Array 1 454722-455726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMJ010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 41 NODE_2_length_636550_cov_72.6021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454722 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 454783 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 454844 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 454905 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 454966 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 455027 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 455088 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 455150 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 455211 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 455272 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 455333 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 455394 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 455455 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 455516 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455577 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455638 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455699 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472291-473784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMJ010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 41 NODE_2_length_636550_cov_72.6021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 472291 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 472352 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 472413 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 472474 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 472535 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 472596 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 472657 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 472718 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 472779 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 472840 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 472901 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 472962 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 473023 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 473084 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 473145 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 473206 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 473267 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 473328 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 473389 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 473450 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 473511 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 473572 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 473633 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 473694 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 473755 29 100.0 0 ............................. | A [473782] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //