Array 1 22567-23915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXX010000026.1 Pseudomonas aeruginosa strain Patient_25_PostExposure2 54702_c0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22567 28 100.0 32 ............................ TGGACGCACGCAGCGAAGCGCTGACGGCGATG 22627 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 22687 28 100.0 33 ............................ ATAGCGGAAGTAGATCGCGTCCGCGGGTTCAAA 22748 28 100.0 32 ............................ AATTATCAGACTGCTGCGAACAACGTGAACAA 22808 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 22868 28 100.0 32 ............................ CGCAGCGCAGGGCATTGATCAGTGCCGCCCGG 22928 28 100.0 32 ............................ TTCGCAAGAGGGGCATCGAGGAAGTCAACACG 22988 28 100.0 32 ............................ TTGTCGCTTCCAATTAGGCCGGCGCGCTTCTT 23048 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 23108 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 23168 28 100.0 32 ............................ TGATCGAGTCCAGCGAGCCGCTCGACTGGTCA 23228 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 23288 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 23348 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 23408 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 23468 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 23528 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 23588 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 23648 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 23708 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 23768 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 23828 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 23888 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33128-32440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEXX010000026.1 Pseudomonas aeruginosa strain Patient_25_PostExposure2 54702_c0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33127 28 100.0 32 ............................ TATCGCCATGGTTACGTCACTCATCGCTGACT 33067 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCACCCTCGC 33007 28 100.0 32 ............................ AGGGGGTCAGAGGGCAGGGGGAGAAAAGCTTC 32947 28 100.0 32 ............................ CCAGGCGCCGGCTTCTTCCCAGGTGATGCCGG 32887 28 100.0 32 ............................ AGGATCGCGGCGGAATGATGTCTCGCGCCGAC 32827 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 32767 28 100.0 32 ............................ TTGCTGTGCTTGAAGAAAAGGGGTTCGTCCAA 32707 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 32647 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTCAGTTGGCC 32587 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 32527 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 32467 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //