0 39 ..................................... CAAAATCTGGTTCAATATAATCTCCTTTCTGCTCCTCAG 2261828 37 100.0 35 ..................................... AAGATTCAGCATAACCGGCAAAATGCTGCTTTGAG 2261756 37 83.8 0 ..........T.C.....T.........A...A.A.. | ========== ====== ====== ====== ===================================== ========================================== ================== 31 37 99.5 36 GTCGAGAAGTAGGTTCCACTAAAACAAGGATTGAGAC # Left flank : GATCCGAATTTTGGAAGTTTGTATCCCCGTTTTCCTGCAGAATCACGCTTATTCTCAATTTGACCCCCTGAATTTTCAAAAAAACAATATCTACATAGAACATCATAAAAAACTGTTTTGAAGTATTTTTAAAGTATAATTAGATTTTTTTAAGGAGCTGGGATGAAAAATACACCGTCAGGTGACGCGGCAAACTTATTACTAAAATAATAAATGTATCCAAGACACCTTACTTTACAAATGATTTTTAAAAAGTGTACAGATATGTACATTGTGAAAAAAAATATTTCGCTACCAAGCAGTCGAAAATACAAAAGTTTATATGGTATCCATCTTTATATATCACTTAGCTAATTGTCGACGGATAAATTTAGTTAACAAAAATGGAAGTAAGCAAATTTCAAATTTTATACAGTTTGAGCAAAAAACAATTTGTTTGTTATTGTTTTTGAAATTTGAAACTATTTGATAATTTGCTGAAATTAAGGGAAAACGACCCT # Right flank : TCAAAAACGCTTACTTTTTTGTCCGTTATTCTTTTCTTAAAAGCAGTACCAACAACTCTAATTAGGAAATAACCCGAATTCTTCGCAGCTAAGTATATCAGGCTCTGTAGATGACTGGAAATCAAGAACTATTTACGGAGGTACTTGATATCCAGAACCAGAGCCAAGCCGAAATTCAACTGAAACTTTACAACAAAGCAAAGAAAAAACCGGAAAAACGGTTCAAAAAACTCAAAAAATTGCTTTTGAAAGATGAAATTCTTTATGCAGCCTGGAAAAGCCTGAACAGGAATACAAAAGGCGCTGGAGTTGATTTCCTTACTGTCCGGCAGATGGAGGCTTCAGGGCTTGGGAATTTTATCTGGGGAGTAAAAGAAGAGCTTGAAGACGGCCGGTATACTGCTGATACCGTGAAATGGGTTGAAATTCCAAAACAGAATGGAGATACCAAGCAGCTTGGAATCCTGACTATAAAAGACAAGCTTGTCCAGGGAGCTGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGGTTCCACTAAAACAAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 2316134-2312021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009507.1 Methanosarcina siciliae HI350 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2316133 37 100.0 36 ..................................... CATATTCAGTTTGTACGGTTGATCCTGATGCAATTA 2316060 37 100.0 36 ..................................... TTCCTAAGAATCCAAGAACCAGAACAATACCAGCTA 2315987 37 100.0 35 ..................................... ACAAGTTCCTTTTCGTCCTAAACGTCTGTAGGACC 2315915 37 100.0 37 ..................................... TATGAAGGCGAGGGCTACTATAATTGTATCAGCCTCG 2315841 37 100.0 35 ..................................... CGGGAGAAATGATTTGAGCTTGTTCTGAGATGTCC 2315769 37 100.0 35 ..................................... CGGATTCAATAACACCACGATCGTAAACAATGTGT 2315697 37 100.0 42 ..................................... CCGGAAAACAGGGACCACAAAATACACGCTTGCGGTGCTTCT 2315618 37 100.0 36 ..................................... CATCAGGTACCATACCGAAGAAATAAACCCGGTACT 2315545 37 100.0 37 ..................................... TTCAGCGACACCACCCTGAAGGCAGGCCACGTCCTGA 2315471 37 100.0 34 ..................................... TCTCTCTTGATAGTGAAACGCTCAATAACACCAC 2315400 37 100.0 37 ..................................... TCCGGTCGCTTTTTAGGGACCATCGATAATGCCATCG 2315326 37 100.0 35 ..................................... TTTACAGAATGAAAGACGCAAGAAAAGCTCCAAGA 2315254 37 100.0 37 ..................................... ATTCACCCTCGCGAATAAAACGCTTTTCTTGCAATTG 2315180 37 100.0 36 ..................................... GCTTTTTGCGTCACTGGGAACCGTGCAATATTTTCT 2315107 37 100.0 35 ..................................... GTAAATCGGTTCGAAGCATGGTTTCGGATACCATA 2315035 37 100.0 34 ..................................... ACCTGAAACTGGAAGAACTTGTCCGGCTGAATGT 2314964 37 100.0 37 ..................................... ATACAGATGAAACTGAACGCGCGTTTGCTGCAAAAAA 2314890 37 100.0 36 ..................................... ACCTTTATCATAATTCACCACCTGTTAGTTTGCGTT 2314817 37 100.0 36 ..................................... CAGTATATGTTTTTTCAATCATGGTTTTGTAATATG 2314744 37 100.0 37 ..................................... CGCAGGTGACACAATCTCAATTAACATCGAGAATATC 2314670 37 100.0 36 ..................................... AGAAAAGGATCTTCAGGTGGCACTGTTGCATCTGAC 2314597 37 100.0 36 ..................................... ATAATTGCTTTTATTAAGATGATATTAGATGATGAT 2314524 37 100.0 31 ..................................... ACATTTTTTGCATAGGGTTCAACTGGGAAAA 2314456 37 100.0 38 ..................................... TTCCATCTTAAACCATACACTTCTCCAATTATAAATTC 2314381 37 100.0 37 ..................................... ACTTAATTTCATGCGACGTTTCGAAGTCTATTGATAA 2314307 37 100.0 36 ..................................... ATAGTGCTAAACTTCCTGATAGTGTATCGAGCTGCT 2314234 37 100.0 35 ..................................... TAAACACAAATACGCACCGGCTAACCTTACATTAT 2314162 37 100.0 36 ..................................... ATATTATCCCCGGGCAAAACGGTGAACGATTGAGCC 2314089 37 100.0 36 ..................................... AGAAACTTGTTGTTCCCAGAAACATAAATTCCAACT 2314016 37 100.0 35 ..................................... AATTTCCATATCTTTGATGAATTTAGTACATTTTT 2313944 37 100.0 36 ..................................... AAATTGAGGATTTAAGACCACTACCTTCTCAGAAAC 2313871 37 100.0 36 ..................................... CTACAATCTGTAATACATCACCAGATTCAAATTTCG 2313798 37 100.0 34 ..................................... AGGAAGTAACATCTGTCTCAAAATTTCGCAAGAA 2313727 37 100.0 37 ..................................... AATGATCCCATTGTATTAAGCGTGGCGTTTGTGTCTC 2313653 37 100.0 37 ..................................... GTGGATCTTGCTTTCGAATCCCTATTGTAATTTTGAA 2313579 37 100.0 35 ..................................... TACACTCCTTAACGTCTAACTGAAACTATTTTCTT 2313507 37 100.0 35 ..................................... TTATCAACCTCGCTTATTCTCAGTACATAATAATA 2313435 37 100.0 36 ..................................... CCTGATCTACATGCTTCTACTATGTTCAGAATATCA 2313362 37 100.0 35 ..................................... CATTGTATGTTGAATCTATACTTCCGTCGTCCACA 2313290 37 100.0 35 ..................................... CCCATTCCCGGAATTCCGGATAATCGAAATGTGTG 2313218 37 100.0 36 ..................................... ATAGTTCCGAAGCCGTCAAAATCTGAGAAAAACAGA 2313145 37 100.0 34 ..................................... TTTTCAGTTCCACGTTTATCTATGGATTTGTCAA 2313074 37 100.0 36 ..................................... ATGATCGGAGGCATGGAAACAGCCCTGATCTGTACA 2313001 37 100.0 36 ..................................... ATGATCGGAGGCATGGAAACAGCCCTGATCTGTACA 2312928 37 100.0 41 ..................................... TCCGCGGTCTGTGCAAGATCGATAGATGAAAAACTAACGAG 2312850 37 100.0 35 ..................................... TATAAAGATCGTTGAAAATAATAAATTAGTAGAAA 2312778 37 100.0 32 ..................................... ATATTAGTCCGGAACCAGATTACCGGAGAAGG 2312709 37 100.0 36 ..................................... AAGAAAGGATCAATGCAGGCATAAGAGCCAAAAAAG 2312636 37 100.0 35 ..................................... TAGGTAGAATAAGGATGATGGGCTTCATAAGCATC 2312564 37 100.0 36 ..................................... ATCAGGTAACACACTGAAGTAAATCTGCTAGTGGGA 2312491 37 100.0 36 ..................................... CCAATAGGAGAGGATACTATCTTTGCGGTTTTTGCT 2312418 37 100.0 36 ..................................... ATTCGTTTCACTCAATCCCTCTGCGCTGGTTAAAAG 2312345 37 100.0 34 ..................................... CCGTTAAGTTGTTCTCTTCCTCAATCGTGTGGAA 2312274 37 100.0 36 ..................................... AAAAACGCACTTATGGCTTTCCGTTGATGATTCCAG 2312201 37 100.0 35 ..................................... TCATTTTCTTCCCTCTACTCTCTCCGAACCTCGCA 2312129 37 100.0 36 ..................................... ATTAACAACCATTACAACCATCGAAACAGCAGCTAT 2312056 36 94.6 0 ..................T............-..... | ========== ====== ====== ====== ===================================== ========================================== ================== 57 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGTACCGTACTGCCTGAAAAGATTTTCAAATAACACCTTTGTGGGAAAAAAACACCGCCAAAGTAATATTTTTTCTATAATTTTTGTTATTAAAAGACTTAAAACAATTTTTCTATAAATACTTTCCTAAAAAAACGTGTTACGAATTTATTTGTTTCTTAAATATATATAACACTAAAAACGATATTTTTCTCTCTCATCAGCCTTTTGATTGACAGAAACTATAAATGCTGAAAATGAGCCTGAAATTTGATGGTTCCAGAGATTATCAAAAGGCATTATGCAGTAAAATTAAGGTCAAAACCCGAACCCTACCTTGACATATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTCCCAAACCACTAAAAACCCCGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTGACCCGAAAAAAGGGGTGATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TAATATATCACAAAATCGAGAAACTGTCTCTTATCATTCGTTAGCAAGACGGTTAAAAGTTTATTCGGTTTTTGTCACTTCACCTTTTAAGGGTGACTGAAGCTTATCTTTTGTGCCTTTTGCTTATAGTACCTGTACTTTTAATATTTTTTAAGCACTATAGGTAAACTTTTCATACTGGCGTGGAAATATAAGCTATTTAAATAAGAGAAGGGGGACTGATGGAGTTGATTGCTTCCAAAATTACTGCTGTTTTTTCTCTGGTAGCGTTTGCATTTATTCACAGCCTGACTGCTAGCCTGCCTTTCAAACGCCTGGTCATGAGAATTGCCGGTCCCGGAGCGGAAAAGCTCTATCTGCCGGCATACAGCCTTGTTGCAGGGCTGACGATACTGCCACTTGTCTATCAGATCTACAAAAATCCGGGGCGGGTTCTTTACAAAATACCTTCGCCCTGGCGCTGGCTCATGGTTGGGGGGCAGTTAATTGCCGGAATGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 3826793-3821795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009507.1 Methanosarcina siciliae HI350 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3826792 37 100.0 36 ..................................... ACATAGAATGAATACACTCGATATGAAGTGGACATG 3826719 37 100.0 34 ..................................... TTCTTTTATATTTGTCTGTTGCTATATATGCAAA 3826648 37 100.0 36 ..................................... TGATCCTATATATCAATTAAGAATGAAAACAAATAG 3826575 37 100.0 35 ..................................... TCTGACTGGACCGGCCACATACACAATATCAAATA 3826503 37 100.0 36 ..................................... TCTGGAAGCATTGGCATAACTTCCTGGCGTTCAATT 3826430 37 100.0 35 ..................................... CCAATGAGATTGTATTGTATTTGTAATTTGAGATC 3826358 37 100.0 34 ..................................... GGCTTATATGATTCATCATTCTACAATAGTCTGA 3826287 37 100.0 37 ..................................... CCCAATTGGGTGATGCTATGAGTTATGCAGGGCCTGT 3826213 37 100.0 36 ..................................... TATATCCCGCATCCCCCAACGTTTCCCCCTCTTTCT 3826140 37 100.0 37 ..................................... GTGATTATTAAGAAGGGAAAGACCGGGAAAAGGCAGA 3826066 37 100.0 36 ..................................... TTACCTGGAGAAAGATAAAACCATGAATAAAATAAG 3825993 37 100.0 38 ..................................... CAGAATGAAATTTCTGATACAAATGAGGAAATTGAAGA 3825918 37 100.0 35 ..................................... ACAACCGGTGGTATAAAAGTAGATTCTGTAAATTC 3825846 37 100.0 36 ..................................... TACAGAAAGCAAATTCCTCCGTGAGACTGGACAACA 3825773 37 100.0 35 ..................................... CTGGTGTTACGGCCGGATTAACTCTTATGGGAACT 3825701 37 100.0 37 ..................................... TATGAAAGACTCCAAGAATTTGGATTAGAATATCCAT 3825627 37 100.0 36 ..................................... CGTATCAGCTTCCGGCTTTGTCTGATAATAAATATT 3825554 37 100.0 35 ..................................... AGCAAAATTAGGACTCAATAGATAAAAATAGAAAC 3825482 37 100.0 36 ..................................... CATTCTCCTAACCACGTTACACCCTTCAAATTCTTC 3825409 37 100.0 36 ..................................... TGTGATTGAGGATTGTTCCGATTGCCAGCTCCTCCC 3825336 37 100.0 38 ..................................... ATGATTTAGGATCGTCCCGATAGCCAGCTCTTCCCTGC 3825261 37 100.0 34 ..................................... CCAACTGAGCTACAATGGCACTCACGAATACAAA 3825190 37 100.0 36 ..................................... ATTCAGTCTTCTCAACGAGCAACCAAACAAGCACGG 3825117 37 100.0 34 ..................................... CATCTACGGAGGTTATTCACGCCGTCAAAAAGCA 3825046 37 100.0 36 ..................................... TTTTTCGTTGGTACATCCTGAAATTTCTTTGCCTCA 3824973 37 100.0 35 ..................................... ATCAAAAAAGGAAAGTTATAGTATAATAGGATTAT 3824901 37 100.0 36 ..................................... CATTTGTTTTTGGAAATTTTGTATCACGCTTCACAT 3824828 37 100.0 33 ..................................... GAAGTCATTAAATCACATCCTTCAAACTCCACC 3824758 37 100.0 37 ..................................... TACTCTTTTCTGTCAGGTTCTCTTTCGGGTCTGCCAA 3824684 37 100.0 34 ..................................... CTACACTTTCGAATGTTTCGGTTTCAACACGTTT 3824613 37 100.0 37 ..................................... AGAATATTATATTAAGGTACATATAGTATATAGGAAT 3824539 37 100.0 36 ..................................... GTTTCGCGCCCACAAAAAACACACATACCCGATGTG 3824466 37 100.0 38 ..................................... CGATTTTTGAGTAGTTGCACTAAGAACAGTAGGATAAT 3824391 37 100.0 37 ..................................... TTGATCAGGAGGCTTATGAGGAATCCCTTGAAGCCCT 3824317 37 100.0 34 ..................................... CAGTGAGGACATGTATACCAAGGAGAGTTTTGAA 3824246 37 100.0 37 ..................................... GCTGTTGGAATTGGGGAAACGGTGCCACAATCGAGTA 3824172 37 100.0 37 ..................................... AACTCTGTAATATCCCATCGACGGTAAAACCCATCAG 3824098 37 100.0 35 ..................................... CAGTAATGACAGATGGCCTCGAAGACTCGGAAGAT 3824026 37 100.0 37 ..................................... TCGGTGGATTAATTGATGAACTCTCTTCAATGCTAGG 3823952 37 100.0 37 ..................................... TCAACTGTTTATGTAGGATGGAATGAATTTTCTTCTA 3823878 37 100.0 35 ..................................... TCTTTGATGGCCTGCAGTAACTGGATATGTTTTTG 3823806 37 100.0 36 ..................................... TTGAAATGTCGTTGATTATTCCTGACACTTCCGTGA 3823733 37 100.0 35 ..................................... TTTGGCACTTGAGGATTACGATTTCACAGAAATAA 3823661 37 100.0 37 ..................................... TTTGTCGGAACCCGGGCGCGGGGATATATTGACGATA 3823587 37 100.0 37 ..................................... TTATTTGTTTTGGCAATACTATTTTTCACCGGGACAT 3823513 37 100.0 37 ..................................... TCTAAGTGTTTATTGTAATCTGTTAATATCTGGAATT 3823439 37 100.0 35 ..................................... CATACTCATATAATGAATGGAGGGAACTCTCATGG 3823367 37 100.0 36 ..................................... CTACATCATCACGCTGTATATCTTTTATTTTTTCGA 3823294 37 100.0 37 ..................................... CACATACTCAGAAAATTTTGCTGACCAGCAATATGAG 3823220 37 100.0 34 ..................................... GATTTGACACGTCGCCCACTGATGCTTATATCAG 3823149 37 100.0 35 ..................................... CTTTTACTGTACTCGTAGACGTTCCGTAATTATTT 3823077 37 100.0 34 ..................................... ACATTATTATTTCTCCTTTAATCTATCTTTTAAT 3823006 37 100.0 34 ..................................... GTTCACCCTTTGTCTTATGTTATACTATACTATA 3822935 37 100.0 37 ..................................... TTCATTTGAAACGCCTCTTAATCTGCTGTAAACTTAT 3822861 37 100.0 37 ..................................... CAAAATACAGTATGCCAGGAAAGGGATGATAGAAAAG 3822787 37 100.0 37 ..................................... CCAGGGAGAGGATCAAAAACACTGCTGATATTTTCAA 3822713 37 100.0 38 ..................................... CACCCTACCAGCTTAGACAGGCTCCTCGGTATCGACGT 3822638 37 100.0 36 ..................................... CAGAGGTTGAATACCCAATAGGCAGAGTATTTACCT 3822565 37 100.0 37 ..................................... ATCCTCTTGAAATAAGTACTTCCAATTGTGGTATTAA 3822491 37 100.0 36 ..................................... ATATGTCACAGTGGGATAATAGATACTGAAAATTGG 3822418 37 100.0 36 ..................................... AAATATGGAAGTACTAATATAAAAAAGTGTAGAGTG 3822345 37 100.0 36 ..................................... CGTCTTCACTATTAATAATCATCATATATTCTCACT 3822272 37 100.0 34 ..................................... CAATACCCTTTCTCGTCAACATTATCGCACGGAG 3822201 37 100.0 36 ..................................... ATGTATCCAGTTTTTCCACCAACATAATAATCAGAT 3822128 37 100.0 39 ..................................... ATTTCTGGGATATACGACTGTAATATTTCTTCAACTTTT 3822052 37 100.0 34 ..................................... CTCAAATGAGTCTGCAAATGGGGGTAGGATCAAT 3821981 37 100.0 38 ..................................... CGCGACGTTCGCGGATATCCGGGACCACGTCCCAAAAG 3821906 37 100.0 38 ..................................... GTTCCCATCATACATGTAACATCCCCTGTATCAAGAAA 3821831 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 69 37 100.0 36 ATTCGAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGAAGTTTTTATTGCTTCAAAGCAGCACCATATCAAAGGGATCGTGGACGAAGTACTGTTTCTTGAAGACGGAACTGCCGCTCCTCTTGAATACAAATTTGCCGAATACAAAGACAAGATTTTTAAAACCTATAAATTCCAGCTGGTTTTACAGGCGCTTTTGATCCGGGAAAATTACAATATCAAAGTAAACCGGGCATATATCTGTTTTACTCGTAGCAACAGCCTGGTCAAAGAGATGGGGATTACCAACTCTGATTTCAAAAAAGCCGAGAAAATTATCGAGGAAATAGTCGAGATAGTTCAAAAAGGCTTATATCCAAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTGTCTCCGAAAAAGGGCTTATTTCAGGCCTTTTCTGGCCAAATAACGGAAAATTTTGCCCT # Right flank : AATTTTTCTGTTGATACTCTACAGGCTCTAGTTTGGCAAATTTGAATGTACATTTATTTATCATATTATAACATATTATAATATATGTCTACGATAGCTATAGATCCGGATGTAAAGGAATCACTTAAAGAGTTAAAGTTAGCTCCGGAAGAGTCCTATAATTCGGTAGTTAAAAGACTTATTAGCGAAATTAAAAAGAAAGAAGACTATAAACCTATGTTTTCAAAAGAAGGAAAACAAGAACCTGAGGAATCCCATATAAAAGATTTTAATGCCTGGTTAGAAAAAAAGCTGGTGGAAGATAAGAATATTTTAGATGCACTTGGAAGAAAGTGATGCTTTGATCAGTTTAATTGAAATTTTGAAAATTCATCAAATGGTCATAGATTACGATAAATTTAAAGATCCGGATGATTATACCTCTGCAATACGTTCTTTAGCTACGTTAGAATTAATGTTTGAATTTTTAATCAAAGGATCCAATACTATTTTCGAAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 5 4343844-4346147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009507.1 Methanosarcina siciliae HI350 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 4343844 37 100.0 35 ..................................... AGATATAATTTGATAGGTGGTTTTTGAAAATATGG 4343916 37 100.0 39 ..................................... TTTTAATTTTTTTAGTAGTATAATAATATTCTATCCCTG 4343992 37 100.0 36 ..................................... AACAAATATCTGACACTCTCAATAACGCATCATTAA 4344065 37 100.0 36 ..................................... TCCAGTCTTAGACTACAACGAGGAAACAATCATGTT 4344138 37 100.0 35 ..................................... GTGATTATTATTTCAAATATACCCAATATCTGAAA 4344210 37 100.0 36 ..................................... TCAGAAAACTGGATCGGATGGTGCGGTCGTGTTTTC 4344283 37 100.0 35 ..................................... TAAAATGTATTGTGATGGACATGGATATCTGAGGG 4344355 37 100.0 37 ..................................... ACTATCTCGTATGATGACTTTGACAGAAAAATTGAAA 4344429 37 100.0 36 ..................................... GACAGTGAAAGAGAAAAACCCTCAGAATCATTAACA 4344502 37 100.0 34 ..................................... CTATCGGGTACAAGGACCCGAACAACAATGAATA 4344573 37 100.0 37 ..................................... CGGCGATTATTGTGACCGCCGTGTACAAGTTTTTGAT 4344647 37 100.0 36 ..................................... CCAGCTTTGCAACTACATCCAAAAATAAATTAACAA 4344720 37 100.0 36 ..................................... ATAGTCCTCAATCAAGCAATGAAAAAACATTTTCTT 4344793 37 100.0 37 ..................................... TACATGCAGCCCCGACATCCCCCTTCCCCCACATCGA 4344867 37 100.0 35 ..................................... TTGTTTCGATTAAACTATTAATGGGGGGAGTAAAG 4344939 37 97.3 37 ........................A............ TTGATTCCATACCCCCCAATCCCGCTCTGCCGTCCAG 4345013 37 100.0 35 ..................................... CGGTAATGGGATTGCAGTATCTGAAAGTAACGCAT 4345085 37 100.0 35 ..................................... TTAAAAATAATCGAACAGTTAAACGAACATGAGAA 4345157 37 100.0 36 ..................................... ACATCAGCAGAGCCTTTAAACTGAGTCAGGAATTGT 4345230 37 100.0 37 ..................................... TCTCCGGAAAAATAAGCATAATGGTGCACGTATATGA 4345304 37 100.0 43 ..................................... CATCTACATCGTATCTGAGCATCGCAAAGACTTCAAGGACTTT 4345384 37 100.0 39 ..................................... CAAAGAAGTGAGGTCTATAATATGGCTCGAAGATATAGA 4345460 37 97.3 35 ........................A............ TAAATTCTCCATCTATAAACAGTTCAACGATTGGG 4345532 37 97.3 35 ........................A............ TTTACATGAGTGATATTATCCCCTCTGAAAAAAAC 4345604 37 97.3 36 ........................A............ CAAGCTGTCTCTATATTTGGCTCTTCGTGTTTATGT 4345677 37 97.3 36 ........................A............ CTAAATATCGACAAGGAGAAATATAAATGGGAACAA 4345750 37 97.3 36 ........................A............ CTAAATATCGACAAGGAGAAATATAAATGGGAACAA 4345823 37 97.3 174 ........................A............ TGGTAACTATGACGCAAAGATTCCCGCAGAACTCACCTTACTAGGTGCATCAATGCCCGTGAAAGATCCAGGTGTAGGCCAGATAAAAGCAGGCGCACAGGGAATACTTATCGGTAACGTAATTCAAAGCGTAATGAAAAACAAAGGACTCAGCGGAAGCGGGTCTAACTTCGG 4346034 37 94.6 40 ...A....................A............ ATTGTTCATTACATTCACGATATCATTGCAAACATCCTGA 4346111 37 83.8 0 ......................T......G.ACC.C. | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================== ================== 30 37 98.7 41 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCTAATCACCCCTCTTAAACGTCATCAGTTGACACGATCCACTCTAATCATACCAAATTGAAGATATCAGAAAATATTTCTTGAAAAACCGTTTTCAGAACTATTCTCTGTTCTTGAAATTTTAGAAAGATGCACTCCATTTTTAGAGATAAATTCATTCAGGATTAGGACCTCAAGGTCTGGATCCGGAGGAAGGCCTTAACCAAGTAGTCGGCAATTGTCTGGGCCAGATCCTTGGTTTCCTCTAGGAAGGCCTTCCACTTGGCAGTTGCAGCTATCTAAGAAAAAAAGAGATAATACTTAAATAATTCAAAAAGACTTATATCCCAAGACATTCACATATTCTATAAAATACGTAGATCGCTGTTACCTGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTACCCCCTAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAACAAAGGAAATTTTTGCTCT # Right flank : CACAGCATTAATTATGTATTCGAGACTGACCAGGATCTCCCCAGCTGTAGGACCAACTCTTCTAGGACTTTCCCAGGACCATGACCCGGAGATAAAAACATTACCGTTAGTTTTTAACGGCAACGATGCCAGGACCAAGACCTTGCCAGCAGGATCTCGAGATCTGGATCTGGAGGAGAGCCTTAACCAGGTAGTTGGCATTTTGGTCCGGACCAGATTCTGGGTTCCTCCAGGAAGTCCTTCTACTTGGGAGCTGCAGCAGTCCTCCGGGAAGATCTCTGCAGGCCAGGACCAAGACTTTCCCGGGCCTTAGGATCCTGTAGGTCCTGTAACATTATTTCCCGGAAAATAGTCTGCCAAAAAAATTTCCTTTGCCTTCCCTGGAAGTGTCTGGGTCCGGGGGAATATCTTCCTAGCCCGGGGTAAATTCTTCCTTGCAGCTGCACATAAAAACAGCATCAGTGACAGTTATATTCGCGAATCTAAGGAAGGCCTTCGAG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGAGAGCAAGATCCACTAAAAAAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //