Array 1 6236-6997 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUP01000124.1 Streptomyces viridochromogenes strain NRRL 3427 P002contig203.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6236 29 100.0 32 ............................. CAGAAGGAGCACGTCAAGGCGCATCCGACCTG 6297 29 100.0 32 ............................. TCCGCGACGACGACCACGACAGAGATAGCCGT 6358 29 100.0 32 ............................. TGGCCATCGCGCGCGGGCTCCAGCGCACCGCT 6419 29 100.0 32 ............................. GACACCAACGTCCCGGGCGGGGACGTCGACTT 6480 29 100.0 32 ............................. AACCCGAAGAACACGCCCGGCATGTTCCGCCT 6541 29 100.0 32 ............................. AGGCGCACTACGGACAGCGCGTCGCACGCGTG 6602 29 100.0 33 ............................. GGGCACGACCTGGAGAGGTCACCCCCGACCAGT 6664 29 100.0 32 ............................. TGACGGCACTTCCGAGGGTATTTCAGCACACG 6725 29 100.0 32 ............................. CCGCCTGGTTGGATTTCCAACCCAGATTCCGG 6786 29 100.0 32 ............................. ACCTCCGGCCCCATCAGCCTCCACCGCAACGC 6847 29 100.0 32 ............................. CGCGGCGACGAGACCGTCAGCACGAACCCGCT 6908 29 100.0 32 ............................. GGCCCTGCCTCCTAACCTGGCAGGTGTCGAGT 6969 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AACTGCACCGGGACGGCATGCTGACTGAGACCCTGGACGCGGCCTCCCACCCAGGGCCGGTAGAGCGCGTCGTCCGAGTCGACATGACCGCTCCACCGGTCCACCCAACCCGGATACCGCTCAGGGAACATCTCCCGCAGCCGCTTCTCGGCCGCCGGTAGCGTGGGACGCACCCACACACTCCCAGCCGTAGCCCGGCCGTTGAGACGCAGCCCACCACGCCTGGCCTTGCCCGGTTCTGGCACAACTTCCGTGAACCACGCCGACCGAACTCGTATCCGCCGTTGGACGAGCCGTTGACCTGCCGGTTCACCAGGGGCGTCGGCCTCGGGCATCGAGGATCGCTCCGGCTTCACGGAAGTCGTGCCAGAACCCGAAGTCGTGAACAAAGCCAACGCTGAGAAGCGTAGAGAGAAACGAGCACTTTGGGCTCTTTGCCGGTTTCGGCGAAAGTGGTTCAGCCGGGCCTGCGCATGCGGTAGAACTGCAGGTCACGAAGT # Right flank : TGGACCCGGATGAACGCGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 116-1787 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUP01000141.1 Streptomyces viridochromogenes strain NRRL 3427 P002contig218.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 116 29 100.0 32 ............................. CGGGCATGGTGCGTCGCCGGCGTCGACGACCA 177 29 100.0 32 ............................. GCCAACTCGTGGTGGCTGAAGGAGAAGGGACA 238 29 100.0 32 ............................. CACCCTCCGCACTCTAGGAAGAAGCCGCACAT 299 29 100.0 32 ............................. TACCTGGCCCAGCCGGGGTTCGAGGTGTCGGA 360 29 100.0 32 ............................. CGGCGGTGGCCTCAGCCCACCGGGTCACCTCA 421 29 100.0 32 ............................. GCCTGGTCCTGCTCCTGGTACCGGGGGATGGA 482 29 96.6 32 ............................A GGGAAGCCGGGGTACGGACGGCTGCTCCGCAA 543 29 100.0 32 ............................. GACCCTGCCGGATGGCGCGCCATCGAGGGCTA 604 29 89.7 32 ..........T.....T...........T CGGGCTTGTGCCCATGCCTGGGCTTCTTGGAA 665 29 82.8 31 ...........T.GC.........GC... GCGGCACCACGGTCATCCAGACCGCCGGCAA 725 28 82.8 32 ...T.T.....A..-.........G.... GACGAGCACTCCGTCGCACAGCGGTACTTGAT 785 29 82.8 32 ..A.....T.....C.........GC... CGGGACCAGGCCCGCCTGGAGGCCGCCGTGTT 846 29 89.7 32 .............GA.........C.... GGGCTGCGTGAAGTCGCCCTCGGCATCGAACC 907 29 75.9 32 ..A....T...T.GC.........GC... ACGGCCGTGACCGCCCCGATCGCGATCGCGTT 968 29 82.8 32 ...........A.GC....A....G.... CAGGAATCGGCAAGCTGGAAGGGCACGCCGTC 1029 29 86.2 32 ...........A..C..A......G.... TGGAACCTGTCGGTCGACCTGCGCGCCACGGG 1090 28 86.2 32 T..........A..-.........G.... GCGTGCTGAACCGGCGACGCGTCTCCCACGAG 1150 29 86.2 32 ...........T.GC.........T.... TCGAAGAACTCATGCCGCAGGAACCGGGCGGT 1211 29 89.7 32 .............GC.........G.... TCGCCGAGCGTCCGGTCCTCGTTGGTGCGGAA 1272 29 86.2 92 ...........A.GC.........G.... GACGCGCTGCGGATCCTCCTCCGGCGCGGCGCGCGGCCCCTCCCCCGCACGCTGGGGCCGCTGGACGACCGGATCGCCGAGCACCGCGCCGA 1393 29 82.8 32 ......T....A.GC.........G.... CAGCCGAGTGCCCACGTACTCCTCCAGGCGCG 1454 29 86.2 32 ...........A.GC.........G.... CGTCTCCAACCAGCTCTTTCGGCGCCTTGATG 1515 29 86.2 32 ...........A.GC.........G.... GGCTGGCGGAAGACCTGCCGGGCGTCGCGAAT 1576 29 86.2 32 ...........A.GC.........G.... GCGCCGGCTAAGAGGTGCCGCCCCAACGGGGC 1637 29 86.2 32 ...........A.GG.........G.... GAAGAACTCGACATAGGCCAGTGCGGGCAACG 1698 29 82.8 32 ......T....A.GC.........G.... ATGTTGGCGTTCGGCAGGGTGGCCGCAGTGAA 1759 29 89.7 0 .................T......GC... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 27 29 89.5 34 CTGCTCCCCGCGCCTGCGGGGATGATCCC # Left flank : AGCACGGCCCACTGCTCGTCAGAAAGATCCCCTCGCCCCACACCGCGATCATCACGGCACAGGGCGAGCGGCGAAACCTACTTCCAAAACACGCCCTAGGGGAGGGAGTCTGCCCC # Right flank : CTCGGCGTTGCCGTTCGCGCTCGTCGTCTTTCCGGATTGTGTCTGCCCGGCTGCGTATCTTGCCGGGGCGTGGGGCCGTTCATGTGCGCCTGGTCCTGGGGCGAGTTCTCTGTCCTGTGATGGACGGCGCCTGCGGGTGCTGCCCGCCGGTTGGAGCACCGGGTGCGGGGCTGGTGCCTCACCACCTGTCTTGCCCGGGTCGGGGTCTTCCTGTGCGTTCCGTTCGTGCGGAAGGAGTCGGACGGCGCCGGTGTTGTCGGTCCCTGGTGTTAGCGTCGCCGTCATGGCGAACCGTTCATATCTCTATTCCGCGGACTCTATGCCGAACGAGGCGGGGATCCCTCAGCAGATCCGGTGCATATCGGAGCACAACTGGGACATCCCGCTTGCGCATAAGCTCATGGTGGGACGCGGAACGACGATGGTCCCGTCCATGATCTGGAACCCTCCGATCGGCATCGCCGCGGACTACGCCGAGGGGGCGGCTCTGCTCCGCGACC # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 567-108 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUP01000071.1 Streptomyces viridochromogenes strain NRRL 3427 P002contig157.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================ ================== 566 28 79.3 32 .......A...A.TC......-..G.... TGGCCGAGGTCACCCTCGGACCCAAGACCGAA 506 29 82.8 96 ........T.....C.G.......G...T GGTTGTGCGGGGGAGGGGGTGGTGAGCGGTTTGTCGGTTTCGGTGAAAGTGGTGTGGAACGGGTTGGGGGCGTCGTAAAATCGCAGGTCACGCAGT C [480] 380 29 100.0 32 ............................. AGCACGGCATCCGGCCCGTCCTCGGCATCGAC 319 29 100.0 32 ............................. AGGCCGAATTCCTGGCCTCCCTCATGAACGGC 258 29 100.0 32 ............................. GACGCCAGAGCCTCGCGGTATGGGTATCCCTG 197 29 100.0 32 ............................. CCCTTCAACAACGCCGCCGCCGCCAAGGTCCT 136 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================ ================== 7 29 94.6 43 CTGCTCCCCGCGCCTGCGGGGATGATCCC # Left flank : AGTCACTGCACAGTCCGAGGACCCCACCCACTGCTCCTTCTGCGGGAAGCCGGGCTCCGAGGTCGGCAAGCTGGTCTCGGGACCCGGTGTCTACATCTGCGGCGAGTGCGTGGCACTGGCGGAGCGGATCGTTGCCGGGACGATCGGGGAGCCTTCGGCGCAGGGTATCCGCGCCTGGGTCTCCATGACGGACGAAGAGATCTTGAATCATCTCCCTCGTGTCGCCGCGGAAATCGACCGAGCCGAGGCTGAGCTGCGCCTGTGGGTTCAGGAACTGCGGCGACGTGGGGTGACCTGGACGCGGATCGGCGAGACCTTCGGCATCACTCGTCAGTCTGCGTGGGAACGCTTCTCCGGCGAGGAGTGACAGGCGGAGGCCGGCGCAAAGCCACTGCTCTTTGTGTGTACGGGTCGAGTTGAGAGTTTTGACCGGTTTGGGGGTTTCGGTGAAAGTGGTGCGGAACAGATTTGGTGCACCGTAAAGCCGCAGGTCACACAGT # Right flank : CGCACCGGTACGTCTAGGCCGTGTTTTAGAACTCGCTGACCTGCCTGGTTGGCCGTCCGGGGAAGTCGCGGGCGGCCATCCAGATAGTCAGGTCGCGGGCGATGTCGT # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3452-1960 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUP01000071.1 Streptomyces viridochromogenes strain NRRL 3427 P002contig157.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3451 29 100.0 32 ............................. AACGGCACCCCCATGCCGCTGAACGCGACGAA 3390 29 100.0 32 ............................. GTTGACGTCGCCCTGAAGGATCTCGGCCACGT 3329 29 100.0 32 ............................. AATCGGCGACCGCAGGAGCAAGCTAGCTGAAG 3268 29 100.0 32 ............................. GAGGACCGGACGCTCGGCGAGTTCATGTGGCT 3207 29 100.0 32 ............................. GCTACCTGGGACGTCCGCTCCACCCTCGAACT 3146 29 100.0 32 ............................. GATCACTGGTGGTTCCGTTCGCGGGGTGGCCA 3085 29 100.0 32 ............................. GGTTCGAGTCCAACCCCGTGGTCGGCTACGGC 3024 29 100.0 32 ............................. TCACAGGACGCAGCGACATGAAAGCGCCTCTC 2963 29 100.0 32 ............................. CAGCCTCGGCCAGCGCCGTCCGTAACGCAACG 2902 29 100.0 32 ............................. TCGGCGAGAAGGGCAAGCGGGCCCTGGCGTCG 2841 29 100.0 32 ............................. GAGCGGAGCGAGTTGGGCGTGGCCCCCGGTGA 2780 29 100.0 32 ............................. TACCAGATCCTCCAACACAAGATCACGAAGAA 2719 29 100.0 32 ............................. CACAAGGCTCAAGATCTTGATTCGCATGCCCG 2658 29 100.0 32 ............................. CACATCGTGGTGCCGTCCACGTACAGCCGGTA 2597 29 100.0 32 ............................. CGCGAGTCGTACTCGACGCGGTTCAGTTCGAG 2536 29 96.6 32 ..........................T.. GCGAAAGGGCCGCCCGGATGCGACCCGGACGG 2475 29 100.0 32 ............................. GCGACCGGCAGGTACCACTCCAGCTCCACCGC 2414 29 100.0 32 ............................. TACGACACCGAGTTCCGCGAGGACGACGCCGA 2353 29 100.0 32 ............................. TCCCCGGTGCCTGATAGGCGAGGATCGCGGAC 2292 29 100.0 32 ............................. AACGCAGACGCCCCGGGCAAACTGCGGGTCCG 2231 29 100.0 31 ............................. CAGGGTCAAGGCGTTCGACAAACCCGCCCAG 2171 29 100.0 32 ............................. GGCAAGTCGGGCCTGCTGAACGTCCTGGCCGG 2110 29 100.0 32 ............................. GTCACGTCCTCAGGCGTGGCCCACGGGAAGTG 2049 29 89.7 32 .......T...T...C............. TCGGTCCAAGGACAGATCGACAAGGAGGCCGA 1988 29 93.1 0 .......T..T.................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCTCGCCCACACGACCAACAACGAGCAGGGATACACCTTCCGCACCTTCGACCACGCCTGGAACCCCGTCGACCACGAGGGCCTGACCCTCATCCACCGCCCCACAGAAGGCGGCGCCGGTTCTGGGCCGGCGAGCAGCACACAGGGCAAGCCCGGTTGGAGCAACGCCTCCAAGCGACGCAGATTCGGACGCAGGTAAGCACTCACAGAGGGGCACAGACTGCGCCCGCTCCAGCAGGGACGGCCCCGCCCCGAAGTTCAACCTCACCTGGTACATCAATCGCTCTAGCTCCCGCGGGGCTGTCAGGAGGTGTCGAGGCACGCCTGCCGATCGGTAGGGGAGAGGTGCGGACCAGGCGAGTGAAGGTTCTGTTGATGCGTTCTGCGCTCGTGCCTGTGAGGTTGGGGCCAGGTGAGGGTGGGTTATGTCTGGTTTATTCGTTTCGGTGAAAGTGGTTCCGGCGGGGGTGCTCGTGCGGTAAAACAGCAGGTCATCCAGA # Right flank : AACCTGGCCACACAGGTTCACATCCTGTCCCCCCGCTACTTGGCCGGCGCTGCATTCGGAGACTTCTTCACGTCACGGCGCGCCGACACGCTCTGAAAACCCGTAGGGCCCCGACCGGGGGAGTGGCCGGGGCCCTACGGGATGTGGGGTGTGGGGTGGCTTAATGCCGGAAGGTGTCCTTGATGTCTTCCTTGGCCTGGCGTGCGTGGCCCTTGGTCTGGTCGGCGCGGCCTTCGGCGGCCATGCGCTCGTTGCCGACGGCGCGGCCTACGGTCTCCTTGACCTTGCCCTTGGCCTGCTCGGTATGGGCCTTGCTCTTCTCCGTGCCCGACATCGGGACCTCCTCGTGAAGCAACCGGATTGGTCTTGCCCCCCGCCTACTCGCCCCCGCCCGTCCTAAACACTCGCCACCGGCATGACTCACTTCTCCGTCCGGCTCCAAGCACACTGCTGACAGCGGAGCGTGCCCCCGCGGCCGCGGCCCTGACGCCGGCAGCTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //