Array 1 972927-974942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007631.1 Streptococcus agalactiae strain NGBS061 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 972927 36 100.0 30 .................................... AGCACTCACAGCATCTGCAAACAGTACCTT 972993 36 100.0 30 .................................... ACCAACATAACATTTGTTGTAGAATGATCG 973059 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 973125 36 100.0 30 .................................... TTACGAACCGTCCGTTAGCATCTCTTGGTT 973191 36 100.0 30 .................................... ACCAACATAACATTTGTTGTAGAATGATCG 973257 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 973323 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 973389 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 973455 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 973521 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 973587 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 973653 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 973719 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 973785 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 973851 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 973917 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 973983 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 974049 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 974115 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 974181 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 974247 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 974313 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 974379 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 974445 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 974511 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 974577 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 974643 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 974709 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 974775 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 974841 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 974907 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //