Array 1 59765-59126 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOND01000012.1 Escherichia coli strain 300290 300290_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59764 29 96.6 32 .....G....................... GGTGAGGCGTCATCTGACGCAAAATCTGGTGC 59703 29 100.0 32 ............................. GACAGACCAGTGGCGGCGGGGTAAATAAATGA 59642 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 59581 29 100.0 32 ............................. GTCTTAAACTCTTTCGGTTGGATTAGCTCTGC 59520 29 100.0 32 ............................. ATCTATTGGCGGAAATAGCGCCCGGTGCTGAG 59459 29 100.0 32 ............................. CCAATCAGGTCGTCGATTTTGCGCGGCTGCGT 59398 29 100.0 32 ............................. TACCGGTGGTAAGCAGCTTGAAATGGGCGACA 59337 29 100.0 32 ............................. AAAACTGTTGCTTTGTGATAAATATTCGCGGG 59276 29 100.0 32 ............................. TCGTTATTTACGGTCATGTCGTCACGTCGGGG 59215 29 100.0 32 ............................. ACTGCGGCGTCAGCCATGTCGGCGAGGACATC 59154 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACCTTGCCCCTGTTGATTTGCTGATCCAGCGAGCAGGGCGATTACAGCGACATATCCGCGATATTAATGGTCAGTTAAAGCGTGACGGTAAAGACGAGCGTCACCCTCCTGTATTGCTGATTCTGGCCCCCGTCTGGAACGACTCTCCGGGTGAAGAATGGTTTGGCAGTGCCATGCGTAACAGTGCATTTGTCTATCCCGATCATGGGCGAATCTGGTTGACGCAGCGTGTGCTGCGTGAACAAGGCGCGATTCAGATGCCACACTCAGCCCGGCTTCTGATTGAATCAGTCTACGGTGAGGACGTGGTAATGCCGGAAGGGTTTGCCCGCAGCGAGCAGGAGCAAGTGGGCAAATACTACTGCGATCGTTCAATGGCTAATAAGTTTGTGCTGAACTTCAGGCCCGGCTATGCCGCCAATATCAACGATTACCTTCCGGAAAAACTGTCGACACGTCTGGCTGAGGAGTCTGTTTCCTTGTGGTTGGCTACCTGTAT # Right flank : TGCAGTACGCCTGATGACAAACCAAGCATCGGGAGTTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACTAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80048-79348 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOND01000012.1 Escherichia coli strain 300290 300290_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80047 29 96.6 32 ...........................T. TGACCAAACTTGTGATGAGGAAAGACCAACGA 79986 29 93.1 32 ...........................TT TGCAGGGAGTAGATCAACAGTTATTAAAATCC 79925 29 96.6 32 ...........................T. ATTTTTTCCGTTAGTTGGTGAGCGTGATGACA 79864 29 100.0 32 ............................. CGTTTCGGCTGATTTGTTCGCCGCGTCGGTGC 79803 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 79742 29 100.0 32 ............................. TCTGACCAACTTCAGCCGCAGAACGGCCCCGC 79681 29 96.6 32 ............................T GAAATCGCGGGAGAGAGTTCGCGCATTATCAG 79620 29 100.0 32 ............................. CCGCGTTTCAATTGATGTAGAGACGGTTCTTG 79559 29 100.0 32 ............................. CTGGGGCAGGCGACAGGAACGCAGTCTGAACC 79498 29 93.1 32 .........G..C................ TAAGATGATCTCACGGAATTGAACGAACTACG 79437 29 93.1 32 .........G..C................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 79376 29 93.1 0 ....................A.......A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.8 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTAAACTAATCATTATCATTCTCTATAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTGGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGGTGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGAATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAAAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATATTTGTTAATTTTTTCTTTAGGGTAATAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //