Array 1 52238-51738 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK074124.1 Legionella pneumophila subsp. pneumophila strain ATCC 43736 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 52237 32 100.0 34 ................................ CACTTAGTTTTTCATACTCGGTATAAAACTTTTC 52171 32 100.0 37 ................................ GCCGTATTCGTTTGGGGGCAGATCGTCCCTGCGATAA 52102 32 100.0 34 ................................ CCGAACGGGATGATGTCACAAAAACATGATATAA 52036 32 100.0 36 ................................ TTTTAATAAATATTCTAACTTGTTTTCCTAACCAAT 51968 32 100.0 35 ................................ TACTCTTATATGTATAGTCTTTTTATTGGCAGTGC 51901 32 100.0 34 ................................ AGATGTTCGTCCGCCGCTAGGCAAGGCTCAATCG 51835 32 100.0 34 ................................ CAAATACACTTCTTTAATTCTTCTGTGCGTCCTG 51769 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GAGCCCAATCCACCTGCATCTGCTGTCCAGGCTCTGTTTCAAACCGAACAATAACCTCTTCTTTTTTTGACCTTAAAGTATGCATATATGCTCTTAATTGGGAGCTGCATCCATCATAACCAAACAATTTAATCTCTCGATAAATCACAGTAGCTGGTACCCAATGAGGTGTTGCATCTTTTAATCTTTTTTGAATATATGCTTTATAGGGGTCAAGCTTTAATGGCTTTTTATCACGTCTTTTGTAATAAGGCTCTGAACCACTTTTAAGATATTTTCGAACAGTATTTATCGACATACCCAATTTTCTAGCAATCGCTTTTTTACTGTATCCCTGCTTGTACAAAATATGAATCATTTTTGACTCCTCTAATTGAATCATTCCCTCCTCCAGAATTCATTCTCCTGAAGAAAACTATAGTAGGGGGATCAATTTTCAGTCGGCAAAGGGGATCAGTTTATATTCAGCAACGACATTTTGCCATAATCATCGTGTCAAA # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 56240-54275 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK074124.1 Legionella pneumophila subsp. pneumophila strain ATCC 43736 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 56239 32 100.0 35 ................................ ATCCAAAAAACACTGAGCAATGTTGCTGATGATTT 56172 32 100.0 35 ................................ TTGTTTTGATAGTGATGAGCCTGGACGAAAAGCAG 56105 32 100.0 33 ................................ TTAATTCCCATAGGGACACAAGAATTGTGTTTG 56040 32 100.0 36 ................................ CGGCAATTGTGATTTCAGGTGAATTATACCATAGAC 55972 32 100.0 35 ................................ TTCTCTACACCAAACACACAACCCTTTATAGCAAT 55905 32 100.0 35 ................................ CATTTTTATTCCTCACTTTGTTCATCGTCATAAAG 55838 32 100.0 35 ................................ TTTGCTTTTGCTGCACAAAACGCAACATTATAAAC 55771 32 100.0 35 ................................ ATATGTTTTCCTCGTCTATATTTTACCTTGCAAAA 55704 32 100.0 35 ................................ GATACTGTTGCGCCATCTCCTGATTGGCTTGCATC 55637 32 100.0 35 ................................ ATTGTTCTCTCAATATATATTATAGTACAAATTTT 55570 32 100.0 36 ................................ AGGTATAAGAATGTGATAATAACTTACAGATCCGAT 55502 32 100.0 35 ................................ ATTAACAGTTAATCTTGCAACATCAGATAAACTAT 55435 32 100.0 35 ................................ GTTGAATATTTACTATGATACAACTGAATTCTTGG 55368 32 100.0 35 ................................ TAATGTATATTCGTCCGGCTTTATCCCGTATTCAG 55301 32 100.0 35 ................................ TTTAGGTAATGCAAAATGGGGATAATCCTCTTCAT 55234 32 100.0 34 ................................ ATTTTAACTTGCAATAATTAATTTGTAACTGAAT 55168 32 100.0 34 ................................ TTGGTTGTTATAAAGAAAAAATTTATCAAACAGA 55102 32 100.0 35 ................................ TATTATATTGTTTAATGTCATTTGTACGTCCTCAT 55035 32 100.0 34 ................................ AACTGAATAGGAACGCCATTGACGTAACCACCAA 54969 32 100.0 34 ................................ ATATCTACCCATAAATCACTCGCTATAAAAATTC 54903 32 100.0 36 ................................ ATGCTCACCTCTTATAAGTTGAGCAATTCTATCATA 54835 32 100.0 35 ................................ AGCCTGTAATTGCATTTGCAGTAATTGATTAGGAT 54768 32 100.0 34 ................................ TATAATAGCGTCTATGAAAAACAACCCCAATTCA 54702 32 100.0 35 ................................ AACGATATCGCTGGGAATTACCCGAATAATACAGT 54635 32 100.0 34 ................................ ATTAATTAAACTAATTGTTAGTACAAAAATTAAA 54569 32 100.0 33 ................................ GCTCATTGTATTACTGCATCTAGTTAACTCTAC 54504 32 100.0 34 ................................ AGTTAATAGTTCAGGGTTTTCATAAATATTACTT 54438 32 100.0 34 ................................ ATTTTTGTAAGGAATAAACACACTTCTGCAAGGT 54372 32 100.0 34 ................................ AATCTTCTTACCTAACAATTCATAAATTCTATTT 54306 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : TGGTTGTACAATTTTGCTGTCAATGCCGATTGAAAATTGATCCTTTTGCCAGATGAAAATTGATCCCCCCTGGTAAAAAAATTAATCAGTTATATTATTTTGCTCCTCCTTCTGATTTTGAATTAAACCGGCCTTAAATTTGTCTTTTAATCTATAACTGTCGCCTCTGCATTGAATGACATGAGCATGATGGAGCAACCTGTCGAGCATAGCTGCTGTTAATACTTTATCGCCGGCGAAAGTATTGTCCCATTGACCAAAAGCGAGATTGGAGGTGGCAATAATAGAACCTTTTTCATAGCGATTTGCAATAACTTGGAAGAAATGATTTGCCTGATCTCGGTTCATTGGTAAATATCCAATTTCATCAATAATGAGCAGTCGAGCATTATTAATAACCTGTCGCATAATATCTTTATATCGCCCTTGGCGATGAGCTGTTTCAAGCAATAACATCAAATCTGCTGCGCTAATAAATTTTGTTTTAATGTTTGCTTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //