Array 1 102527-100296 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOJ01000003.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_3_length_166871_cov_108.511_ID_14643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 102526 32 100.0 35 ................................ TTTTCAAAAACATGAGTATAACAAATGGGCAAAAA 102459 32 100.0 34 ................................ CCAGATAAAAGAACTTAACCGTAGAATTTATGAT 102393 32 100.0 36 ................................ GCTACAAAACAGGAGGTAAGATAAATGCAGAAAACA 102325 32 100.0 35 ................................ ATGGAACAGCTTGAAGATTTGGAGCAAAGCGGTAA 102258 32 100.0 35 ................................ CCGGCGTGGATATGTCCCTGAAATAATTGTTAATC 102191 32 100.0 34 ................................ AAGCAAACGGATGAAATTGACGGCACAGTCTTTT 102125 32 100.0 34 ................................ TTTAATTGTTTATATTCCTCGCTTGATATACCAA 102059 32 100.0 35 ................................ CATTTAAAGCTGCTCTAAAACCTGTTCCATCCCAC 101992 32 100.0 35 ................................ TTTATAAGATCTGCCGTAAATCCGTTTCCATCTCC 101925 32 100.0 37 ................................ TGATTATCCTGTCAACTCCGATAAATGGCAGTATCTT 101856 32 100.0 33 ................................ TTCCTAAGCCAAGGGATGGAACTGCCAGAGAAT 101791 32 100.0 33 ................................ ATGTACAAAAAGGTACACTTACGGAGGAAGAGG 101726 32 100.0 34 ................................ CGGGTATACCAAAAATCCAGGAGTAAAGCTGGTA 101660 32 100.0 34 ................................ TGAATTGTTTAGAACTAATTTATAGTCAGCTTTA 101594 32 100.0 34 ................................ ACTTGATATGCCGATATAATCAGGCCTACTTGAT 101528 32 100.0 36 ................................ TGTTATTTCTATAATACAATTCTTGCTTTGCTCTAT 101460 32 100.0 33 ................................ ATGTACAAAAAGGTACACTTACGGAGGAAGAGG 101395 32 100.0 35 ................................ TGTTATCCGCTTTTGCTGTTGATCTTGATTTTTGA 101328 32 100.0 35 ................................ ACATTCGCCATTTTGTACATTTGCGCATGGGCAAC 101261 32 100.0 36 ................................ CTGTTGTAGAACTTAAGAAAAGTATTAATGAGCGCA 101193 32 100.0 34 ................................ GGCAATCAGAGAAGCAGATGATATACATGCTGTA 101127 32 100.0 33 ................................ AACGCTCTCAAGCCAAGCATAAAAATCTTCGAT 101062 32 100.0 35 ................................ ATTGAATATGTGGAGCAGACACAACCCAAAAAGCA 100995 32 100.0 33 ................................ ACAGCATCATCTTGCAAAAGAGGGCGGCTTGGC 100930 32 100.0 34 ................................ TCTTTCTGAGGGCGATGTAACTAGGTATTTCATG 100864 32 100.0 36 ................................ GAGGATATTTTTATCCACAAACAATAATTATACAAA 100796 32 100.0 36 ................................ TAGTTCCAAAACATGTCACATACATGATTGTCTATA 100728 32 100.0 35 ................................ ATAAATGGACTTCTATAAAAACCGGGAACTCTATC 100661 32 100.0 33 ................................ GTCTATAATTACTACGATATACGGTAAAGCCCT 100596 32 100.0 35 ................................ AGCCTCAGCAGATTCTAAAGCACTCTCTCTTGCAA 100529 32 100.0 36 ................................ TGCTGTTGTAGTATTATACATTTTGGCAAGTTCGTC 100461 32 100.0 34 ................................ ACTGGTAACCTTATGACCCGGGGTTTGTCTATGA 100395 32 100.0 36 ................................ ATTGATAGGCTCATCACCGACAGCCTTCCGAATGTC 100327 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 34 32 100.0 35 GTCGCACCCTGCACGGGTGCGTGGATTGAAAC # Left flank : ATATCCACCATTTTTGATAAAGTAGAGGTGGTTTGCATGATGGTATTGATCACATACGATGTTGACACTACCACTTATGGAGGACAAAGACGTTTATATAAGGTTGCCAAAACATGTGTGAACTATGGACAAAGAGTGCAGGAATCTGTTTTTGAATGTGTGCTAGAACCTCATCAGTATATAGAGCTGAAAGCGAAACTTGAGAAACTGATGGATATTGAGAGAGACAGCATAAGGTTCTACAATCTGGGGAGCAATTGGAAACGTCGTGTGGAGCATCTTGGTGCGAAAAAACCTTATGATCCGGAAGGTGTTATAATCACTTGAGTTTTCCGCGGAACCCAAGTGAACATGTTTTTGCGGGGAAGTCGCGGAAGTCTGATTTTCAAAGGTTTCAGAGTCTTTTGCTAATTTTTTGAAAAGAGATTTTGCATCATTTTTTAAGATCCGCGGAAATATTGCATAGAAGTGCTGATATACCTGCTTTTGAATATAGTGCA # Right flank : GTAGCTGATACCAAAGCTACGGCTTTGTCAATGAGTTGCATCTCGTAAAAGGTGCATAAATTTAAAATGTTGACAGCGTGAATATAATTGATTAGAATACATCGCAATCCCTATGGAATGTTGACTGAAATGTTATATAATGCAAATATAGAAACATGGGGAGAAGGTAAGCGATGAGCAAGGTATATGAATTTGAAGCTGAGATTAAAAAAGTGCCGGATATTGATGGTGCATATATTGAGATCCCCTTTGATGTGAAGGCTAAATTTGGCAAAGGGCGGGTATCTGTTACTGCAACCTTTGATGGCGAAGTATATCATGGCATGCTTGTGAGAATGAAAACACCATGCCACATAATAGGCATACGGAAAGATATCAGGGCGAAAATAAACAAGCAGCCAGGAGACAAGGTTTTTGTAACTATCAGGGAAAGAGAAGTCAAAAAATAGGAGGAAGTTTATTGGAAAGGAAAAGTCTGTTTCAGTGCCCTGTGTGCAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 40445-40216 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOJ01000040.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_40_length_40750_cov_138.547_ID_14717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 40444 30 100.0 37 .............................. ATGAAGATATTTCTGAGGATGTGATATAAATGGCAAT 40377 30 100.0 36 .............................. GCGTAAACACTTTCGGGAAGGACACATAGCTTAACC 40311 30 100.0 36 .............................. TCATCATTTTTGTAAATATCTGCATCGATACAGTGG 40245 30 93.3 0 ...........G....A............. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 37 GCTTTAATCGTACCATGTTGGAATTGAAAC # Left flank : CAAGCTGCTGCACTTTTACGTGGCAACTTGCTGTACTTTTATTTTACAATACACAAAAATAACCCAATCGGACTCAGTTAGAATTTTTATGTCTCGGAAAAAAGATGGCTTTCAAAAGGCGTTATAGGCAGAGAAAAAATCCCAACTGATAACTTTATTCAAAACTTATGAAGAATATGGTACAATTGCTATTATAGAGGGAATGAAATCATGAAGGTACAGTGTTTTTTGCACGACTGGAGGTTCATTGCAAAAATAAGTGTTTTCGACACCGGAATGCCTTGAAATATGCGCATTTCCGTCGG # Right flank : ATCATAGTATCTGTTGAAACGTCAATTAATTCAGAAGGCTTTACTCTTACCACATTGTAATAAAGCATTTAATACTCATTTCCTGTTTTAAAGTCCTATTATCCTTGATATCAGCCATTTTACACCTTTGCAAATCATGGTTAACATCTGAAATATTTCGCACCCTTTAATACCCTATGTAATATATTGGTGGTGAAGGATAAACTCTTGAGGCTGAGCTGGTTGCTGTATAGTGAAATTCGGCTCATGTTCGTCAATTGTTTGCAGGAGGTGTTTGCGCTGGAATACATAGTTGAAATCAACGGCCTTGGAATGAAGTACCAGTCTTTGAACGGCGAAATCAATGCAATTGAAAATATCGACCTATCCGTAAAAAAGGGTGAGTTTATCAGCATTGTCGGCCCCAGCGGGTGCGGCAAATCTACGCTCTTGTCAATAATATGCGGGCTTCTTACGCCCACATCCGGACATGTACTGATAAACGGCAAGAGTCTGAGGGG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAATCGTACCATGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 128961-129509 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOJ01000006.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_6_length_138388_cov_136.454_ID_14649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 128961 30 100.0 36 .............................. ATGGAAATAGTTGCTGAGGGTGAATTAGTAGAATTG 129027 30 100.0 36 .............................. CTTTAAGTTAAAGTAAAAGTTTTATCTTATAATCTC 129093 30 100.0 37 .............................. ATGAAGATAAATAAAGATGGTGAGGTTAAAAGACATA 129160 30 100.0 37 .............................. TCAACGACAAGCTTAATTACGTCATTAAAATATGCTT 129227 30 83.3 38 .C.......T.....TA.........C... AAAAAATAAGCCCGGATAATCCGGGCTATTTTTACAAA 129295 29 80.0 36 .....-.CA......T.C..A......... ATACCTATGCACACAACATAAAATATGATAAAATAA 129360 30 86.7 24 A...............A......C.....T TATTTTAATTATTAACTATGTATT Deletion [129414] 129414 30 86.7 36 ..........A....TA........A.... CTTATTTTATCATATCTTTTAAAGTTATTTTCTTTC 129480 30 80.0 0 ...C.....A.......A....G.C....T | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 90.7 35 GTTTTAATCGTACCAAGTTGGAATTGAAAC # Left flank : ATAGGACGCTTATCAGACTGGAACTTTATAAGCTTATAAAACATCTGACCGGGGATCAGAGTTATGAAGGATTTAAAATGTGGTGGTAAGATATGTATGCATTGATTGTCTATGATGTTAAAGAGAAAAGAGTTGCGAAAGTATTGAAATTCTTACGTTCCTACCTCAATTGGATACAGAATTCGGTATTTGAAGGGGAAGTAACAGAAGCTCAAATGCTGAAGATAAAAAACCACCTTAGGGAGATTATCGATGAAGATGAGGATTCGGTGATAATTTTCACATCTAGGGAAAAAAGGTGGCTTTCGAAAAGCATTATGGGGAGAGAAAAGAACTCGACTGACAATTTTATTTAAATACCATGAAGAATATGGTACAATTGTTATCCAAGAGGAAATAAAATCATGAGGGTACGGTGTTTTTTGCACGACTGGAAGTTCATTGCAAAAATAAGTGTTTTTGACGCCGGAACGCCTTGATATATGTGTATTCCCGTCGGT # Right flank : TATATGTTTTGAGGGAATACTATAGGAAATTTATTTTTATACCGTATTATAATTATTAACTCATAAAATAAAGAATAAAGAAGGGAAAATGAGGAAATATAGAAATAATAAACCATAATGACTTATAAAAGCGGTTGGATGAAGTTACTGCGGTTTGATGGACACAGAACATGGCTGGTATAATAAAACCAGAACATATGGAGGTGTCCATCAATGAAACGCTTTGATAAAAATTTTAAGATTGAAGCTGTGCGCCTAATTTTAGAACAGGGATGCAGTGCTTCAAGTGTAGCAAAAGAACTTGATATCCATGAGAATACAGTTCGCAGATGGGTAAGAGAATGCAAAGTGCATAGTGATGATACGTTCCATGACAGTAGTAACTTAAAACCTCAAGATGAGGAACTGAGACAACTTAAAAAGCGCATTGCTGACCTTGAGAAGGAAAATGTCATTCTAAAAAAAGCCACTGCAATCTTCGCAAGATGCCAGAAGTAGCC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 137900-138194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOJ01000006.1 Pseudoclostridium thermosuccinogenes strain DSM 5806 NODE_6_length_138388_cov_136.454_ID_14649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 137900 30 100.0 37 .............................. TTTGATTTTTCTTTTCTATTATTTCTTATATCCGATA 137967 30 100.0 36 .............................. CCTAACCACCCTGAAAGTTAACACAGGGTTACTATT 138033 30 100.0 37 .............................. CAAGAAGCCACATCATCAGTAATTACCCTGCCCAACC 138100 30 100.0 35 .............................. TTGTTAATCTTATGCTTGGACTGTGTGCCGGAATC 138165 30 86.7 0 ..........................CGTT | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTTTAATCGTACCAAGTTGGAATTGAAAG # Left flank : AACTATAAAATGGTGAAAGCTAATAAAAACTATACTTTATACGAAAGATCATGCTAAGTATGCATCCTTGGTCTGGTCCTGTTGCTGGGAGACTTTTGACTATAAAGTACTCTCAGCTATATTTTTATTATATTGTGTTGAATCATGAGCCATATAGAATTTTACTGAAAATTTCTTTATAACAAGATATATACCAATGGAAAACACATGGAAAGTACAGGTATTCATTGTATGAATTATATATAATTATCTACAACATCCTGATAAAGACTCAGTGATTATTTTCGTGTTCCGTAAAAGGAATTGCTTTGAAATGTATTAAGGGGATAGAAAAACACAACTGACATTTTATTTAAACCTCATGAAGAATATGGTACAATTACTATTATAGAGGAAATAAAATCATGAAGGTACAGTGTTTTTTACACGACTGGAGGTTCACTGCAAAAATAAGTGTTTTCGACGCCGAAATGCCTTGATATATGTGGATTCCCGCCGGT # Right flank : CGATATGGTCCAACCAGTTTATGGAGATAGGATATCCTACAGCAATGGCTGTTTTTGAAATAGATTTACTGAGAGTTCGGTAGGTCTTTATTCGCTCGTATATAGTTGCATTACTGATATGGTAGCAATGCAAAATAACTGTGTTTTGTCAACTAGAAATGCATCAAAATGACAAGAAAAATGCAGCACCCAAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //