Array 1 316995-318323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030810.1 Listeria monocytogenes strain 11 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 316995 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 317061 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 317126 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 317190 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 317256 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [317268] 317324 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 317389 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 317454 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 317520 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 317584 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 317649 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 317714 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 317779 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 317842 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 317905 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 317971 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 318034 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 318099 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 318165 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 318230 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 318294 29 93.1 0 .......................A....C | C [318317] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2540000-2537122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030810.1 Listeria monocytogenes strain 11 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2539999 36 100.0 30 .................................... AACTTGGAAGAGGCGACGAATTGGAGGCCA 2539933 36 100.0 30 .................................... TAAATTCTTTAATGATATTAATAAAGAAGT 2539867 36 100.0 30 .................................... AGCATTTTTTATTGAAGTGAAAAACGAGAT 2539801 36 100.0 30 .................................... CTTGTTGGTAATTTATCACCTGTAGCAAGT 2539735 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2539669 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 2539603 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2539537 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2539471 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2539405 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2539339 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2539273 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2539207 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2539141 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2539075 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2539009 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2538943 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2538876 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2538810 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2538744 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2538678 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2538612 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2538546 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2538480 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2538414 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2538348 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2538282 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2538216 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2538150 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2538084 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2538018 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2537952 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2537886 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2537820 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2537754 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2537688 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2537622 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2537556 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2537490 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2537424 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2537358 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2537292 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2537226 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2537160 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2537125,2537128,2537133] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //