Array 1 356-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000030.1 Microcystis aeruginosa KLA2 scaffold30_contigs=5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 355 36 100.0 32 .................................... CTGCTGGAGAAGGGTTGTATCTATGACGGGGG 287 36 100.0 36 .................................... TGGCTGGACTATATTTATCCAAGACACGATACGTTG 215 36 100.0 37 .................................... TATGCATCTAATGGTCCTGTGGGGGCCATTAGTGGTT 142 36 97.2 39 ...................................A AATGCCTATTGAGCAACTCAAAATTGAGACACTCGAAAA 67 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 99.4 36 GTTTCCATTCATACGCTTCACGAATTGGAAGCAAGT # Left flank : AAAATCCTTTAAATGTGATTATTTGGTCTTTTGAAAGTGCGATCGCTACTTAGGGTTTGCTGAAAAAGTACGGGCGAAGCATTCGGATAGAAAATCTACGGTTTCACCGATAGGTTACTGCCCGAATGCTTCGCCCCTACAGGACGCGGGCCGATGAAGACGCAAGGTTTTGAAGCACGATTCTCTCAAAATCTTGCACCTGTTTCACGAGAAAAGCCACAAAACCCTGACCTTGCCTACATTTCACATTTATTCAGCAAACTCTACTTATGAGGGGTTTGTAGCCAGTGGAGAACTCGATCGAGATCGAGTTGAGTTGTAGATCGGGAAATTGGCTATTATAAACGATGCCCAAAAAATCATCTCCTCCCGCATAAATTATTCTGCCGAGTTCAGTCTGGTTAAACTTCCTCTGAAATTGTTGTCCCCACTGACGCATAATCTCGCTGAAATCTCGGATTTTTCTTAACCGATGAGATGGGATTGATCCCTGGCATTCT # Right flank : TGGCTCTGCTGAATTGGCAGCAGTTTGCGCGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCATACGCTTCACGAATTGGAAGCAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 29257-29505 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000189.1 Microcystis aeruginosa KLA2 scaffold295_contigs=1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 29257 35 100.0 35 ................................... CATGGTACGAGAACCATCAACGAAGTCCGCAGTAT 29327 35 100.0 35 ................................... CATAAATGGTCAGGATTCCGGCCGAGACCAGTATA 29397 35 100.0 39 ................................... TGTACCAAGACTGTATATGCTTGATAAATTGATCAGCAG 29471 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 100.0 37 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AGGAGGTTTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGACTCGTCGCGTGGAAGCAGTGACACCCATTGATGAACCAGCGATCGCCAAGGAACTAGAAGAAATTCTCGGGATCATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGAAAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACAAAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGACAATTATTATTAATAATGTCTATGCTTTTCAATATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : CCTCCTGAATGCTCACCAAAACAATCGTTCCGGGAACCTTGCTTCCAATT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 51748-52315 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000045.1 Microcystis aeruginosa KLA2 scaffold45_contigs=8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================= ================== 51748 36 100.0 34 .................................... GTGGCTGATAGGTTAAAACAGTCCACTCTTTTAT 51818 36 100.0 35 .................................... ATGTTTCTATTATGGCATTGTTCATCTGGTCTGTC 51889 36 100.0 41 .................................... TATTCGTAGTGAGTACCCTTAAAATAAAATCCCTGTTCCGA 51966 36 100.0 34 .................................... TCTTAAGTTGCAACGACAAATTAACCGAAGTGTC 52036 36 100.0 38 .................................... TGGTTTAATCCGTCAACGATATTGCCAGGAGCCGATAA 52110 36 100.0 41 .................................... CTAGAGTTGGCTTCGGCTCTGGCTTCGTCGGGATTGGTTTT 52187 36 91.7 57 .C................................NN NNNNNNNNATTGAATGGAAACCCAATAAAGTCAAGTATGTGGGTCAATCTTTTCTGA 52280 36 97.2 0 .C.................................. | ========== ====== ====== ====== ==================================== ========================================================= ================== 8 36 98.6 40 CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : ATCAGCCTCATTTGATCCGCTAATCATGTTATTTTACGTTATTGCCTATGATATTCCCTGCGATAAAAGGCGTAAAAAAGTGGCTGATTTGCTGGAAGGATACGGCCAACGGGTTCAGTATTCAGTTTTCGAGTGTGTTTTAAGCAAATCTCTATACAATCAGTTAAGAGAACGCCTGCAAAAGCAAATCAAAGAAAACGAGGATAGTATTCGATTTTACCCCATCTCTGGCCATACTTTAGCACAAATAGAGACTTTAGGCGGTGTCCCGCTAACTAAACCGCCAAGTTCTACGATCATCTGATTCGGTATCATCGACTAGCGACGGATAGGGCTGGGAGCAGATAACCTCGATTTCTGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACTGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCCGAACCCCAATCCTGTTCGGACGTTTGCCTACCGGCT # Right flank : CCCAGTACGGGTAGTTCTAGAACCCAAAGAACCACCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 52938-53122 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000045.1 Microcystis aeruginosa KLA2 scaffold45_contigs=8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 52938 36 100.0 40 .................................... GTCTAATACTAAATTCAGAGTACTGGATTGTTGCCCGACG 53014 36 100.0 37 .................................... TTGGACAATTCTTCGTTTAATTCTAGATATATGCTTT 53087 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 100.0 39 CCCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGCGAAATATTGCCCGGGGTGCGGCCAGTCCA # Right flank : GAACTGTTTCCCATTGATAACTTCAATCATGGTTTAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCTACTCGCTAGAGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 887-703 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000059.1 Microcystis aeruginosa KLA2 scaffold59_contigs=9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================== ================== 886 39 94.9 33 NN..................................... TTTAAAAATTATTAGGAGACAAGGATATGGAAA 814 39 100.0 34 ....................................... GGCAGCTTTCGGGTCAATCGAGGCGGCTGACTAT 741 39 69.2 0 ...........................NNNNNNNNNNNN | ========== ====== ====== ====== ======================================= ================================== ================== 3 39 88.0 34 ATGTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Left flank : ATCAAAGGGCAAGAGATCCGCCGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACCGATCGGTGGCTTGCGGCGATCGGGGCTTGCTGGTGGTTCCAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATTGAAACTCAAAGAATCCTACCATGATAGCGGCACTGGTATCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGGAATTATTAACACTCATAAGCTGCACCCTTTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGAGGGGAATTTTTCGGGGGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTCCGTCTTGAAGTGGGAATTTGAGGATGGTAAAGGGTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAACATCAGTTTTGTGTTATAATCAATCTTAATTTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1509-1328 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000059.1 Microcystis aeruginosa KLA2 scaffold59_contigs=9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1508 38 97.4 32 A..................................... GAGAGTTTGTAATTGCTTTCGATCAAGATAAG 1438 38 100.0 35 ...................................... AGATTTATTTAGCAATCAAAGGGCAAGAGATCCGC 1365 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 99.1 34 CGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : AATCCCATAGCGTACGGCTTTTACCACTGGGCGGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACAACAGCTATGTAAACAATCGAGTAAACGAGTTAAGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACATTACATAAGCCAAGCTTTAATGATAGTATTCGAGTTCCAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAGGGATTGAAACCTTTCCCTTGCAGTGCTAAAAGCACTGCATTCAG # Right flank : CGATCGGTGGCTTGCGGCGATCGGGGCTTGCTGGTGGTTCCAATTAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATTGAAACTCAAAGAATCCTACCATGATAGCGGCACTGGTATCTTGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACTTGGAATTATTAACACTCATAAGCTGCACCCTTTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAACTTTAAAAATTATTAGGAGAC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 37817-37561 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000118.1 Microcystis aeruginosa KLA2 scaffold129_contigs=1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 37816 38 97.4 34 .....................................G GAAATTCGTAGCCGCAGTGAGGACAAATACGAGC G [37786] 37743 38 100.0 34 ...................................... CAAGATTTCTATTTGCTTAGATAGCAATAGAATC 37671 38 100.0 35 ...................................... ATTTTAATTTGGCTGATTTTCTTTTGTTTTTAGAT 37598 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACT # Left flank : GGGATTGAAACGGAGTTTATCAAACCACTAGCCAACTGCGAAACCC # Right flank : GGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATGAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCCCCATACCTATTACCTAGCATTGTTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCTACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCTTGGCTAAAATGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 71024-71359 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000083.1 Microcystis aeruginosa KLA2 scaffold84_contigs=12, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 71024 36 100.0 41 .................................... TGTTGGCATACGGGGAACGTTCCCACTGTCGCCACCGAGGT 71101 36 100.0 39 .................................... TTGTCGTATCCAAACGAAAAACTAAAGTCAGCAATCTTG 71176 36 100.0 38 .................................... TTGTCGAACATATAATCGTTCCAAACAATGAACAATTT 71250 36 100.0 38 .................................... CAATTTCTTCCTCAGAAAGAGAAGAGGTGGGGTCGAAC 71324 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 100.0 39 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : TAGACGAGAATAATGGTAAAGAGAGCAAATTTCAAAAACTTTGGCCGAAATAATCCCGTTCAAAGTTAAGTACCGCGCGCAAAATTAATTACACATTTCGATAAAGCTTTTGCCTTTTACCTCGACCAGATGCGGAAACTATACGCTAAAGTAGTAGAAAGGGTCAATCCTCAAGAGGATGATGTACGCTTCTATGGGATTTCCAAAGAAGCAGTCTCTAGGGTGTTGGTAATTGGAGGTTCTCCTCCTCAACCACCCCCAACTGTCTATATCATCTAGCTTGTCCAAGAACTCTTGGCTGAAAATCGATGCACCCTCTCCCCGACTCCCAAAACCCCGATTCTCTGGTTGAGGTGTGTCGATTGCTCTCCCCGTCAGGGTTCTACCCTTTGGTATCGGGACTTTTACCCCCCCACTACCACCTTTTTACCCTATGCATTGCAGGTGCGTCGATTTGGGTGTCTGTCTTCCCCTCTCGATAAGGCTTTCCAAGGGGTACT # Right flank : AAAGCTAATAAGCCAGCAGTCAATGTCATTCTGTCAACAGAAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 12674-13283 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRR01000014.1 Microcystis aeruginosa KLA2 scaffold14_contigs=2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 12674 36 100.0 37 .................................... ATCGTTGCTAGTGATTCTTTAAAAGGCACTGGATAAC 12747 36 100.0 36 .................................... TAAATGTCAAGTTCGGCGCTAATGTACCTACTCCTG 12819 36 100.0 34 .................................... CTTGACAATATTACTGACTTCGCGGTAATATACA 12889 36 100.0 36 .................................... TGGGTCTATGGGTCGGGGTTCCCGAAGTCGCTGGAT 12961 36 100.0 35 .................................... CTGCATGAATTTCACTGGTAACAGTTGCTTGTAAA 13032 36 100.0 35 .................................... GGATAAAAATGTTTTAGAAACCATGGTAGCTAGCT 13103 36 100.0 39 .................................... CTCTAGAGAAATCGCCAAGCGGGCCGGGAAAGAAACGGC 13178 36 100.0 34 .................................... TTATAGTTTGAGTCCCTGTATAGGGAAAAAGAGT 13248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 36 GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GTCCGCAACGCTGGCGTAAAGCTTACAAAATTTTAGGCGGTTACGGCGATCGCATTCAATACTCGATTTTTCGCTGTTGGTTAAGTGCGCGAATGCGAGAAAAATTGCGCTGGGAATTGGAAAAAGTCCTTACCCTAAAAGACGACTTAATTTTAATTCGTCTGTCGGAGCAGTGTGTGCGCGATCTGCCTAAGTACAACCGACCTGACACATGGCTTTTGGACGAAAAAGGGTTTCGGGTAATCTAAAAAAAACAAGCATCTCTGGCTGGGAAAAAATCCACGGGCTAAAATTTATTTGTATTGCTAATGCTGTCTCGGTTTCAGGGTTTGACAAGGAACAATTCCTGCTTGCATTTTCTAAAAATCTCACTGGATAACGGTTTTCAGATTCGGTGCTGTCACTCAAAAGCTCTGATCAGAAGATTTCTTGGCGTTTTTCTAGAGGTGCTTGTAAAATGGACTGTGAAGCTATACACCAAAGGCTTTTTCAGCCTCGCC # Right flank : CTCGGATATTTAAGCTTTGACATAGACAAAAATGCAAAGACCATGGCCAGTAAACGATCGCTTTTTAGAACTTCGTTCTCATTGGATGACCCTGATCGGGGAACATCTACAAGACGATCGAGGACAACTATTAGAATATTGGCGGGTTGAAAAAGCTGATTCCGTTATCGTTCTGCCCATTCAAAACTCGATGATACGGCTGCCCGCTCCCAGTTATCGCCCCGGACTGGGACAAACAACCCTTGATTTCCCCGGTGGTCGGGTTTCCGAGGGGCAAGACCATCACGAGGCGGCGTTAATGACTTTAAAAAGAGAATTGGGAATTGAAGCGACGGCAGTAACCCGATTAACTCCCCTCAACTCCACGGGTTGGTCAGTCAATAGCTCCTTTTCCAACCAGAAACTCTACGGTTTTATCGCCGATATCGACGGCGGCCTATCTACCAGCGAAGTATTGACCTATCCCGCTAATTCGATTGGAGTCAGCGATTTGTTGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //