Array 1 453-119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDZT010000031.1 Candidatus Frankia meridionalis strain Cppng1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 452 29 100.0 32 ............................. TTGACCGGGTCGAGGACCTGGATCGGCGCGCT 391 29 100.0 32 ............................. AGGTCGCGAAGGTCGGGCTCCTGACGTGCCCG 330 29 96.6 32 ............................C GGACGCCGAGGGTCACGCGGCGCAGCTTGTAG 269 29 93.1 32 ..............C.C............ TTTCATGCGAGTGCCCGCTAGCGCCCGCCGCG 208 29 93.1 32 .........G......C............ TCATGCGTCTGCGCCTGTACGCGGCCGGTGAG 147 29 86.2 0 .........GA...C.C............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTCCGACCCAGGCGTGTGGGGGATGATCG # Left flank : AGACCTGGACGTAGCCGGCCTGATCCGGTCGGCGAAAGGAACCGTCGACAAGCCTGGCCGGCGGGTTCGGCAGAAGTCCGGGCTGAACCGCTCCATACTCGATGTCTCGCCCGGTGAGGTCCGCCGGCAACTCGACTACAAAACCGGCTGGTACGGAAGCACGATCGCCATACTTGATCGTTTCTACCCGTCGAGCAAGACCTGTTCCGGTTGCGGTGGGCGAAAGCCAAACCTGACGCTTTCGGAGCGTGTTTTCATCTGTACTATCTGTGGGCTGTCGATGGATTGTGACGTGAACGCTGCGGTCAACATCGCCCGGTTCGCTGTCGCCTCTGATAGGGGGGAGACATTAAACGCTCGCGGAGCATCCGTAAGACCGAGCCACCTTCAGGTGGGGAGGCCGGATGCGTTGATGCGAGAAGACCCGCCGGAAGGCGGGCCACCCCAGCACAGTGATGCGCTGGCATCCTCCACACCTACATAAGCCCAGGTCGAAAAGT # Right flank : GTGATGGTGGGTAGGGGTTTGCCCCGCCAATTCCACGCGATAGCGTGAGATATGGCATACAGGATTACTATTTACAGTGACGTTGCGGAGTCGAAACACGCAACCCCACCCCCACCCCC # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCCAGGCGTGTGGGGGATGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 66921-66771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDZT010000048.1 Candidatus Frankia meridionalis strain Cppng1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66920 28 100.0 33 ............................ CCGTCCCGGGGAACTGCTCATAGAGCGCGCTCT 66859 28 100.0 33 ............................ ACTGGTAATCGCGTCAAACGTGGCCCGCGCCAA 66798 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : AACTGGCGGGAAGATCCCCGCGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCGGGGACGACGAGCCATGACATGTCCTCTCGTTACTGTTTCGC # Right flank : GCTTGCTGACCTGGGCTTTTATCGACGTGGGCGGGCAAAGAGTATCAGTCCGTCGTAGTCGACAGGGTAGCCGCGGTCGCGGCCTGCGGTGCGTACAGCCCAACCCTGTTCATTGTTCGCTGGTTCGATCATAACGGCCTGGCCATCACCGACGCGTTGGGAGAGCACGGTCCAGAGACGGTCGCGGACACGGGCACTGGGGTTGCCGACGAAGACTCCCGCCGTAATTTCGATCATCCAGCGTGTCAGGTGGCCGCGTAAGCCTTCGGCCGCGGCGACGAGGACGACGACGGTCACGAGGGTGGTGGTTGCTGGTCGATGTCGGGTCCGGTGACACCGAGGACGGTGTCACCGTCCCATTGGTCGGCCAGGTCGGCGGCCCAGTTGACGCCGCCGGGTACGTGGCCGTCGAACTCGTCCCACAGGTGCAGGGCATCGTCGTCGTGGTCGGGGGTTCCTTCCTCAAGCAGGAGATCCTTGATGTCGTGGACGACTCTTGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 67840-67446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDZT010000048.1 Candidatus Frankia meridionalis strain Cppng1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67839 28 100.0 33 ............................ ACTGGGTGAAGCGGAAGGTCGCCTCAGGCGAGC 67778 28 100.0 33 ............................ TGCTTGCCGGGACCTGGCCGGCACACTGGACGA 67717 28 100.0 33 ............................ CATATGGCGGGATCGGAACGTCGGGTGCGGAAA 67656 28 100.0 33 ............................ GAGCAGTTCCCCGGGACGGGACGGCTCGAGCAA 67595 28 96.4 33 ...........T................ CCCCACCGGTTGGCGCGGTATTCGCGCTCTGTA 67534 28 100.0 33 ............................ CTCTAGCTCGTCGGCCAGTGCGATCATGCGGAG 67473 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGGGGACGACGGACTCGTGTTCGGCCGATCGCCTTTCTCGTC # Right flank : ACCCAGCGTGGCCGCTGGCAACGCCAACTGGCGGGAAGATCCCCGCGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCGGGGACGACGAGCCATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 45638-45213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDZT010000007.1 Candidatus Frankia meridionalis strain Cppng1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 45637 30 100.0 34 .............................. CGGAAATCGTCGTCCAACACAAACCGTTCTACAA 45573 30 100.0 37 .............................. GCCGGGTGGACGGGTAGGTCTTCGCGGTGCAGGTAGG 45506 30 100.0 35 .............................. CGCGCATCCCGCTGGATGCACTCTTCTGGCGGACC 45441 30 100.0 37 .............................. TCACCCTCCTCGGGACCCTGTGGTCCGCGAAAGCCCG 45374 30 100.0 36 .............................. CGCGAGGACGTCACTCGTGCGGGTTATCCGGTAGAT 45308 30 100.0 36 .............................. CGCTGCACCTGACCAGCCCCGGCGCCGTCTCGGCAG 45242 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Left flank : GCCATCGCGGGGATCACCCCGTGGACTCTCGCAT # Right flank : CCGAACATCAACGCCCAGGTCGGACGGCGTGTCGAAGTGACGGTGGGGGGTCTGATTGCAGCGAACCTCCGGTCGTACATCACCACGCTGGGGTCCACTGCAGCTTACATGATCAAAGTATGTCGGTCGGGGCGGCCCATCCGGCGCCCAGGCTCTTGCGGACGACGTCGGCGCCAGGCGGGAGCGTGTAGACGAGCACGTGGTCGTACGAATGGTCGATCACGGCGTCGATGCGCCGCTGGAAACGTAGGAGCTGCGCCGGGCTGAGGTTGCCTTCGAACACGCTCCGTTGCACATGATGAAGGTACTGACGGCAGGCCTTGAGGACCTTGCTGTTGCGCTCCGCGGCGGTGTCGTAGACAACGATCACATACATGACTCACCACCAGATCCGGAACGGCTGGTAGCGCTCGCTCTCAAGACACGTGCGGGTGATTTTCAGTGCCTCCAGGTAGAGCAGTTCGTCGTAGGCCACCGGACGTCCGAGCGTCCGGTGCTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 39057-39421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDZT010000070.1 Candidatus Frankia meridionalis strain Cppng1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 39057 30 100.0 37 .............................. GCCCAGGCGGCGCTCGACCAGGCGCCCGACCCAGGTC 39124 30 100.0 35 .............................. CGCTGAACGCCATAGATGTAGGTGCCCAGGTCCTC 39189 30 100.0 39 .............................. ACGTCCACGTGAGTCCCGTAGAAATGCTCGCAACCGCTG 39258 30 100.0 37 .............................. TGCACGATGAATTCGATAAAAGCATCGAATTCATGTT 39325 30 100.0 37 .............................. GCGGACGCCGCGTATTACGTGACGGACTCCCCGGACG 39392 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 100.0 37 GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Left flank : AAAGCGACGCGGTTGCAATCCCTCGTAGGGGCGATGAGGACGGTGGCGTGATGGCCCGCCGGGTGTTTTGGGATCGTTGCAATCCCTCGTAGGGGCGATGAGGACACCGTCGTGGGCACGTTCCTCCGCAGCGTCGTCCTGTCGTTGCAATCCCTCGTAGGGGCGATGAGGACTGGAACACATGTAAACAAGATTGGGGAGGCGGTTGTTGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACCACGTCCGCTGCGCGGCCTGCGCAGTGGGAACGGAAA # Right flank : ATCGTCGTCTTCGTCCAGTCGCTCGTGGAGCTCTTGTTGCAATCCCTCGTAGGGGCGATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //