Array 1 5388-5126 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKJ01000288.1 Micromonospora sp. KC207 NODE_288_length_8871_cov_16.0802, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5387 37 97.3 35 C.................................... GGCGACCTCGACGCCGCCACCCGCTACGTCACCCA 5315 37 100.0 38 ..................................... GCCATGTCCGTCTCCCTCGCTCGCTTGCCTGTACCCAT 5240 37 100.0 40 ..................................... GACGCGATCGGCGACCCGGACGCCTGTCCGTGCTGCCACC 5163 36 81.1 0 .................A..GT....TT..-...C.. | A,C [5140,5147] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 94.6 38 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : GATCTTTGTGACGCCGACGGGGTTGGCGGAGTGGACGTAGACGACGCCGATGTCGAGTGGGTGTCCCTCGAACGCTGCTTGTTCCAGCAGTTCCACGACCGGCCAGATCGTGTCGTTCCCGCCGAGGTCGTGGTCCAGCCATAGCTCGTCCAGCCGTCGGCCCCGGTACTGGTCGAGGAGTTGGACCCCGGCCGCGCTGGTGCGGGCCACCTCCGCCTTGCGCCCGTCCACGAAGGACCGGAGATCGTCGACCAGAATGACCCTGACCTCGCTGGCATCCACCTCCGGGATGATGCCTGAAGCCGTCCTGCTCCGGCGCCCGGATCTGCTACGGATCGTTTGCCGACCTCGTGTTCCCTATCTCTTCCTAGCGTCGTAGGTAGCACGCGGCAAGGGGGCCGAGGTGATGCCACAGCCGCCGTGCGGTCAGACTCATCGGCTTCTCAGCTGGTACCGATCTTGGAGCGAGACGTGGCACTCTCCCACGTCTACGGAGAGGA # Right flank : CATCGGAGTCAACTATTCCAATCAGCAAATTAGGGACAAGGGTGGCTGCAACCCCTATGCACAGGTGTCGGCTGGCGAGGTCGGGGTGGTTGTGGCAGGCGGTGAGGCCGATCTTGCAGGCAATTATCAAGTCGGGGTCGCCGGGGGAGTTGGAGCAGCCTATACTCCCTTCCCACCGTTCGCCTACACGGTCACAACTGGAGTGTCATGCGCAGACGCATTCTATCTAGTCGAATACTAAGGGTGAACTGTGGTGAATGATCAGTCGGCGAAGTCGAAGATTCGGCAAAGCAGGCGATGGCGCGCCGCCGTCCTCGGGCTTCGGATCGGTGTCGTGAGCATGCCGATCCTACTCGTCCTGATGTTGGCAGGGCGCGTTGCCAGCGTTAAAGATTTTGTCGTGCCAATCGTCTTCTTTATCCTCCCTATCACGGTAATCTCTATTCTTGTCGGATGGTTGAGTGTGGTGCTTCTAGTTCGAGACACGAGCCGTTACACGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8591-7450 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKJ01000288.1 Micromonospora sp. KC207 NODE_288_length_8871_cov_16.0802, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8590 37 100.0 35 ..................................... TCCGATCAGGCTGGCCTGGACGTCGTCCGCGCTCG 8518 37 100.0 37 ..................................... TCCACGTTTCTGCCATGTCGTGGGAGTCTCAACTATG 8444 37 100.0 36 ..................................... CCCGGCAAGCCCTACTGGCCCGCCGGCGCCACCCGG 8371 37 100.0 36 ..................................... GCCGAGCAGCAGCTCGTCGACGTCGAGCGCCGGCAC 8298 37 100.0 38 ..................................... GACGTCCAACCCGGATCTCCTGCCGATCGAATGGTCGC 8223 37 100.0 35 ..................................... ACGGTCAGGTAGGCGACTTGCACCTCGGTGGCCTG 8151 37 100.0 35 ..................................... TCCGGCTCCGGCTCCGCCGGCGGCTTGCGGCCCGC 8079 37 100.0 39 ..................................... CGCGCTGGCATCGGCCGTGCGGTGACTCCACCATGCCCA 8003 37 100.0 37 ..................................... ACGGCCCACGCCGAAACACTGAGCGGCCCACGACCAG 7929 37 100.0 35 ..................................... GATGATGATGGTGCGGTCGAGCAGGGCATCCGCTT 7857 37 100.0 37 ..................................... TCGCGCAGGCCGCGCTCGCCGCCGTCTGGATGACTGT 7783 37 100.0 37 ..................................... TGGTCCGGGTCGGTGGCGGCGATGCGGTCCAGCTCGT 7709 37 100.0 37 ..................................... ACCGGCACTGTCTACCGGCCCGGCGTCGACGCCGGGT 7635 37 100.0 38 ..................................... GGCAAGGAGACCGTGCAGCGGGTCCGGTACGTGCAGTC 7560 37 94.6 39 ..........A.................A........ CTCGGGCGTGGTCGTCGGCGGTACCGCGATCGTCACCAT 7484 35 83.8 0 .......................A-.T...-...CC. | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 98.6 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : GCCTGGACCACTACGAAGGCCGCACCTGGCAAGGCTGGCACCACCACGTCACCCTCGTGGCCGCCGCCCACGCCTACTGCACCCTGCAACGCCTCGACCCAAAAGCCCCCGCGCCGGCCTGAGCCTCTATGCAGTACTCCGCGAACTGCAACACCTACTCGTCCGCCTGGCCGGCGCCTGCCCCACCTGCAAAACCCGCTTCCCCGCAAGACGAAAACCCCGACAACGACTCCGATCATGACAAAGCACTACTAGGGAGCAGCATGATTGAATACACCAC # Right flank : TGGCGTGTTGTTGCGGTTGTTCTCGTCGGAAGTGGGCATCTCAGCAGTTTCGGCGTCGGTCAGCCAGCGGTCGTAGTTCAGGTGGTCCCAACGGGACCGCAGCCACTGGCGCTTGGTGTTGTTTGCTGTTCGCCACTGGTATCGCAGCCCGTCGGCGAGTTGATGGCGCCGCTGCGGTGCGAGGAGCCCTGGAAGTTGGTGGCAGATGTCGGCGATCATGATCGTTCGCTCATGACGTCGGGCCAATGCGTCCGCCGGGCGGGCTTCGAGGAGCGACGCGGTGAGAAACCGGATCTCCAGGAAGCCCAGGTGGAGTAGGTCCGCTGTCGCTGTCTCCATGGCAGCCTGGAGCGGCTCGTCTGACTCCATATCGACCTACTCCGGCCACAGACTCCTCGGTCGTGTCGGGATCGAGGAGGAACCGTGCCACGAATGTCGGTTCCGTGATGGTGACTATGGATCGGTGGCGCCTCTGAACGCCAATCACGGTTGGGTTCGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.20,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 812-4677 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKJ01000101.1 Micromonospora sp. KC207 NODE_101_length_20248_cov_14.3935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 812 37 100.0 36 ..................................... TTGGCGGCTGTCTTCAGCTCGCGGCCGGTCGTCGTC 885 37 100.0 36 ..................................... TTCGGTTTCTGTCGCAATTCCGTCGCGACGTCGACC 958 37 100.0 36 ..................................... CGCACCGTCGGCGACGAACCGTGTCGCATTTCGCGT 1031 37 100.0 38 ..................................... TACGCCACCCACGACCTCATCGGCATCAACGGCCTCAA 1106 37 100.0 34 ..................................... ACTGGCGCGAGGTTGCCCGCACAGAGGGCGTGTT 1177 37 100.0 38 ..................................... GACCTGCCCGGCGCCATCGTCGCCACGTCCCTGCTGGA 1252 37 100.0 36 ..................................... GGTAAGGACGGCTCCGACGCCGATTCGCTGCCGGAG 1325 37 100.0 36 ..................................... GTCCCACTCGCTGCGAGTGATCCCCTCCGGTCGGTC 1398 37 100.0 36 ..................................... CCGTCGGGGGCGAAGTAGTCCGTGTTGTGGACCGGC 1471 37 100.0 36 ..................................... ACCCGGGACTGCTGGACCAGATCCTTGTACTCCCGC 1544 37 100.0 36 ..................................... CGCCTCAGCCAGTCGGGCAAGCCGTACGGCCCTTTT 1617 37 100.0 38 ..................................... CACAGACCGACCCGGTGAGCGTCCGCCAGGTCCGCCGT 1692 37 100.0 38 ..................................... CGCATGACCCCGGTGTCCTACTGGGAGCCGACCGCCCA 1767 37 100.0 35 ..................................... CACGGCGGACGGGGCGGGGGCGCTGCGGGCGGGGG 1839 37 100.0 37 ..................................... CCGGCAAGGCAGTGCCGCCACCGGGGCAGTATGCGGT 1913 37 100.0 35 ..................................... CTTTACGCGGGACAACTGTCTCGCGGGAGTGGCAT 1985 37 100.0 37 ..................................... CTCGTTGAGGCTGTCGCTCTTGGCGGCCGGCCGGGAC 2059 37 100.0 37 ..................................... TGCCACGCGACGATCCGCTCCACGCTGTCGTCCGGCT 2133 37 100.0 35 ..................................... TGGCCGGTGAGGGGGTAGAACGCCTCGGGGTCGGT 2205 37 100.0 38 ..................................... CTCGATTACCACCGCCGTTGTTACGACAACGGCACCTT 2280 37 100.0 36 ..................................... AAGGCGGCCCCCGGCGCACTGCCGGGGGCCGCTCGT 2353 37 100.0 36 ..................................... GTGGTCCGCGTAGGCGGCGGCAACGTACAGACGGTT 2426 37 100.0 39 ..................................... CCGTAGACCGCCGGGGTCGGGGCCGGAGGCTGCGGGATA 2502 37 100.0 36 ..................................... ACCACCGCGAGCTTTGGTTCCTGGGCGAAAAGCCGC 2575 37 100.0 36 ..................................... ACCACCGCGAGCTTTGGTTCCTGGGCGAAAAGCCGC 2648 37 97.3 36 .....................A............... ACCATGCGCAACGCCAGGCGGGCCGCCGGGTCCTTT 2721 37 100.0 36 ..................................... GTCTCCGGTATCCGGCTCGTCGTCGACCCGATCGGT 2794 37 100.0 36 ..................................... CTCCTGCCGCACCCGCTCGCGCAGCGCGATTGCCTT 2867 37 100.0 36 ..................................... CGCCAGTCCGGCGGGACCGGAGCCACCTTATCCGGC 2940 37 100.0 35 ..................................... ACCAGGTCGTCCAGGTGGCGCAGCGCGGCAACCTG 3012 37 100.0 37 ..................................... TCGGCAGGTGTCGTAGCGGGTGTCATTCTTCGGCAAT 3086 37 100.0 37 ..................................... TGCCGGTTTCGTAGCGGCGCACCTGCTGCAAGGAGCA 3160 37 100.0 36 ..................................... CCCAGAGCCAGCGGGAGAACATGCCGATGATGCCGC 3233 37 100.0 37 ..................................... TTCCCGAAGCCGGAAATCACTGCGCGCATCGTTGCCC 3307 37 100.0 39 ..................................... GACGTCCTCGATTGACATGCCGCGGTCTTTCACGGCCTC 3383 37 100.0 38 ..................................... ACTGACATCCCTACTTCCCCTGACGACGACATGTGCTT 3458 37 100.0 36 ..................................... ACGGACAGCCGCGGTCGCCAGTGGCGGCTGTCCAGC 3531 37 100.0 37 ..................................... AACTCCGGCGGCGGCGGCTCGTAGAACTTGAAAATGT 3605 37 100.0 37 ..................................... GCTGCCGAGGGCTGATCGAACCCCGCTGGGGCTGACA 3679 37 100.0 36 ..................................... GCCGCCACCGCGACCGTAGCGGGCACCGTGGCCGGC 3752 37 100.0 35 ..................................... TCCGACGGGTCGGCCCAGCACGACAGGCCGATCTT 3824 37 100.0 38 ..................................... ACGAGGTTCCGGCCGCCGACCGTGTACTGCCACACGGT C [3830] 3900 37 100.0 36 ..................................... CCGCAGCGCGCCCGCACGCCCCGCGTGGTCTGGCGG 3973 37 100.0 35 ..................................... TGGATGCGCCTGGCCAACTCGCTCTTGGTCAATCC 4045 37 100.0 40 ..................................... ATCTACTACCGGGGGGCGTCGTGACGACGGTCCGGGTCGG 4122 37 100.0 38 ..................................... ACAAGCTCACCGAACGCCTCGGCGGCATCTACGCCCTC 4197 37 100.0 35 ..................................... GTGGTGATGGCCTGCAAGATGACCCGGGTACGGCG 4269 37 100.0 39 ..................................... GTCCGCGTTGTCGGACAGGTCCGTGAGCACGTCGCCGAT 4345 37 100.0 37 ..................................... AGCGCCGGCCCGTCGGACAGGTCGGTGCCGAACACCA 4419 37 100.0 38 ..................................... GGCGCTGTCCAAGCGCGTGACGTCGACAAGCGGAAGGT 4494 37 100.0 35 ..................................... CGGTGGGGCTTCAACCAAATAGCGAAGTTTTGGAA 4566 37 97.3 38 ..................................C.. GCCGCGTACAACCTGGTCATCTACTCCCAGGGCGCGGC 4641 37 78.4 0 ...............G.AAG...TT....G......G | ========== ====== ====== ====== ===================================== ======================================== ================== 53 37 99.5 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : GCCGACACGTCATCGACGCCCACACCGCCCTCGCCAACCACACACCCGACCCGACAACCCGACTACACCACCTCCAAGACGCCCTCCGTGTCGACCCCTACAACGAACACCTCCACCATCTAGCCGCCGACACACTCACTGCACTCGGCAAACCGCAAGACGCCCAGAACCTCCTCGCCCGCTACCACCAGAGGCTCGCGGAAGCGGCCCCAGCGAAACCCTGACCAACTCGTAGGCTGCACGACTTAATGTGATTCATTGGTACGCGGCCTGCCTTCGGGTCGTAGTGGTAGTACGGGACTTTGGCCCTCAGGCAACGCACCCGGCTCGTCCGCTTCGTGCGAGGTGGCCGGGCGGGCCTCTTCGTGATCTAGGAACCTGTAGTGAACACGGAATCCCTGGGAGGTTCCGAACTGCCAAAACATGCCAAGAGCACCAAAAGGTACCTGCTGGAGGGGCGTCGTTGAATGACAGAGATGCATATCTCCAGTTCGGGAACC # Right flank : GCTCGGAACAATAGTTTTCCGGCTATTTCGAAGTGCTGGGCGAAGCCCGGATGGTGTGCCTGTGGCGCTGCAGCGTCGGCCCTGTCGGTGACGCGCTGTTTGCGCCGCACTCGGTGATGATCCAAGCCGTGACCCGCGCTGGGCAATGGGTGTGCCTCTGCCAATCAAGGTGGTGACGGCATCTCAATACCTTGACGCCGGCCGAACCACAATCGGCTGATACTCCGCGAGGTCGCTGGTGTCCAGTTCCCGATCGATTGGTGGCGGGATTCGACGAGGTGCGTAGGGTCCGTTCGTGTCTTCTCTGTGGGCGCACAGCCCTGCTCCTGGCACGAGCCGCTGGCATTTACTCGCTGATCATCTTCGTAGCACTGCGGAGTTGGCGCGACGGTTCACTGTCGCCTTCGGTGGTGGTGAGGTGGGGTACTGGCTTGGTGCGCTGCATGACGTGGGCAAGGCGTCGTGTGCCTGGCAGGACAAGCTGGCTGCTGTAGCGTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12991-16354 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKJ01000101.1 Micromonospora sp. KC207 NODE_101_length_20248_cov_14.3935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12991 37 100.0 36 ..................................... TCGACGCCGTACCGCGCCGCAACGCGCTTATACGTC 13064 37 100.0 38 ..................................... CGGGCAACCCGTAGGTACTCCTCCACCAGGTCACCCAG 13139 37 100.0 37 ..................................... GGCTTGGACCTGCGCCCGCACCGCCCACGACACCGGC 13213 37 100.0 36 ..................................... GCTCGCGCGTCTCCGGTCGAGTCGGCGGACCGCCAC 13286 37 100.0 35 ..................................... GAGACGGACTTCGGTCGGCTCAACATCATGCTCAA 13358 37 100.0 38 ..................................... GGGGTGCAACCCAACAACGACCTGGAGACGGTGGAGAT 13433 37 100.0 35 ..................................... CAGGTCACGCGCCATCCCACGGTTTCGATCTCCGA 13505 37 100.0 35 ..................................... AGGTAGTAGCGGATGCTGTCCGCGACCGTCGTCTC 13577 37 100.0 39 ..................................... CGGATGTACGACTGGCAGCTGTGGGCCACGGCGAACCAC 13653 37 94.6 35 .........................AG.......... TCGGTGTCGGTGAGCTCGATGTGATCCCACACCGA 13725 37 100.0 38 ..................................... AGGCTGGTAGAGATCATTTCGAACGATCCCCAGGTCGC 13800 37 100.0 36 ..................................... CAGGGCGTCGTAGGCGAACAGCACCGGCAGGGCGTT 13873 37 100.0 39 ..................................... GTCGTCATCGTCCACATCAATGCCGCCCGGGTTGACGTA 13949 37 100.0 36 ..................................... CACCTGTGGGAGGACCCGAACGCGCCGATGTACATC 14022 37 100.0 37 ..................................... GGCATTGACAGGACGTTGGCGCGCCAGAACTGGTCGT 14096 37 100.0 37 ..................................... CCGGCAAGGCGGTACCGCCACCGGGGCAGTATGCGGT 14170 37 100.0 39 ..................................... TTCGAGGTCGACGTCGACGCGATCGAGAGCGTCGTCCGT 14246 37 100.0 38 ..................................... GCGTTCAGGGCGGTCTGGGTGGCCGTGCTGATCGGCTT 14321 37 100.0 38 ..................................... CACAGGCTGGTAGATGAGGCTGTGGACAGTCGACGCGC 14396 37 100.0 38 ..................................... ACCTCCGGCGATGGCTAATTGTCGTCGATAATTGCGGA 14471 37 100.0 37 ..................................... CACGTGCCCACGGTCAGCTCCCGGCGGTGCCGATGAT 14545 37 100.0 37 ..................................... TCCGCCCCGGGCGTGGCTGGTACATCCGTACGGCCAA 14619 37 100.0 37 ..................................... GTCGGGTCCTCCGGCACCACCAGGCCGTGAGGCACCT 14693 37 100.0 38 ..................................... TCTGCCTCCACCGTGGCACCGGTCGCCAGCACGAGCCG 14768 37 100.0 37 ..................................... TGCGCCAGGAAATGGTCGAACTCCAGCCTCGGATCAG 14842 37 100.0 36 ..................................... TCTGGCCGGGGCTGCGGGACCTGGCCCCGGGGTCGA 14915 37 100.0 36 ..................................... ACGACGTACTTCACGACGCCGCCCTGCTCGATCTTG 14988 37 100.0 37 ..................................... GTCGGCTGCCTGGCTACGTGGGAGGCCGCGCGACGGT 15062 37 100.0 37 ..................................... GATGGCAACGAACAGCAGTTCGACTCCCTCGATGAGA 15136 37 100.0 36 ..................................... TGGGGTGCGGTCGCGGGGGTGTCGATCCTGTCGCAT 15209 37 100.0 36 ..................................... TGGGGTGCGGTCGCGGGGGTGTCGATCCTGTCGCAT 15282 37 100.0 39 ..................................... AACCGGGTGACGGCCAGGGCGAGCAGCACCCAGACGCAC 15358 37 100.0 37 ..................................... TCCCGCGCGGCCGGTACAACGGCGGTTACGCGGAGAT 15432 37 100.0 39 ..................................... CTCCGCCACGCCGATCCGCATCGCCTCCAGCTGGGCGGC 15508 37 100.0 35 ..................................... CACTCGACGTCGCCCACCTCGGGGTCGAGGGAGAT 15580 37 100.0 39 ..................................... CTCCGCCACGCCGATCCGCATCGCCTCCAGCTGGGCGGC 15656 37 100.0 36 ..................................... TCGGGGGCGAATGACCAGTCGGACAGCGTCTTTGAA 15729 37 100.0 34 ..................................... TCGACGGGCATGGGCAACCTGCGGTCGTACCGGT 15800 37 100.0 36 ..................................... TTCGGGCCGGACGGCGTGTGGGCGATGTGGGCCAGC 15873 37 97.3 35 ......................T.............. GTCGGACTGACGCCACGCCGTTTCGGCGGGCGGTT 15945 37 97.3 38 ............A........................ CACAGACCGACCCGGTGAGCGTCCGCCAGGTCCGCCGT 16020 37 100.0 37 ..................................... CACCCGTGCCACGCCCGTGCTGTCAGGCGTGCCACCA 16094 37 100.0 37 ..................................... GTCGGCGGCTCAGACGATTAGGCGCACAGGGACAGAC 16168 37 100.0 39 ..................................... GCCCAGAGTGGTGGGTCGGTGGCCAACCCCGACCTTGCG 16244 37 100.0 37 ..................................... GGCGGACCGGTCGACGGGGACGATCCGGCATACTCGG 16318 37 97.3 0 ........T............................ | ========== ====== ====== ====== ===================================== ======================================= ================== 46 37 99.7 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : TGCCACTCGTACAGGCCAGACTCCTCGCACGTCACCTCCGCGGCGACCTGATCGCCTACCAGCCGTGGACGGTGAACTGACCCATGGATTTACTCGTCACATACGACGTCGAGACAGTCACGCCGCAGGGACAACGCCGACTCCGCAGAGTCGCCAAGATCTGCGAGGCATACGGACACCGCGTCCAGAAATCAGTGTTCGAGGTGGTCTGCCGCGAAACCGACAAAGTACGCCTCGTCGCCGCCCTCCAAGAGATCATCGACCCAACCCAGGACACCATCCGGATCTACCGGCTACCAGCCCAAGCGCTCGACGACATCGAGCACCTTGGCAAGCCGCGGGCGATCGACCCACGAGGACCGTTGGTGATCTAGGAACCCCAAGTGAACACGGAACGCCCAGGGGGTTCCGAACCAAAGAATAGGCATCAAATGTGCAAAACGGACCGCGAGCGAGTAGCCATCCCATTGGCGTACGGCTATCTTTGCTGCTCGTGAACC # Right flank : CCCTCCAGGTCGCGAGCAATTCCTCTATTCCGGTCGCCTACAGATGTTGAATGGCCAGGTTCGTCCGTTGTGGTCTGTGTGATGGCTTGGGGCTGGGGTAGATCGATGGGATGAGGTATCCCGATGGAGGTGGGTTGTCCGCGCGGGGGCGGGCGAGGCGTGAGGCGGTACGGCGGCAGGCGGCTGGGTGGTTCGCCGAGGATGTGTCGGTGCCGGAGGTCGCGCGCCGGTTGCGGGTGTCGCAGACCGCGGTGTACGGGTGGCGTAAGCGGTGGCGGGCCGGTGGTGAACAGGCCCTCGCCTCGAAGGGGCCTGCGGGGTCTCGGTGTCGCCTGGATGAGGGTCGGCTGCGGCGGCTGGCCGATGCCTTGGAGCAGGGGCCGGCAGCGCACGGGTTCGGCGCCGATCAGCGGTGGACTTTGGCGCGGGTGTCGGACCTGATCGCGCGGATGTTCCGCACCCGGTACACGCTGCGTGGCACGGCGAACATCATGTACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14303-11896 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKJ01000097.1 Micromonospora sp. KC207 NODE_97_length_20712_cov_14.0577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14302 28 100.0 33 ............................ CCAGCAGCCGCGGCAACAGCAGCGCCCACGATC 14241 28 100.0 33 ............................ CGTGAGCACCCACGGACCGTTGGACACCCCCAC 14180 28 100.0 33 ............................ CTCCTCGGTCTGCTCCTCGGTGTGGGCGATCAT 14119 28 100.0 33 ............................ CAGCGACAGCACCGCAGCACCGACAGCCACGCC 14058 28 100.0 33 ............................ CAGCAGCGCCCCCGCTCTGGCCTCATGGCCAGA 13997 28 100.0 33 ............................ CGGGTCCGTCACGATCCACCAGCCGGGATGGTG 13936 28 100.0 33 ............................ CTCGCGGCCCCGGTAGTCGACCAGTTTGGGCGC 13875 28 100.0 33 ............................ GTCGGTGGTTGACGCGGTCGAGGCGGAGGACAT 13814 28 100.0 33 ............................ TAAGCATGCAGTGCTGACATGCCCATTGGGTAA 13753 28 100.0 33 ............................ GGGTGACGTGCGGGAGGCGATTCGGCTCAAGAC 13692 28 100.0 33 ............................ CAAGATCGACAGGGCGCGGGCCCCGGAGTCGGC 13631 28 100.0 33 ............................ CGCCCCAGTAGCCGATCTCGTCGTAGATGAGGA 13570 28 100.0 33 ............................ GGCGCTGCTGCGGGCCGCGACGGTCGCGCCGGT 13509 28 100.0 33 ............................ GGTGCCCAAGATCGAGGGCGAGTACGACCAGGA 13448 28 100.0 33 ............................ CATCGACGACATGCGGTGGCGGCAGATCGCGAC 13387 28 100.0 33 ............................ CAGGACGTTTACGCCCTCGGCGCGGCCGATACG 13326 28 100.0 33 ............................ CTGGGATTCTTGGAGCGTCTACAGTCCCACCGA 13265 28 100.0 33 ............................ CAACCCGGTACACCTGTTCGAAGTACGAGTAAC 13204 28 100.0 33 ............................ CCAGCCGTTCGCCGCACGCCGCACCCGGATCGC 13143 28 100.0 33 ............................ CATTCAGGGCACCCCCGCCCCGAAGGCGCTCAC 13082 28 100.0 33 ............................ CGAGCCGGTCGATCGTGTCGGGAAGGAACCCCA 13021 28 100.0 33 ............................ CGTGCGAGCCTCTTTGAGGGTGGCGGTCCGTGC 12960 28 100.0 33 ............................ TCGTTGCAAGGCCATTCATCGTGGCTACCGGTG 12899 28 100.0 33 ............................ CTCCTGGCCCCAGGTATCGACGTGCTGCTCGAA 12838 28 100.0 33 ............................ CGGCGTCCCGCTCCTCGACGGCACCGGCCTGAT 12777 28 100.0 33 ............................ GCTGCGCCTGTTCCGACCTGAACCCGCCCCACG 12716 28 100.0 33 ............................ CGTCTCCCCCACGGGCGGTGCTGTCACGCTCGA 12655 28 100.0 33 ............................ ACATGTTGCGGATACCGTCGATCAGCCCAGACA 12594 28 100.0 33 ............................ GGCAGCACTGGAACTGGATGATCAGCGCGTGAT 12533 28 100.0 33 ............................ GTGCCGGTCAGGTCCAGGATCGTGTCGGGGTTG 12472 28 100.0 33 ............................ CGTGATCACCTTCGACACGTTCGAAGGTCCCAT 12411 28 100.0 33 ............................ CCGGGTTGCGTTCGGTCGGGAAGCCGTCCAATC 12350 28 100.0 33 ............................ GGTGCCCGGCCGACCGGCCGCCTGGTTTCACAT 12289 28 100.0 33 ............................ CTTGATCTGCACCGCACCCTTCTTCGGCTTCTT 12228 28 100.0 33 ............................ CTCGCGCTTCGGGGGCCGGCCCTTGACCCGACC 12167 28 100.0 33 ............................ CGACAGACGCGAACGTGCCGTCGATGTTGCTGT 12106 28 100.0 33 ............................ CGTGCTGCTGATACACGCGCCACCGCTGGTCGC 12045 28 100.0 33 ............................ GGTCAGAGGGCCCGCCGGAGAGGCATCCGGCGG 11984 28 100.0 33 ............................ GGGGGGTTAAGAACAGCACGACCTGGGCAGGGA 11923 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGTGGGACGAGGGGGGCTACGAGCTCGCCGGCGGCCGGAACTACGGCGGGGACGTGGACTTCTGATGACCGTCATCATTCTGACCGCCTGCCCGGAAGGGCTGCGGGGGCACCTGACGCAGTGGCTGCTCGAGATCTCTGCCGGAGTGTACGTGGGAAACGTAAACAGTCGGATCCGGCAGCGACTCTGGGCCAAGGTCGTCGAGATGGCCGGACCAGGCCGGGCACTGCTCGTCTACCAGCGGCCCGGCGAGCAACGACTTGCTTTCGAGGTGCACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCACGCTGATGCGCCGGCCTACGGAGCGGAGGTCGTACAACCCGGCAGTTGGTCAGGGATGGAGCAAGGCATCCAAGCGTCGGAGGTTCGGACGGAGGGCCCCGGATGGGACCAGCGGATCGTCGAGGCCCTCCGAGCAGAGTGAAGGAAAAAGTGGTAGTTGATCTTTGGCGCCCCAGCTCAGGAAGC # Right flank : CCTGCGGGTCACGGTCAACAACCTGCGCCGAATCTGCTCCCCGTGTCAACGGCGGACTGGAACTGGCTCTGGCACACATTCTGTGAGTGATCTTGGGGTTGCTCAGGGCAGGGTGAGGACGCGTTTGCGGAGGAGGTCGAGGTTCGCGCGGCCGTACATTTGTCGTTTGATGGTCTTGATGCGGTTGACGTGGCCTTCGACCGGGCCTGAGCTCCACGGTTGGGTGAGGCCGGCGAGGACCGCGTCGCGGTCACTGGCCAGGCCGGCGGCGAAGCCGCGCAGTTCGGGGTAGCCGGCGTGGCGGGCGCGGTCGATCCAGGCGTCGAGGTGCTGGCCGGTGCCTTGGTGGCGGACCAGCGCGGCGAACCCGCGGGCGAGGTCGGCGATGGTGTCGAGGTCCGGGCAGCGGCTGCGGGCGTCGGCGAGATGGGTGCGGTCGTCGTCGGTGAGTTTGTGGCCGGGGCGCATGATCCAGGCGGTGATCCGCCGCGCGGGCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //